mRNA_H-canaliculatus_F_contig1064.623.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1064.623.1
Unique NamemRNA_H-canaliculatus_F_contig1064.623.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1064.623.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 356 bits (914), Expect = 9.980e-119
Identity = 180/220 (81.82%), Postives = 194/220 (88.18%), Query Frame = 1
Query:   70 MVGSQMFLGTAATLIASSAAFVAPMAVRSVAPVSSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVSMLASLGVLVAEQFHPLFMGPNYIGPAVDHFQEITAKYPEFWVFSLLGMALIEYKSISTAFAEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLEKMQTKELNNGRLAMIGIAGMLVQELVNPVSILG 729
            MV +Q+FLG+AATLIASS AFVAPMAVRS AP SSSS    SAGS YV TLPGAPFGDGKIFDPL LSDGA P DIKKWREAEIKHGRV+MLASLGVLVAEQ+HPLFMGP+YIGPAVDHFQEI+A+YPEFWVFSLLGMA IEY +I TAF  P AVTGEGGLKEDY PGDLGFDPL +KP+ EA L+ M+TKELNNGRLAMIGIAGMLVQEL+NP  ILG
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220          
BLAST of mRNA_H-canaliculatus_F_contig1064.623.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 350 bits (898), Expect = 2.720e-116
Identity = 174/220 (79.09%), Postives = 194/220 (88.18%), Query Frame = 1
Query:   70 MVGSQMFLGTAATLIASSAAFVAPMAVRSVAPVSSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVSMLASLGVLVAEQFHPLFMGPNYIGPAVDHFQEITAKYPEFWVFSLLGMALIEYKSISTAFAEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLEKMQTKELNNGRLAMIGIAGMLVQELVNPVSILG 729
            +  S MFLGTAATLIASS AFVAPMAVRS AP SS+S    SAGS YV TLPGAPFGDGKIFDPL LSDGA PG+IK WREAEIKHGRV+MLA++GV+VAEQ+HPLFMGP+YIGPAVDHFQEI+A++PEFW FSLLGMA IEY +I+ A+AEP  VTGEGGL+++YSPGDLGFDPL +KPK +A LEKMQTKELNNGRLAMIGIAGMLVQELVNP  ILG
Sbjct:    2 VASSNMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221          
BLAST of mRNA_H-canaliculatus_F_contig1064.623.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 334 bits (857), Expect = 4.730e-110
Identity = 170/219 (77.63%), Postives = 187/219 (85.39%), Query Frame = 1
Query:   70 MVGSQMFLGTAATLIASSAAFVAPMAVRSVAPVSSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVSMLASLGVLVAEQFHPLFMGPNYIGPAVDHFQEITAKYPEFWVFSLLGMALIEYKSISTAFAEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLEKMQTKELNNGRLAMIGIAGMLVQELVNPVSIL 726
            MV SQMFLGTAA LIASS AFVAP+AVRS AP S++S    SAGS YV TLPGAPF DGKIFDPL LSDGAAPGDIKKWREAEIKHGRV+MLASLG+LVAE++HPLFMG ++IGPA+ HFQEI+A++PEFW FSLLGMA IEY +I TAF  P AVTGEGGLKEDY PGDLGFDPL +KP  EA L+ M+TKELNNGRLAMIGIAGML QELVN   IL
Sbjct:    1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219          
BLAST of mRNA_H-canaliculatus_F_contig1064.623.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 317 bits (812), Expect = 2.380e-103
Identity = 162/217 (74.65%), Postives = 183/217 (84.33%), Query Frame = 1
Query:   79 SQMFLGTAATLIASSAAFVAPMAVRSVAPVSSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVSMLASLGVLVAEQFHPLFMGPNYIGPAVDHFQEITAKYPEFWVFSLLGMALIEYKSISTAFAEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLEKMQTKELNNGRLAMIGIAGMLVQELVNPVSILG 729
