mRNA_H-canaliculatus_F_contig10662.636.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10662.636.1
Unique NamemRNA_H-canaliculatus_F_contig10662.636.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10662.636.1 vs. uniprot
Match: D7G8D0_ECTSI (Putative respiratory burst oxidase homolog protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D0_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 4.040e-28
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:    4 GYQYKAGAYVQVNCPAISASEWHPFSMFPVPGSRPRAGFHIEAVGDWTNELFAL 165
            GY+Y+ GAYVQVNCPAIS SEWHPFS+FPVPG  PRAG H+EAVGDWTNELF L
Sbjct:    5 GYKYQPGAYVQVNCPAISVSEWHPFSLFPVPGPNPRAGLHVEAVGDWTNELFRL 58
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BLAST of mRNA_H-canaliculatus_F_contig10662.636.1 vs. uniprot
Match: D7G8C8_ECTSI (Putative respiratory burst oxidase protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C8_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 2.670e-27
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:    4 GYQYKAGAYVQVNCPAISASEWHPFSMFPVPGSRPRAGFHIEAVGDWTNELF 159
            GYQYK GAYVQVNCPAIS SEWHPFS+FPVPGSRPRAGFH+EAVGDWTNE+F
Sbjct:  466 GYQYKPGAYVQVNCPAISVSEWHPFSLFPVPGSRPRAGFHVEAVGDWTNEMF 517
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BLAST of mRNA_H-canaliculatus_F_contig10662.636.1 vs. uniprot
Match: A0A6H5JHI2_9PHAE (FAD-binding FR-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI2_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.270e-26
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:    4 GYQYKAGAYVQVNCPAISASEWHPFSMFPVPGSRPRAGFHIEAVGDWTNELF 159
            GYQYK GAYVQVNCPAIS SEWHPFS+FPVPG RPRAGFH+EAVGDWTNE+F
Sbjct:  478 GYQYKPGAYVQVNCPAISVSEWHPFSLFPVPGPRPRAGFHVEAVGDWTNEMF 529
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BLAST of mRNA_H-canaliculatus_F_contig10662.636.1 vs. uniprot
Match: D7G8C4_ECTSI (Putative respiratory burst oxidase homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C4_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 9.660e-25
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:    4 GYQYKAGAYVQVNCPAISASEWHPFSMFPVPGSRPRAGFHIEAVGDWTNELFAL 165
            GYQ+K G+Y+QVNCPAISA EWHPFSMFPVPG RPR GF++EAVGDWT ELF L
Sbjct:  221 GYQFKVGSYIQVNCPAISAKEWHPFSMFPVPGPRPRGGFYVEAVGDWTQELFRL 274
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BLAST of mRNA_H-canaliculatus_F_contig10662.636.1 vs. uniprot
Match: A0A6H5JEC1_9PHAE (FAD_binding_8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEC1_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 4.100e-24
Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    4 GYQYKAGAYVQVNCPAISASEWHPFSMFPVPGSRPRAGFHIEAVGDWTNELFAL 165
            GYQ+  G+Y+QVNCPAISA EWHPFSMFPVPG RPR GF++EAVGDWT ELF L
Sbjct:  454 GYQFNVGSYIQVNCPAISAKEWHPFSMFPVPGPRPRGGFYVEAVGDWTQELFRL 507
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BLAST of mRNA_H-canaliculatus_F_contig10662.636.1 vs. uniprot
Match: A0A834GWS4_RHOSS (Uncharacterized protein n=2 Tax=Rhododendron TaxID=4346 RepID=A0A834GWS4_RHOSS)

HSP 1 Score: 63.5 bits (153), Expect = 2.230e-10
Identity = 28/52 (53.85%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:    1 RGYQYKAGAYVQVNCPAISASEWHPFSMFPVPGSRPRAGFHIEAVGDWTNEL 156
            +G++YK+G YV + CP IS  EWHPFS+   PG       HI AVGDWT EL
Sbjct:  619 KGFKYKSGQYVFLQCPTISPFEWHPFSITSAPGDN-YLSVHIRAVGDWTQEL 669
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BLAST of mRNA_H-canaliculatus_F_contig10662.636.1 vs. uniprot
Match: A0A6J1D2K5_MOMCH (respiratory burst oxidase homolog protein E-like n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1D2K5_MOMCH)

