mRNA_H-canaliculatus_F_contig10027.63.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10027.63.1
Unique NamemRNA_H-canaliculatus_F_contig10027.63.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10027.63.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10027contigH-canaliculatus_F_contig10027:3761..4387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size451
Cds size327
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10027.63.1prot_H-canaliculatus_F_contig10027.63.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10027 3883..4387 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928631.322505-UTR-H-canaliculatus_F_contig10027:3760..38821622928631.322505-UTR-H-canaliculatus_F_contig10027:3760..3882Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10027 3761..3882 -
1696845503.2504754-UTR-H-canaliculatus_F_contig10027:3760..38821696845503.2504754-UTR-H-canaliculatus_F_contig10027:3760..3882Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10027 3761..3882 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928631.3454354-CDS-H-canaliculatus_F_contig10027:3882..41531622928631.3454354-CDS-H-canaliculatus_F_contig10027:3882..4153Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10027 3883..4153 -
1696845503.2590764-CDS-H-canaliculatus_F_contig10027:3882..41531696845503.2590764-CDS-H-canaliculatus_F_contig10027:3882..4153Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10027 3883..4153 -
1622928631.3558185-CDS-H-canaliculatus_F_contig10027:4331..43871622928631.3558185-CDS-H-canaliculatus_F_contig10027:4331..4387Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10027 4332..4387 -
1696845503.2675476-CDS-H-canaliculatus_F_contig10027:4331..43871696845503.2675476-CDS-H-canaliculatus_F_contig10027:4331..4387Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10027 4332..4387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10027.63.1

>prot_H-canaliculatus_F_contig10027.63.1 ID=prot_H-canaliculatus_F_contig10027.63.1|Name=mRNA_H-canaliculatus_F_contig10027.63.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=109bp
KPRCRSRACSRAPRGCGRRRVSERACSTSGWDNLNGGWLDKHQVLPYHGT
LDGGREKRVRVLGKRGMQKARCRSHGLSHCQLTVYTRAGTAVMSATAATP
SRLNLVQK*
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mRNA from alignment at H-canaliculatus_F_contig10027:3761..4387-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10027.63.1 ID=mRNA_H-canaliculatus_F_contig10027.63.1|Name=mRNA_H-canaliculatus_F_contig10027.63.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=627bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10027:3761..4387- (Hapterophycus canaliculatus Oshoro5f female)
AAGCCACGGTGCCGATCGAGGGCATGCAGCCGGGCACCTCGGGGCTGCGG
AAGAAGGTGGGTTTGGTGTTTGTTTTTGAGGTACACGGCATTGCTGTGTT
TCGTGTATCGGTCGGTGCCATCTTTGTTTTGGATGAGCCTTTCCGTCCAA
CGCGATTCACGCCTCTCTTAGTCGGAGTTGTTCTTATGTACGTTTTCCGT
TCCGACCCTCTTCCGCTCAAAATACGAATCGGAGACGGGTATCGGAGCGC
GCTTGCTCCACCTCTGGGTGGGACAATTTGAATGGTGGATGGCTTGACAA
GCATCAGGTGCTGCCGTACCATGGCACACTTGACGGGGGGAGAGAAAAGC
GGGTACGCGTCCTTGGGAAGAGAGGCATGCAGAAGGCAAGATGCAGGAGC
CATGGGCTCAGCCATTGCCAGTTAACAGTTTACACGAGGGCCGGGACCGC
GGTCATGTCAGCCACCGCCGCAACCCCTTCAAGGTTAAACTTGGTACAAA
AATGAGCGGAGTCAAACGCACACGAATTCGCGGGGGAATCATGACGAAAA
CGTTGCCAGCTTGAGTGCTCGGCATCCATCTTGTGTACACCACACACGGC
ACGCACGGCGCAGTTGCCGTTTCACAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10027:3761..4387-

>mRNA_H-canaliculatus_F_contig10027.63.1 ID=mRNA_H-canaliculatus_F_contig10027.63.1|Name=mRNA_H-canaliculatus_F_contig10027.63.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=654bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10027:3761..4387- (Hapterophycus canaliculatus Oshoro5f female)
AAGCCACGGTGCCGATCGAGGGCATGCAGCCGGGCACCTCGGGGCTGCGG
AAGAAGAAGCCACGGTGCCGATCGAGGGCATGCAGCCGGGCACCTCGGGG
CTGCGGAAGAAGACGGGTATCGGAGCGCGCTTGCTCCACCTCTGGGTGGG
ACAATTTGAATGGTGGATGGCTTGACAAGCATCAGGTGCTGCCGTACCAT
GGCACACTTGACGGGGGGAGAGAAAAGCGGGTACGCGTCCTTGGGAAGAG
AGGCATGCAGAAGGCAAGATGCAGGAGCCATGGGCTCAGCCATTGCCAGT
TAACAGTTTACACGAGGGCCGGGACCGCGGTCATGTCAGCCACCGCCGCA
ACCCCTTCAAGGTTAAACTTGGTACAAAAATGAACGGGTATCGGAGCGCG
CTTGCTCCACCTCTGGGTGGGACAATTTGAATGGTGGATGGCTTGACAAG
CATCAGGTGCTGCCGTACCATGGCACACTTGACGGGGGGAGAGAAAAGCG
GGTACGCGTCCTTGGGAAGAGAGGCATGCAGAAGGCAAGATGCAGGAGCC
ATGGGCTCAGCCATTGCCAGTTAACAGTTTACACGAGGGCCGGGACCGCG
GTCATGTCAGCCACCGCCGCAACCCCTTCAAGGTTAAACTTGGTACAAAA
ATGA
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