mRNA_H-canaliculatus_F_contig1063.613.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1063.613.1
Unique NamemRNA_H-canaliculatus_F_contig1063.613.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1063.613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1063contigH-canaliculatus_F_contig1063:779..1126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size349
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928719.8632777-CDS-H-canaliculatus_F_contig1063:778..11201622928719.8632777-CDS-H-canaliculatus_F_contig1063:778..1120Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1063 779..1120 +
1696845538.2039783-CDS-H-canaliculatus_F_contig1063:778..11201696845538.2039783-CDS-H-canaliculatus_F_contig1063:778..1120Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1063 779..1120 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928719.8799908-UTR-H-canaliculatus_F_contig1063:1120..11261622928719.8799908-UTR-H-canaliculatus_F_contig1063:1120..1126Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1063 1121..1126 +
1696845538.2120006-UTR-H-canaliculatus_F_contig1063:1120..11261696845538.2120006-UTR-H-canaliculatus_F_contig1063:1120..1126Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1063 1121..1126 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1063.613.1prot_H-canaliculatus_F_contig1063.613.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1063 779..1120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1063.613.1

>prot_H-canaliculatus_F_contig1063.613.1 ID=prot_H-canaliculatus_F_contig1063.613.1|Name=mRNA_H-canaliculatus_F_contig1063.613.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=114bp
KGNTKERYQDPKEGQYRDPEEGRWSKRCSSVICRETSTIASPPPSAFKSQ
IDRQGNKRTACVWTSETAASAWGAGRQNKYPTARLFLSYSPGRGLFSCQR
TPDRAGTDLSLLV*
back to top

mRNA from alignment at H-canaliculatus_F_contig1063:779..1126+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1063.613.1 ID=mRNA_H-canaliculatus_F_contig1063.613.1|Name=mRNA_H-canaliculatus_F_contig1063.613.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=348bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1063:779..1126+ (Hapterophycus canaliculatus Oshoro5f female)
AAAGGGAACACAAAGGAGCGGTACCAAGATCCAAAAGAGGGGCAGTACCG
AGATCCAGAAGAGGGGCGATGGTCTAAGCGATGTAGCAGTGTGATATGCC
GGGAGACATCCACCATTGCATCCCCGCCACCATCGGCTTTCAAGTCTCAA
ATCGATCGACAGGGTAACAAGAGAACAGCGTGTGTGTGGACCTCGGAGAC
AGCAGCTTCCGCGTGGGGAGCAGGGAGACAAAACAAATACCCTACGGCAA
GACTCTTTCTCTCCTATTCACCTGGGAGGGGGCTCTTTTCGTGCCAACGC
ACACCGGATAGGGCGGGGACCGATCTCAGCTTGCTGGTGTGATGTGGG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1063:779..1126+

>mRNA_H-canaliculatus_F_contig1063.613.1 ID=mRNA_H-canaliculatus_F_contig1063.613.1|Name=mRNA_H-canaliculatus_F_contig1063.613.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=684bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1063:779..1126+ (Hapterophycus canaliculatus Oshoro5f female)
AAAGGGAACACAAAGGAGCGGTACCAAGATCCAAAAGAGGGGCAGTACCG
AGATCCAGAAGAGGGGCGATGGTCTAAGCGATGTAGCAGTGTGATATGCC
GGGAGACATCCACCATTGCATCCCCGCCACCATCGGCTTTCAAGTCTCAA
ATCGATCGACAGGGTAACAAGAGAACAGCGTGTGTGTGGACCTCGGAGAC
AGCAGCTTCCGCGTGGGGAGCAGGGAGACAAAACAAATACCCTACGGCAA
GACTCTTTCTCTCCTATTCACCTGGGAGGGGGCTCTTTTCGTGCCAACGC
ACACCGGATAGGGCGGGGACCGATCTCAGCTTGCTGGTGTGAAAAGGGAA
CACAAAGGAGCGGTACCAAGATCCAAAAGAGGGGCAGTACCGAGATCCAG
AAGAGGGGCGATGGTCTAAGCGATGTAGCAGTGTGATATGCCGGGAGACA
TCCACCATTGCATCCCCGCCACCATCGGCTTTCAAGTCTCAAATCGATCG
ACAGGGTAACAAGAGAACAGCGTGTGTGTGGACCTCGGAGACAGCAGCTT
CCGCGTGGGGAGCAGGGAGACAAAACAAATACCCTACGGCAAGACTCTTT
CTCTCCTATTCACCTGGGAGGGGGCTCTTTTCGTGCCAACGCACACCGGA
TAGGGCGGGGACCGATCTCAGCTTGCTGGTGTGA
back to top