HSP 1 Score: 63.2 bits (152), Expect = 2.990e-10
Identity = 27/52 (51.92%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:    1 RGYQYKAGAYVQVNCPAISASEWHPFSMFPVPGSRPRAGFHIEAVGDWTNEL 156
            RG++Y++G Y+ + CPAIS  EWHPFS+   PG       HI  VGDWT EL
Sbjct:  116 RGFKYRSGQYIFLQCPAISQFEWHPFSITSAPGDE-YLSVHIRTVGDWTREL 166
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BLAST of mRNA_H-canaliculatus_F_contig10662.636.1 vs. uniprot
Match: A0A7J8WTX8_GOSAI (FAD-binding FR-type domain-containing protein (Fragment) n=1 Tax=Gossypium aridum TaxID=34290 RepID=A0A7J8WTX8_GOSAI)

HSP 1 Score: 60.5 bits (145), Expect = 1.180e-9
Identity = 25/52 (48.08%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:    1 RGYQYKAGAYVQVNCPAISASEWHPFSMFPVPGSRPRAGFHIEAVGDWTNEL 156
            RG++YK+G Y+ VNC  +S  EWHPFS+   PG       HI  +GDWT +L
Sbjct:  164 RGFRYKSGQYIFVNCDVVSPFEWHPFSITSAPGD-DYVSVHIRTLGDWTGQL 214
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BLAST of mRNA_H-canaliculatus_F_contig10662.636.1 vs. uniprot
Match: UPI001C4F7089 (respiratory burst oxidase homolog protein C-like n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4F7089)

HSP 1 Score: 61.2 bits (147), Expect = 1.460e-9
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:    1 RGYQYKAGAYVQVNCPAISASEWHPFSMFPVPGSRPRAGFHIEAVGDWTNEL 156
            +G++YK+G Y+ VNC A+SA EWHPFS+   PG       HI  +GDWT +L
Sbjct:  642 QGFKYKSGQYMFVNCAAVSAFEWHPFSITSAPGD-DYLSVHIRTLGDWTRQL 692
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10662.636.1 vs. uniprot
Match: UPI001CC51889 (respiratory burst oxidase homolog protein C-like n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC51889)

HSP 1 Score: 61.2 bits (147), Expect = 1.460e-9
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:    1 RGYQYKAGAYVQVNCPAISASEWHPFSMFPVPGSRPRAGFHIEAVGDWTNEL 156
            +G++YK+G Y+ VNC A+SA EWHPFS+   PG       HI  +GDWT +L
Sbjct:  651 QGFKYKSGQYMFVNCAAVSAFEWHPFSITSAPGD-DYLSVHIRTLGDWTRQL 701
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10662.636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8D0_ECTSI4.040e-2881.48Putative respiratory burst oxidase homolog protein... [more]
D7G8C8_ECTSI2.670e-2790.38Putative respiratory burst oxidase protein n=1 Tax... [more]
A0A6H5JHI2_9PHAE1.270e-2688.46FAD-binding FR-type domain-containing protein n=1 ... [more]
D7G8C4_ECTSI9.660e-2579.63Putative respiratory burst oxidase homolog n=1 Tax... [more]
A0A6H5JEC1_9PHAE4.100e-2477.78FAD_binding_8 domain-containing protein n=1 Tax=Ec... [more]
A0A834GWS4_RHOSS2.230e-1053.85Uncharacterized protein n=2 Tax=Rhododendron TaxID... [more]
A0A6J1D2K5_MOMCH2.990e-1051.92respiratory burst oxidase homolog protein E-like n... [more]
A0A7J8WTX8_GOSAI1.180e-948.08FAD-binding FR-type domain-containing protein (Fra... [more]
UPI001C4F70891.460e-950.00respiratory burst oxidase homolog protein C-like n... [more]
UPI001CC518891.460e-950.00respiratory burst oxidase homolog protein C-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10662contigH-canaliculatus_F_contig10662:105..492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.8
Seed ortholog evalue1.3e-23
Seed eggNOG ortholog2880.D7G8C8
EggNOG free text desc.oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
EggNOG OGsKOG0039@1,KOG0039@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928723.399225-CDS-H-canaliculatus_F_contig10662:104..1371622928723.399225-CDS-H-canaliculatus_F_contig10662:104..137Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10662 105..137 -
1696845540.099772-CDS-H-canaliculatus_F_contig10662:104..1371696845540.099772-CDS-H-canaliculatus_F_contig10662:104..137Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10662 105..137 -
1622928723.4113917-CDS-H-canaliculatus_F_contig10662:360..4921622928723.4113917-CDS-H-canaliculatus_F_contig10662:360..492Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10662 361..492 -
1696845540.1120248-CDS-H-canaliculatus_F_contig10662:360..4921696845540.1120248-CDS-H-canaliculatus_F_contig10662:360..492Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10662 361..492 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10662.636.1prot_H-canaliculatus_F_contig10662.636.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10662 105..492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10662.636.1

