mRNA_H-canaliculatus_F_contig10028.64.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10028.64.1
Unique NamemRNA_H-canaliculatus_F_contig10028.64.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig10028.64.1 vs. uniprot
Match: D8LU88_ECTSI (Ubiquitin domain-containing protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU88_ECTSI)

HSP 1 Score: 218 bits (554), Expect = 5.200e-63
Identity = 105/118 (88.98%), Postives = 112/118 (94.92%), Query Frame = 1
Query:    1 GGAVNRRIVLMRRDCEHTSERTEPFLVLTAEVQDKDSLEGSLQLLVAGEMLSGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMRRHKLNHRCSFPMELDMAPWTLE 354
            GG +  +++   RDCEHTSERTEPF+VLTAEVQDK+SLEGSLQLLVAGEML+GDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMRRHKLNHRCSFPMELDMAPWTLE
Sbjct: 2799 GGTLAYQVI--SRDCEHTSERTEPFIVLTAEVQDKESLEGSLQLLVAGEMLTGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMRRHKLNHRCSFPMELDMAPWTLE 2914          
BLAST of mRNA_H-canaliculatus_F_contig10028.64.1 vs. uniprot
Match: A0A6H5KTV6_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV6_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 1.790e-62
Identity = 104/118 (88.14%), Postives = 111/118 (94.07%), Query Frame = 1
Query:    1 GGAVNRRIVLMRRDCEHTSERTEPFLVLTAEVQDKDSLEGSLQLLVAGEMLSGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMRRHKLNHRCSFPMELDMAPWTLE 354
            GG +  +++   RDCEHTSERTEPF+VLTAEVQDK+SLEGSLQLLVAGEML+GDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDL TMRRHKLNHRCSFPMELDMAPWTLE
Sbjct: 1816 GGTLAYQVI--SRDCEHTSERTEPFIVLTAEVQDKESLEGSLQLLVAGEMLTGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLGTMRRHKLNHRCSFPMELDMAPWTLE 1931          
BLAST of mRNA_H-canaliculatus_F_contig10028.64.1 vs. uniprot
Match: A0A835YQG3_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQG3_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.020e-43
Identity = 73/108 (67.59%), Postives = 83/108 (76.85%), Query Frame = 1
Query:    1 GGAVNRRIVLMRRDCEHTSERTEPFLVLTAEVQDKDSLEGSLQLLVAGEMLSGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMRRHKLNHRCSFPM 324
            GG +  +IV     C HTS R EPFL+LTAEVQ KD+L  +L L  +GE L GDN YLCE+CG+RV AQRRCAIK LP TLIVHLKRFEF+L TM RHKLNHRC+FPM
Sbjct:  105 GGTLQYQIVPREPGCAHTSTRDEPFLMLTAEVQTKDTLAAALDLFTSGETLDGDNKYLCEQCGRRVAAQRRCAIKDLPPTLIVHLKRFEFNLETMTRHKLNHRCAFPM 212          
BLAST of mRNA_H-canaliculatus_F_contig10028.64.1 vs. uniprot
Match: A0A7S4ITW2_9EUKA (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4ITW2_9EUKA)

HSP 1 Score: 134 bits (336), Expect = 6.600e-35
Identity = 64/118 (54.24%), Postives = 84/118 (71.19%), Query Frame = 1
Query:    1 GGAVNRRIVLMRRDCEHTSERTEPFLVLTAEVQDKDSLEGSLQLLVAGEMLSGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMRRHKLNHRCSFPMELDMAPWTLE 354
            GG V  +++   ++CEH SER EPF  L+  V+ K SLE SL+L V G+ML GDN Y C KC ++VTA +RC I+ LP+TLIVH+KRFEFDL  MRR K+N  C FP +L++ P+T E
Sbjct:  181 GGTVCNQVI--SKECEHVSERQEPFYSLSVTVKGKSSLEESLELYVEGDMLEGDNKYQCSKCDKKVTALKRCCIESLPNTLIVHMKRFEFDLEEMRRMKVNDHCKFPFDLNVEPYTKE 296          
BLAST of mRNA_H-canaliculatus_F_contig10028.64.1 vs. uniprot
Match: UPI000644FF27 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644FF27)