            S MFLGTAATLIASSAAFV PMAVRS AP SS+S    SAG+ Y+ TLPGA   +GKIFD L L+DGA PG+IK WREAEIKHGRV+MLA++GV+VAEQ+HP FMGP+YIGPAVDHFQEITAK+P+FW +SLLGMA IEY +I  A+AEP  VTGEGGL+++YSPGDLGFDP  IKPK +A LEKMQ KELNNGRLAMIGI GMLVQELVN   ILG
Sbjct:    5 SNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218          
BLAST of mRNA_H-canaliculatus_F_contig1064.623.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 280 bits (717), Expect = 1.990e-89
Identity = 155/220 (70.45%), Postives = 162/220 (73.64%), Query Frame = 1
Query:   70 MVGSQMFLGTAATLIASSAAFVAPMAVRSVAPVSSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVSMLASLGVLVAEQFHPLFMGPNYIGPAVDHFQEITAKYPEFWVFSLLGMALIEYKSISTAFAEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLEKMQTKELNNGRLAMIGIAGMLVQELVNPVSILG 729
            MV SQMF+GTAATLIASS AFVAPMAVRSV    SS     SAGS YV TLPGAPF DGKIFDPLGLSDGAAPGDIKKWREAEIKHGRV+MLASLGV+VAE                            FW FSLLGMA IEY +I TAF  P AVTGEGGLKEDY PGDLGFDPL +KP  EA L+ M+TKELNNGRLAMIGIAGML QELVNP  ILG
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192          
BLAST of mRNA_H-canaliculatus_F_contig1064.623.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 277 bits (708), Expect = 5.140e-88
Identity = 131/161 (81.37%), Postives = 144/161 (89.44%), Query Frame = 1
Query:  247 KIFDPLGLSDGAAPGDIKKWREAEIKHGRVSMLASLGVLVAEQFHPLFMGPNYIGPAVDHFQEITAKYPEFWVFSLLGMALIEYKSISTAFAEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLEKMQTKELNNGRLAMIGIAGMLVQELVNPVSILG 729
            +IFDPLGLSDGAAPGDIKKWREAEIKHGRV+MLASLGV+VAEQ+HP FMGP+YIGPAVDHFQEI+A++PEFW FSLLGMA +EY +I TAF  P AVTGEGGLKEDY PGDLGFDPL +KP  EA L+ M+TKELNNGRLAMIGIAGML QELVNP  ILG
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196          
BLAST of mRNA_H-canaliculatus_F_contig1064.623.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 278 bits (710), Expect = 1.490e-85
Identity = 132/161 (81.99%), Postives = 144/161 (89.44%), Query Frame = 1
Query:  247 KIFDPLGLSDGAAPGDIKKWREAEIKHGRVSMLASLGVLVAEQFHPLFMGPNYIGPAVDHFQEITAKYPEFWVFSLLGMALIEYKSISTAFAEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLEKMQTKELNNGRLAMIGIAGMLVQELVNPVSILG 729
            +IFDPLGLSDGAAPGDIKKWREAEIKHGRV+MLASLGV+VAEQ+HP FMGP+YIGPAVDHFQEI+A++PEFW FSLLGMA IEY +I TAF  P AVTGEGGLKEDY PGDLGFDPL +KP  EA L+ M+TKELNNGRLAMIGIAGML QELVNP  ILG
Sbjct:  232 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392          
BLAST of mRNA_H-canaliculatus_F_contig1064.623.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 270 bits (689), Expect = 4.530e-84
Identity = 134/213 (62.91%), Postives = 167/213 (78.40%), Query Frame = 1
Query:   91 LGTAATLIASSAAFVAPMAVRSVAPVSSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVSMLASLGVLVAEQFHPLFMGPNYIGPAVDHFQEITAKYPEFWVFSLLGMALIEYKSISTAFAEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLEKMQTKELNNGRLAMIGIAGMLVQELVNPVSILG 729
