mRNA_H-canaliculatus_F_contig10675.645.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10675.645.1
Unique NamemRNA_H-canaliculatus_F_contig10675.645.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10675.645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10675contigH-canaliculatus_F_contig10675:726..1234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size510
Cds size507
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928727.8649936-CDS-H-canaliculatus_F_contig10675:725..12321622928727.8649936-CDS-H-canaliculatus_F_contig10675:725..1232Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10675 726..1232 +
1696845540.6977403-CDS-H-canaliculatus_F_contig10675:725..12321696845540.6977403-CDS-H-canaliculatus_F_contig10675:725..1232Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10675 726..1232 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10675.645.1prot_H-canaliculatus_F_contig10675.645.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10675 726..1232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10675.645.1

>prot_H-canaliculatus_F_contig10675.645.1 ID=prot_H-canaliculatus_F_contig10675.645.1|Name=mRNA_H-canaliculatus_F_contig10675.645.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=169bp
EVGAVGGRGGAEAPAFRAGSASKAPAARAGAAAVGGDGKGSGDEAFGPVS
GGDGGGGGGGGGDGSRPTTAGAATNTPCVASIGTVVPGPAEDPSLARSPS
AGTREEGSASGSAVEGETEPTATVAVSSPEALGAALVPAPAPAPSLAAAA
RGCGADAARDGGVWSIAGG
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mRNA from alignment at H-canaliculatus_F_contig10675:726..1234+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10675.645.1 ID=mRNA_H-canaliculatus_F_contig10675.645.1|Name=mRNA_H-canaliculatus_F_contig10675.645.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=509bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10675:726..1234+ (Hapterophycus canaliculatus Oshoro5f female)
GAAGTTGGAGCGGTGGGAGGGAGAGGGGGGGCTGAGGCCCCTGCGTTCAG
GGCCGGGTCTGCGTCGAAGGCCCCTGCCGCTCGTGCTGGTGCTGCTGCCG
TTGGCGGTGATGGAAAAGGTAGCGGCGATGAAGCTTTTGGGCCGGTGAGT
GGCGGGGACGGTGGTGGTGGTGGTGGTGGTGGTGGTGATGGGTCCAGACC
TACTACCGCGGGGGCGGCGACGAACACGCCATGTGTTGCCTCCATCGGAA
CGGTAGTGCCCGGCCCCGCCGAAGACCCTTCTTTGGCGAGATCGCCGTCT
GCAGGAACGAGAGAGGAGGGGAGTGCGTCCGGTTCGGCCGTGGAGGGGGA
AACGGAGCCAACGGCGACGGTCGCGGTCTCGAGCCCGGAGGCCCTTGGAG
CCGCACTTGTACCCGCGCCCGCGCCCGCGCCCTCGCTAGCAGCCGCCGCA
AGGGGATGCGGCGCCGATGCGGCCAGAGACGGCGGTGTTTGGTCGATCGC
CGGCGGCGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10675:726..1234+

>mRNA_H-canaliculatus_F_contig10675.645.1 ID=mRNA_H-canaliculatus_F_contig10675.645.1|Name=mRNA_H-canaliculatus_F_contig10675.645.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1014bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10675:726..1234+ (Hapterophycus canaliculatus Oshoro5f female)
GAAGTTGGAGCGGTGGGAGGGAGAGGGGGGGCTGAGGCCCCTGCGTTCAG
GGCCGGGTCTGCGTCGAAGGCCCCTGCCGCTCGTGCTGGTGCTGCTGCCG
TTGGCGGTGATGGAAAAGGTAGCGGCGATGAAGCTTTTGGGCCGGTGAGT
GGCGGGGACGGTGGTGGTGGTGGTGGTGGTGGTGGTGATGGGTCCAGACC
TACTACCGCGGGGGCGGCGACGAACACGCCATGTGTTGCCTCCATCGGAA
CGGTAGTGCCCGGCCCCGCCGAAGACCCTTCTTTGGCGAGATCGCCGTCT
GCAGGAACGAGAGAGGAGGGGAGTGCGTCCGGTTCGGCCGTGGAGGGGGA
AACGGAGCCAACGGCGACGGTCGCGGTCTCGAGCCCGGAGGCCCTTGGAG
CCGCACTTGTACCCGCGCCCGCGCCCGCGCCCTCGCTAGCAGCCGCCGCA
AGGGGATGCGGCGCCGATGCGGCCAGAGACGGCGGTGTTTGGTCGATCGC
CGGCGGCGAAGTTGGAGCGGTGGGAGGGAGAGGGGGGGCTGAGGCCCCTG
CGTTCAGGGCCGGGTCTGCGTCGAAGGCCCCTGCCGCTCGTGCTGGTGCT
GCTGCCGTTGGCGGTGATGGAAAAGGTAGCGGCGATGAAGCTTTTGGGCC
GGTGAGTGGCGGGGACGGTGGTGGTGGTGGTGGTGGTGGTGGTGATGGGT
CCAGACCTACTACCGCGGGGGCGGCGACGAACACGCCATGTGTTGCCTCC
ATCGGAACGGTAGTGCCCGGCCCCGCCGAAGACCCTTCTTTGGCGAGATC
GCCGTCTGCAGGAACGAGAGAGGAGGGGAGTGCGTCCGGTTCGGCCGTGG
AGGGGGAAACGGAGCCAACGGCGACGGTCGCGGTCTCGAGCCCGGAGGCC
CTTGGAGCCGCACTTGTACCCGCGCCCGCGCCCGCGCCCTCGCTAGCAGC
CGCCGCAAGGGGATGCGGCGCCGATGCGGCCAGAGACGGCGGTGTTTGGT
CGATCGCCGGCGGC
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