>prot_H-canaliculatus_F_contig10662.636.1 ID=prot_H-canaliculatus_F_contig10662.636.1|Name=mRNA_H-canaliculatus_F_contig10662.636.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=55bp
RGYQYKAGAYVQVNCPAISASEWHPFSMFPVPGSRPRAGFHIEAVGDWTN
ELFAL
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mRNA from alignment at H-canaliculatus_F_contig10662:105..492-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10662.636.1 ID=mRNA_H-canaliculatus_F_contig10662.636.1|Name=mRNA_H-canaliculatus_F_contig10662.636.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=388bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10662:105..492- (Hapterophycus canaliculatus Oshoro5f female)
AGAGGCTATCAATACAAAGCGGGGGCCTACGTCCAGGTCAACTGCCCCGC
GATAAGCGCTTCGGAGTGGCACCCCTTCTCTATGTTTCCTGTACCGGGGT
CCCGCCCGAGGGCAGGCTTTCACATCGAAGCGGTGAGGATTCTCCACGTT
CCGTGGTGAAGTCGACGAAAGTTAATCGCACCTCCATTGCACCCTTCTGT
GGCGCGGTCCGGGTTGGGTGATGATCCTCACATTGAGGCAGCGCCGTAGG
CATCCCGCATACTTGTTTGCGTCAAGAATTCAGCCACAATGCTGAGTTTC
TCGATAGGCGACCATCGTTCCCGCTGGATGCCGTACTTTGCTCCGGTGGA
TACAGGTGGGAGACTGGACAAACGAACTGTTCGCCCTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10662:105..492-

>mRNA_H-canaliculatus_F_contig10662.636.1 ID=mRNA_H-canaliculatus_F_contig10662.636.1|Name=mRNA_H-canaliculatus_F_contig10662.636.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=330bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10662:105..492- (Hapterophycus canaliculatus Oshoro5f female)
AGAGGCTATCAATACAAAGCGGGGGCCTACGTCCAGGTCAACTGCCCCGC
GATAAGCGCTTCGGAGTGGCACCCCTTCTCTATGTTTCCTGTACCGGGGT
CCCGCCCGAGGGCAGGCTTTCACATCGAAGCGAGAGGCTATCAATACAAA
GCGGGGGCCTACGTCCAGGTCAACTGCCCCGCGATAAGCGCTTCGGAGTG
GCACCCCTTCTCTATGTTTCCTGTACCGGGGTCCCGCCCGAGGGCAGGCT
TTCACATCGAAGCGGTGGGAGACTGGACAAACGAACTGTTCGCCCTCGTG
GGAGACTGGACAAACGAACTGTTCGCCCTC
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