            +G A+   AS  AF+ P      A  +S++ +M SAGS YV TLPGAPF DGK++DP+GLS  A P DIKKWREAEIKHGRV+MLAS+GVLVAE FHPLF+GP+YIGPA+ HF+EITA++P+FW  +LL +A +EY+ I+  FAE D VTGEGG++ DY PGDLGFDPLG+ P+ E +L  M+TKELN+GRLAMIGI GM+VQELV P+ I G
Sbjct:   60 VGMASWCFASCEAFIVPTPTTLSARPTSTAARM-SAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271          
BLAST of mRNA_H-canaliculatus_F_contig1064.623.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 263 bits (673), Expect = 5.040e-83
Identity = 124/160 (77.50%), Postives = 142/160 (88.75%), Query Frame = 1
Query:  247 KIFDPLGLSDGAAPGDIKKWREAEIKHGRVSMLASLGVLVAEQFHPLFMGPNYIGPAVDHFQEITAKYPEFWVFSLLGMALIEYKSISTAFAEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLEKMQTKELNNGRLAMIGIAGMLVQELVNPVSIL 726
            KIFDPLGL+DGA  GDIK WREAEIKHGRV+MLASLGVLVAE++HP FMGP+YIGPAVDHFQEI+A++PEFW FSLL +ALIEY +I+ A+AEP  VTGEGGL+++YSPGDLGFDPL +KP  +  LE MQTKELNNGRLAMIGIAG LVQELVNP +IL
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174          
BLAST of mRNA_H-canaliculatus_F_contig1064.623.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 8.280e-76
Identity = 134/224 (59.82%), Postives = 164/224 (73.21%), Query Frame = 1
Query:   70 MVGSQMFLGTAATLIASSAAFVAPMAV--RSVAPVSSSSLKMQSAGSAYVETLPGAPFG---DGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVSMLASLGVLVAEQFHPLFMGPNYIGPAVDHFQEITAKYPEFWVFSLLGMALIEYKSISTAFAEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLEKMQTKELNNGRLAMIGIAGMLVQELVNPVSIL 726
            MV SQ+FLGTAATLIASSAAFVAP+A    S+A V++SS    +AGS Y  +LPGAPFG   +GK FDP GL+    P  IKKWREAE+KHGRVSMLA++G+LV+E FHPLFMGP YIGPAV+H Q+I   YP FWV SL  +A IE ++I  A+     VTG G LK +Y PGDLGFDPLG+ PK   D   +Q++EL+ GR AMIG+ GM+VQE+V+   IL
Sbjct:    1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 224          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1064.623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Q6_ECTSI9.980e-11981.82Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S1_ECTSI2.720e-11679.09Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7Q9_ECTSI4.730e-11077.63Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S0_ECTSI2.380e-10374.65Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5K8D0_9PHAE1.990e-8970.45LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
D7G7S5_ECTSI5.140e-8881.37Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JWB4_9PHAE1.490e-8581.99LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G5B4_ECTSI4.530e-8462.91Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7Q7_ECTSI5.040e-8377.50Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7FQG7_ECTSI8.280e-7659.82Light harvesting complex protein n=2 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1064contigH-canaliculatus_F_contig1064:3793..6685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score355.5