HSP 1 Score: 131 bits (329), Expect = 1.040e-32
Identity = 68/137 (49.64%), Postives = 86/137 (62.77%), Query Frame = 1
Query:    1 GGAVNRRIVLMRRDCEHTSERTEPFLVLTAEVQDKDSLEGSLQLLVAGEMLSGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMRRHKLNHRCSFPMELDMAPWTLEVRRRGWTVCLASCPLVPSP 411
            G +VN+ I    ++C H SER EPF  ++ EV++K  ++ SLQL V  E L GDN Y C +C Q+V    R  +K LP+TLI+H KRFEFDL TMRR KLN    FPMELDMAP+T EV  R   +  A    +P P
Sbjct: 1436 GASVNQFI---SQECSHVSEREEPFYTMSVEVKNKKDIQESLQLFVESETLDGDNKYFCSQCSQKVKCLMRRCVKSLPNTLIIHNKRFEFDLDTMRRTKLNDALKFPMELDMAPYTKEVLERKEAIEKAKAQGLPEP 1569          
BLAST of mRNA_H-canaliculatus_F_contig10028.64.1 vs. uniprot
Match: L8GPA8_ACACA (Ubiquitinyl hydrolase 1 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GPA8_ACACA)

HSP 1 Score: 127 bits (319), Expect = 2.310e-31
Identity = 62/118 (52.54%), Postives = 81/118 (68.64%), Query Frame = 1
Query:    1 GGAVNRRIVLMRRDCEHTSERTEPFLVLTAEVQDKDSLEGSLQLLVAGEMLSGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMRRHKLNHRCSFPMELDMAPWTLE 354
            GGA++ +I+   +DC H SER E F  L+ ++++K S+  SL L V G+ML GDN + C +C  +V A +RC +K LP  LIVHLKRFEFDL TM+R KLN  C FPM LDM P+T E
Sbjct: 1511 GGALSNQII--SKDCTHVSEREENFFTLSLDIKNKKSILESLALYVEGDMLEGDNKFHCSECNAKVDALKRCCVKNLPDNLIVHLKRFEFDLETMKRIKLNDSCQFPMILDMEPYTKE 1626          
BLAST of mRNA_H-canaliculatus_F_contig10028.64.1 vs. uniprot
Match: A0A0D2WMI0_CAPO3 (Ubiquitinyl hydrolase 1 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WMI0_CAPO3)

HSP 1 Score: 125 bits (314), Expect = 1.100e-30
Identity = 62/117 (52.99%), Postives = 79/117 (67.52%), Query Frame = 1
Query:    1 GGAVNRRIVLMRRDCEHTSERTEPFLVLTAEVQDKDSLEGSLQLLVAGEMLSGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMRRHKLNHRCSFPMELDMAPWTL 351
            GG + ++I+   +DCEH S R E    L  EV++K S+  SL L V GEML GDN Y C  C + VTA++R  +  LP TLIVHLKRFEFD+ T+RR+K+N  C FP ELDM P+TL
Sbjct: 1938 GGQLIQQII--SQDCEHVSSRVEDCFALQCEVKNKKSILESLALYVEGEMLDGDNKYFCATCSRHVTAKKRACVFSLPQTLIVHLKRFEFDMETLRRYKINDYCEFPHELDMEPYTL 2052          
BLAST of mRNA_H-canaliculatus_F_contig10028.64.1 vs. uniprot
Match: A0A6B2KX30_9EUKA (USP domain-containing protein n=2 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KX30_9EUKA)

HSP 1 Score: 124 bits (311), Expect = 2.610e-30
Identity = 55/118 (46.61%), Postives = 84/118 (71.19%), Query Frame = 1
Query:    1 GGAVNRRIVLMRRDCEHTSERTEPFLVLTAEVQDKDSLEGSLQLLVAGEMLSGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMRRHKLNHRCSFPMELDMAPWTLE 354
            GG +  +++ ++  C+H  ER EPF  ++ +++ K++LE +L+L V GEML+G+N Y+CE CG+ V+  +RC IK LP  L++HLKRFEFD  T+ R K++  CSFPM L+M P+T E
Sbjct:  104 GGNLTNQLIGVQ-GCDHKREREEPFYTISVDIKQKENLESALELFVQGEMLTGENKYMCESCGEPVSTLKRCCIKDLPHMLVIHLKRFEFDYDTLDRKKVSSPCSFPMLLNMEPYTAE 220          
BLAST of mRNA_H-canaliculatus_F_contig10028.64.1 vs. uniprot
Match: A0A4D9CWN0_9STRA (USP domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWN0_9STRA)

HSP 1 Score: 124 bits (310), Expect = 3.630e-30
Identity = 59/115 (51.30%), Postives = 84/115 (73.04%), Query Frame = 1
Query:    1 GGAVNRRIVLMRRDCEHTSERTEPFLVLTAEVQDKDSLEGSLQLLVAGEMLSGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMRRHKLNHRCSFPMELDMAPW 345
            G +VN+   ++ R+C H SE TEPF +L  ++++K+SLE SL L V+GE+L+GDN Y C +CG++V A RR A++ +P  LI+HLKRFEFDL  M + K+N RCSFP+ L M P+
Sbjct:  876 GTSVNQ---IISRECPHRSETTEPFPMLKVDIKNKESLEDSLALYVSGELLAGDNKYYCAECGRKVEAVRRTALQHIPPILIIHLKRFEFDLEHMIKFKVNDRCSFPLHLTMDPY 987          
BLAST of mRNA_H-canaliculatus_F_contig10028.64.1 vs. uniprot
Match: D3BM73_POLPP (Ubiquitin domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BM73_POLPP)