Seed ortholog evalue1.8e-95
Seed eggNOG ortholog2880.D7G7Q6
KEGG koko:K08914
KEGG Pathwayko00196,ko01100,map00196,map01100
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2BEWM@1,2S15M@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categorychloroplast
Exons4
Model size1485
Cds size663
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1064.623.1prot_H-canaliculatus_F_contig1064.623.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1064 4546..6616 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928721.1900446-UTR-H-canaliculatus_F_contig1064:3792..45451622928721.1900446-UTR-H-canaliculatus_F_contig1064:3792..4545Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1064 3793..4545 -
1696845538.8824806-UTR-H-canaliculatus_F_contig1064:3792..45451696845538.8824806-UTR-H-canaliculatus_F_contig1064:3792..4545Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1064 3793..4545 -
1622928721.2842648-UTR-H-canaliculatus_F_contig1064:6616..66851622928721.2842648-UTR-H-canaliculatus_F_contig1064:6616..6685Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1064 6617..6685 -
1696845538.9436069-UTR-H-canaliculatus_F_contig1064:6616..66851696845538.9436069-UTR-H-canaliculatus_F_contig1064:6616..6685Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1064 6617..6685 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928721.202799-CDS-H-canaliculatus_F_contig1064:4545..48211622928721.202799-CDS-H-canaliculatus_F_contig1064:4545..4821Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1064 4546..4821 -
1696845538.898414-CDS-H-canaliculatus_F_contig1064:4545..48211696845538.898414-CDS-H-canaliculatus_F_contig1064:4545..4821Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1064 4546..4821 -
1622928721.2194405-CDS-H-canaliculatus_F_contig1064:5239..53231622928721.2194405-CDS-H-canaliculatus_F_contig1064:5239..5323Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1064 5240..5323 -
1696845538.907549-CDS-H-canaliculatus_F_contig1064:5239..53231696845538.907549-CDS-H-canaliculatus_F_contig1064:5239..5323Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1064 5240..5323 -
1622928721.2340596-CDS-H-canaliculatus_F_contig1064:5936..60591622928721.2340596-CDS-H-canaliculatus_F_contig1064:5936..6059Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1064 5937..6059 -
1696845538.9207537-CDS-H-canaliculatus_F_contig1064:5936..60591696845538.9207537-CDS-H-canaliculatus_F_contig1064:5936..6059Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1064 5937..6059 -
1622928721.2502954-CDS-H-canaliculatus_F_contig1064:6436..66161622928721.2502954-CDS-H-canaliculatus_F_contig1064:6436..6616Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1064 6437..6616 -
1696845538.9329193-CDS-H-canaliculatus_F_contig1064:6436..66161696845538.9329193-CDS-H-canaliculatus_F_contig1064:6436..6616Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1064 6437..6616 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1064.623.1

>prot_H-canaliculatus_F_contig1064.623.1 ID=prot_H-canaliculatus_F_contig1064.623.1|Name=mRNA_H-canaliculatus_F_contig1064.623.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=221bp
MVGSQMFLGTAATLIASSAAFVAPMAVRSVAPVSSSSLKMQSAGSAYVET
LPGAPFGDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVSMLASLGVLVA
EQFHPLFMGPNYIGPAVDHFQEITAKYPEFWVFSLLGMALIEYKSISTAF
AEPDAVTGEGGLKEDYSPGDLGFDPLGIKPKTEADLEKMQTKELNNGRLA
MIGIAGMLVQELVNPVSILG*
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mRNA from alignment at H-canaliculatus_F_contig1064:3793..6685-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1064.623.1 ID=mRNA_H-canaliculatus_F_contig1064.623.1|Name=mRNA_H-canaliculatus_F_contig1064.623.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2893bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1064:3793..6685- (Hapterophycus canaliculatus Oshoro5f female)
CCTCCACTCTCACACATTCCACCGTCTGCCGCACATCCAACTCCTCTCAC CCTCACACTCGCCAGCAAGATGGTTGGATCCCAGATGTTCCTCGGCACCG CCGCCACCCTCATCGCCTCCTCGGCTGCCTTCGTCGCGCCGATGGCAGTG AGATCCGTCGCGCCTGTGTCGTCTTCGAGCCTCAAGATGCAGAGCGCCGG TTCCGCGTACGTGGAGACCCTGCCGGGAGCTCCATTCGGCGACGGCAAGG TAAGGGGTCTCGGCAACATGCGTGTCTGTTATCTATCGCCGGAGAATGAT TTCGCCTTCGTCGGGAAAGAGCCCTGTGGCCGTCGGCGTGTCATTTGCCC ATTTGCCCTCCTGTGTCAAATCCAGGAGACACTTCTTGACTGTCGAAGTT CGAAGCGTTCACGAAGATCATCCCGTGTACGACCCTGATGCAAAACTCAT CTAGGCAGGTCCGCCGTCTGTGTCCTACGTGCTACATCTCTTTCAACTGA CCCGGCCGCGCTCTTTTCTGGACCAGTCGACGCGTCCTTTCGCGCTCTAT TCTACGGATCCTTTTCGTGTGAATCATCCTCGCAACATGCTGCCGATCGT GCCACCCGAATCGACGCCCACCGCAGATCTTCGACCCTCTCGGACTCTCC GACGGCGCTGCACCGGGCGACATCAAGAAATGGCGTGAGGCAGAGATCAA GCACGGACGCGTGTCGATGCTTGCATCTCTTGGCGTCCTCGTCGCCGAAG TAAGCAATTAAAAACACTTACCCTAATATTCTGTCGTACGTATTTGCATT AGCTGCGTCACTGACTTGCGAGTGATGAACTCTTTTTTTTGTCACATGTT TTTCTAGAACACTCATCGGTGTACACCTCGCGTACCTCTACAGTAGGGGG AAAATCGTGAGTACGAATCCGATCGAGTGTGAAATTTTACGAATTTGTAC AAGTCGTGGAAAGCTATCGATGCTAAAAAGCTCGTCAGCGAACAAACTGC GACTTCTCCGTTGACAGGGGAAAGGGATGGCTGAACCCTTCTCGCGACAT AAATGAAGGCACGCACCGCAGGAGGTGGTGTACCATCTCTTCTCGTCTGA ACCCGGCAAATTCGTCGTGTCAATGGTACTGAGACTATACTCGTACAACA TATCTAGCATCTGCAGTACGCGGAAATATGAGGGTCCACCTGAAGAGGAG ACAGATAAGGCCAAAACACTTATAGATGGGAGGACAAGAAAAATCTATGC CGTACACCAAGCATCACGTATACCAAACATCAATGGTACGTACTTTTCGT CGAACCGTGACTTATAGTTGCGTCCTGCCACACAACCCCTGTTCCGTCGG TTGTACCTGCAGCAATTCCACCCTCTGTTCATGGGCCCGAACTACATCGG CCCTGCTGTGGACCACTTCCAGGAGATCACCGCGAAGTACCCTGAGGTGA GGCAATAAGTCAACATAGGCTTTCAGCAAAGTAACCGCCACCAGGGCAGT ATCTCGTGCGGAGGAAGAAGGATCGAAGAAAATAAAGAAAAGAAGCAGGT ACAAAAAAAACGCAGTATCTTTGAAGGCTGTCAGACAGCAGCGGAGCACG CGGTGGGCTGACTTACGAAGGGGTCGTATTCGATGCCCTACACCAGCCTT GCCCGACCAGCGCCGCAGGTGTCGCCGAGATTTCCTGCCGAGAAGCCTGC TGCATCGGAGAGTCGAACACAGTATCTCGATCTCGGTCATCCATCAACCT CTAATGGATGAGACCTCACGATATACTGCCCCCGAACGGCCACGATCGAA CATCAACGCATGACCCCCCCCCGTGGTCCTCCCGAACCTCGCCAACCACC