HSP 1 Score: 122 bits (306), Expect = 1.300e-29
Identity = 65/137 (47.45%), Postives = 84/137 (61.31%), Query Frame = 1
Query:    1 GGAVNRRIVLMRRDCEHTSERTEPFLVLTAEVQDKDSLEGSLQLLVAGEMLSGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMRRHKLNHRCSFPMELDMAPWTLEVRRRGWTVCLASCPLVPSP 411
            G +VN+ I    ++C H SER EPF  ++ EV++K  +  SLQL V  E L GDN Y C +C Q+V    R  +K+LP+TLI+H KRFEFDL  MRR KLN +  FPM LDMAP+T E   R   +  A    +P P
Sbjct: 1383 GASVNQFI---SQECPHVSEREEPFYTISLEVKNKRDILDSLQLFVESETLDGDNKYFCSQCSQKVKCLMRRCVKKLPNTLIIHNKRFEFDLDLMRRTKLNDQLKFPMSLDMAPYTKECLERKEAIENAKAKGLPIP 1516          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10028.64.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU88_ECTSI5.200e-6388.98Ubiquitin domain-containing protein (Partial) (Fra... [more]
A0A6H5KTV6_9PHAE1.790e-6288.14USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YQG3_9STRA1.020e-4367.59USP domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S4ITW2_9EUKA6.600e-3554.24Ubiquitin carboxyl-terminal hydrolase (Fragment) n... [more]
UPI000644FF271.040e-3249.64hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
L8GPA8_ACACA2.310e-3152.54Ubiquitinyl hydrolase 1 n=1 Tax=Acanthamoeba caste... [more]
A0A0D2WMI0_CAPO31.100e-3052.99Ubiquitinyl hydrolase 1 n=1 Tax=Capsaspora owczarz... [more]
A0A6B2KX30_9EUKA2.610e-3046.61USP domain-containing protein n=2 Tax=Arcella inte... [more]
A0A4D9CWN0_9STRA3.630e-3051.30USP domain-containing protein n=1 Tax=Nannochlorop... [more]
D3BM73_POLPP1.300e-2947.45Ubiquitin domain-containing protein n=1 Tax=Polysp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10028contigH-canaliculatus_F_contig10028:2139..3257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.1
Seed ortholog evalue9.6e-54
Seed eggNOG ortholog2880.D8LU88
KEGG koko:K11840,ko:K11869
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1866@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size411
Cds size381
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10028.64.1prot_H-canaliculatus_F_contig10028.64.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10028 2139..3227 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928631.425257-CDS-H-canaliculatus_F_contig10028:2138..24501622928631.425257-CDS-H-canaliculatus_F_contig10028:2138..2450Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10028 2139..2450 -
1696845503.3499055-CDS-H-canaliculatus_F_contig10028:2138..24501696845503.3499055-CDS-H-canaliculatus_F_contig10028:2138..2450Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10028 2139..2450 -
1622928631.4370904-CDS-H-canaliculatus_F_contig10028:3158..32271622928631.4370904-CDS-H-canaliculatus_F_contig10028:3158..3227Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10028 3159..3227 -
1696845503.368175-CDS-H-canaliculatus_F_contig10028:3158..32271696845503.368175-CDS-H-canaliculatus_F_contig10028:3158..3227Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10028 3159..3227 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928631.449523-UTR-H-canaliculatus_F_contig10028:3227..32571622928631.449523-UTR-H-canaliculatus_F_contig10028:3227..3257Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10028 3228..3257 -
1696845503.3794198-UTR-H-canaliculatus_F_contig10028:3227..32571696845503.3794198-UTR-H-canaliculatus_F_contig10028:3227..3257Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10028 3228..3257 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10028.64.1

>prot_H-canaliculatus_F_contig10028.64.1 ID=prot_H-canaliculatus_F_contig10028.64.1|Name=mRNA_H-canaliculatus_F_contig10028.64.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=127bp
MRRDCEHTSERTEPFLVLTAEVQDKDSLEGSLQLLVAGEMLSGDNCYLCE
KCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMRRHKLNHRCSFPMEL
DMAPWTLEVRRRGWTVCLASCPLVPSP
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mRNA from alignment at H-canaliculatus_F_contig10028:2139..3257-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10028.64.1 ID=mRNA_H-canaliculatus_F_contig10028.64.1|Name=mRNA_H-canaliculatus_F_contig10028.64.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1119bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10028:2139..3257- (Hapterophycus canaliculatus Oshoro5f female)
GGCGGTGCCGTGAATCGGCGGATTGTGCTCATGCGCAGGGACTGCGAACA CACGTCCGAGAGAACGGAGCCTTTTCTCGTGCTGACCGCAGAGGTTCAGG TGAGACCGGGGACGCGGCGTCAACTCGACCCCATGGCGTGGGAGAGAATC TAGTAATTTCCGCTCATCACTGGCCTACCGTTGTCATGGTGGTCTAAGGA AGGGAGCCAGGGTCGGGGAACAGCGTCGCCGCTTTCCGGCGTGAGTGTGG TGCTTCTTTTCGAAGGTCATCGGCGCGTGCCGCGAGTACCAGAGGGGTGG GAAGGGGAGCGAGAGAAACCTGCCGGTGCCGCATGTTGCGGAGTTCGTGT CCCGTCTTTCGCAATCGCCGTGGCTGTAGTGGTTCCTGCCGCCGACCGTT CCCTCCAGCAGTCAGGGTTGGCCTCGACCACGCCTCGGGGCGACGTATGT ACGTATGCACGTGTGTTGCTCCGCGACAAGCGCGAGAGTGGTCTCCGATG GTACTTCCTTGTAAAACCCGGTCCGGGCCTGGAGGGAGTCCAGACGACGA TGCGGTGTATCGTCCTCCGAGCAACCACAGCCCTCCTTGAACAGCGCTTG CCCAGCAGCCGAGCACCTTTGTGTGCGGCATTTCTACGCTTCCGAACGCA CCACGAGAGAATGGGTCCTTCGATCCAACGCTCGAAGCACTCGTCCAAAC TCCCCCCTCGAATCCCCCCTACCTTTTTTTTTTTTTTACGATTGGATTGT TCTCCTTCACCCGGCTCTCCCCCTGCCTCTCCCGTCTCCTTCGTGCCGCC GTGCCAGGACAAGGATTCCTTGGAAGGTAGCCTGCAGCTGCTCGTGGCCG GCGAGATGCTCTCGGGCGACAACTGCTACCTGTGCGAGAAGTGCGGGCAG CGAGTCACCGCGCAGCGGCGGTGCGCCATCAAGCAGCTGCCGTCCACCCT CATCGTGCACCTCAAGCGCTTCGAGTTCGACCTGAGCACGATGCGCCGCC ACAAGCTCAACCACCGCTGCTCTTTCCCCATGGAGCTGGACATGGCGCCC TGGACGTTGGAGGTGCGACGGCGGGGTTGGACCGTGTGTCTTGCCTCTTG TCCGCTTGTCCCTTCGCCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10028:2139..3257-

>mRNA_H-canaliculatus_F_contig10028.64.1 ID=mRNA_H-canaliculatus_F_contig10028.64.1|Name=mRNA_H-canaliculatus_F_contig10028.64.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=762bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10028:2139..3257- (Hapterophycus canaliculatus Oshoro5f female)
ATGCGCAGGGACTGCGAACACACGTCCGAGAGAACGGAGCCTTTTCTCGT
GCTGACCGCAGAGGTTCAGATGCGCAGGGACTGCGAACACACGTCCGAGA
GAACGGAGCCTTTTCTCGTGCTGACCGCAGAGGTTCAGGACAAGGATTCC
TTGGAAGGTAGCCTGCAGCTGCTCGTGGCCGGCGAGATGCTCTCGGGCGA
CAACTGCTACCTGTGCGAGAAGTGCGGGCAGCGAGTCACCGCGCAGCGGC
GGTGCGCCATCAAGCAGCTGCCGTCCACCCTCATCGTGCACCTCAAGCGC
TTCGAGTTCGACCTGAGCACGATGCGCCGCCACAAGCTCAACCACCGCTG
CTCTTTCCCCATGGAGCTGGACATGGCGCCCTGGACGTTGGAGGTGCGAC
GGCGGGGTTGGACCGTGTGTCTTGCCTCTTGTCCGCTTGTCCCTTCGCCT
GACAAGGATTCCTTGGAAGGTAGCCTGCAGCTGCTCGTGGCCGGCGAGAT
GCTCTCGGGCGACAACTGCTACCTGTGCGAGAAGTGCGGGCAGCGAGTCA
CCGCGCAGCGGCGGTGCGCCATCAAGCAGCTGCCGTCCACCCTCATCGTG
CACCTCAAGCGCTTCGAGTTCGACCTGAGCACGATGCGCCGCCACAAGCT
CAACCACCGCTGCTCTTTCCCCATGGAGCTGGACATGGCGCCCTGGACGT
TGGAGGTGCGACGGCGGGGTTGGACCGTGTGTCTTGCCTCTTGTCCGCTT
GTCCCTTCGCCT
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