GTTGTTAATATCAGTTCTGGGTGTTCTCTCTACTCGGCATGGCGCTCATC GAGTACAAATCGATCAGCACTGCCTTCGCCGAGCCTGACGCGGTCACTGG CGAGGGCGGCCTCAAGGAGGACTACAGCCCGGGAGACCTCGGCTTCGACC CCCTCGGCATCAAGCCCAAGACCGAGGCAGACCTAGAGAAGATGCAGACC AAGGAGCTCAACAACGGCCGCCTGGCCATGATTGGGATCGCCGGCATGTT GGTGCAGGAGCTGGTCAACCCTGTCAGCATCCTCGGCTAAATTCGTGGAG TCTTTCGTTCGTGATGCAGTGATAGTTACACTTGGCTACTAGCGTGTGTA CAGCTTCGACATGCTAAACCAAAGAAGTGGGGGATTTGCTGCTGCGTACG TTCCGGTTTACGATCCGAAAAGATGGGTACCGAGAAAGTTCTCGCACAAG TGTACAGTAAAATACTAGAAAATGGTTTGCTAGTCTTTCGTGTTCAATTT TTGCAGTACTAACGACCGAATACTGATGCCGGTCGACTTCTTGTTGTACC CGGTTGCGAGTTATCGGAGTTGATACCGGGGTGTTTTGACACCCGTATGT TTGCTTGTTTTTTTCCAGGAAATGGCTGAAGTGTCCCTCCATCTCAATTA AGTGCAGTAAAGTTCGAGGCTCTTCTCTGATAGCGGCGTGTCTGAAGTAT GGATGGGTCGTAGTTAGTCGTTCGCCCCCTAACCCATGGGAAGGTGTTAT GCTGCACGCTTGCCTGGCCTCCAATGGCCCAGGCACCATCCCCAACCAGC TTCGGTCTCCGTAAATATGGCAGAGTCCGCAGATCTCGATATGCTTCAGA GAGGGAAATGGATTGAGTCAACGTCGCCTGTTATTTGAACGTATTTGACA CGAAAGAGATCGAACATTTTTGCCGTCGTTGTGTTTTCGAAGTGGCAACT CACCGGTGGTCTGTGACGTTGACTGATGGTGGCTTGGGAAACTGGCGATC TTTCGAGCTCGAAAGTGAGGCCTTATTAAATCTGTTCGACACT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1064:3793..6685-

>mRNA_H-canaliculatus_F_contig1064.623.1 ID=mRNA_H-canaliculatus_F_contig1064.623.1|Name=mRNA_H-canaliculatus_F_contig1064.623.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1326bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1064:3793..6685- (Hapterophycus canaliculatus Oshoro5f female)
ATGGTTGGATCCCAGATGTTCCTCGGCACCGCCGCCACCCTCATCGCCTC
CTCGGCTGCCTTCGTCGCGCCGATGGCAGTGAGATCCGTCGCGCCTGTGT
CGTCTTCGAGCCTCAAGATGCAGAGCGCCGGTTCCGCGTACGTGGAGACC
CTGCCGGGAGCTCCATTCGGCGACGGCAAGATGGTTGGATCCCAGATGTT
CCTCGGCACCGCCGCCACCCTCATCGCCTCCTCGGCTGCCTTCGTCGCGC
CGATGGCAGTGAGATCCGTCGCGCCTGTGTCGTCTTCGAGCCTCAAGATG
CAGAGCGCCGGTTCCGCGTACGTGGAGACCCTGCCGGGAGCTCCATTCGG
CGACGGCAAGATCTTCGACCCTCTCGGACTCTCCGACGGCGCTGCACCGG
GCGACATCAAGAAATGGCGTGAGGCAGAGATCAAGCACGGACGCGTGTCG
ATGCTTGCATCTCTTGGCGTCCTCGTCGCCGAAATCTTCGACCCTCTCGG
ACTCTCCGACGGCGCTGCACCGGGCGACATCAAGAAATGGCGTGAGGCAG
AGATCAAGCACGGACGCGTGTCGATGCTTGCATCTCTTGGCGTCCTCGTC
GCCGAACAATTCCACCCTCTGTTCATGGGCCCGAACTACATCGGCCCTGC
TGTGGACCACTTCCAGGAGATCACCGCGAAGTACCCTGAGCAATTCCACC
CTCTGTTCATGGGCCCGAACTACATCGGCCCTGCTGTGGACCACTTCCAG
GAGATCACCGCGAAGTACCCTGAGTTCTGGGTGTTCTCTCTACTCGGCAT
GGCGCTCATCGAGTACAAATCGATCAGCACTGCCTTCGCCGAGCCTGACG
CGGTCACTGGCGAGGGCGGCCTCAAGGAGGACTACAGCCCGGGAGACCTC
GGCTTCGACCCCCTCGGCATCAAGCCCAAGACCGAGGCAGACCTAGAGAA
GATGCAGACCAAGGAGCTCAACAACGGCCGCCTGGCCATGATTGGGATCG
CCGGCATGTTGGTGCAGGAGCTGGTCAACCCTGTCAGCATCCTCGGCTAA
TTCTGGGTGTTCTCTCTACTCGGCATGGCGCTCATCGAGTACAAATCGAT
CAGCACTGCCTTCGCCGAGCCTGACGCGGTCACTGGCGAGGGCGGCCTCA
AGGAGGACTACAGCCCGGGAGACCTCGGCTTCGACCCCCTCGGCATCAAG
CCCAAGACCGAGGCAGACCTAGAGAAGATGCAGACCAAGGAGCTCAACAA
CGGCCGCCTGGCCATGATTGGGATCGCCGGCATGTTGGTGCAGGAGCTGG
TCAACCCTGTCAGCATCCTCGGCTAA
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