mRNA_H-canaliculatus_F_contig10621.605.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10621.605.1
Unique NamemRNA_H-canaliculatus_F_contig10621.605.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10621.605.1 vs. uniprot
Match: D7G8Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y9_ECTSI)

HSP 1 Score: 214 bits (546), Expect = 3.680e-62
Identity = 101/115 (87.83%), Postives = 106/115 (92.17%), Query Frame = 1 
Query:   28 RAAAELGSSVTLTDSVGQRVEVLLENRLGEGGQRNVTVYCPVWMVNTSHYRLRYRQDGQKQMPAGTVSKAGDGQRPIYDNDCMGQRDSRQSSCFGTPVRGESNSGSTLPPWVIPN 372
            R AAELGSSV LTDSVGQRVEV LENRLG+GGQRNVTVYCPVWMVNTSHYRLRYRQDGQ+QMPAGTVSKAGDGQRPIY+NDC G RDS+QSSCF TP RGE  SGS+LPPWVIPN
Sbjct: 4900 RPAAELGSSVALTDSVGQRVEVYLENRLGDGGQRNVTVYCPVWMVNTSHYRLRYRQDGQRQMPAGTVSKAGDGQRPIYENDCPGPRDSQQSSCFNTPARGEGGSGSSLPPWVIPN 5014
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BLAST of mRNA_H-canaliculatus_F_contig10621.605.1 vs. uniprot
Match: A0A835ZCW3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCW3_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 8.950e-19
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   40 ELGSSVTLTDSVGQRVEVLLENRLGEGGQRNVTVYCPVWMVNTSHYRLRYRQDG 201
            E  S +TLTD+VGQR+ + +ENR G GGQR+VTVY P WMVNTSHYR+R+RQDG
Sbjct:   90 ECASGITLTDAVGQRIALRVENRRGGGGQRHVTVYAPYWMVNTSHYRMRFRQDG 143
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BLAST of mRNA_H-canaliculatus_F_contig10621.605.1 vs. uniprot
Match: A0A482SP39_9ARCH (SHR-BD domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SP39_9ARCH)

HSP 1 Score: 75.1 bits (183), Expect = 4.940e-15
Identity = 31/60 (51.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:   52 SVTLTDSVGQRVEVLLENRLGEGGQRNVTVYCPVWMVNTSHYRLRYRQDGQKQMPAGTVS 231
            S+ LTD+VGQ++ + +EN  G GGQR+V VYCP W+VNTS Y  R R++G+ +  AG+V+
Sbjct:   53 SIVLTDTVGQKLRLNVENTQGGGGQRHVVVYCPYWVVNTSQYAFRVREEGEMEQTAGSVT 112
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BLAST of mRNA_H-canaliculatus_F_contig10621.605.1 vs. uniprot
Match: K0SGL5_THAOC (PDZ domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SGL5_THAOC)

HSP 1 Score: 77.0 bits (188), Expect = 6.400e-14
Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:   40 ELGSSVTLTDSVGQRVEVLLENRLGEGGQRNVTVYCPVWMVNTSHYRLRYRQDGQKQMPAGTV-------SKAGDGQRPIY 261
            ++ S +T+ DS GQ++ +LL+N  G GGQR V+VYCP W+VNT+ + L+Y+Q+     P+GTV       SK  DG   IY
Sbjct: 2258 DVASELTVVDSQGQKLTLLLDNESGRGGQRRVSVYCPFWIVNTTEHSLKYKQEKATSFPSGTVIENHRDGSKPVDGSNRIY 2338
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BLAST of mRNA_H-canaliculatus_F_contig10621.605.1 vs. uniprot
Match: B8CBY6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBY6_THAPS)

HSP 1 Score: 75.9 bits (185), Expect = 1.650e-13
Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:   34 AAELGSSVTLTDSVGQRVEVLLENRLGEGGQRNVTVYCPVWMVNTSHYRLRYRQDGQKQMPAGTVSKAG-DGQRPI 258
            A ++ S   + DS+GQR+ +L++N +G GGQR V++YCP W+VNT+ + L+YRQ+  +   +GTVS    DG +P+
Sbjct: 3307 AEDVASETNVVDSLGQRLTLLIDNVIGGGGQRRVSLYCPYWIVNTTEHSLKYRQENFQSFVSGTVSSPERDGSKPV 3382
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BLAST of mRNA_H-canaliculatus_F_contig10621.605.1 vs. uniprot
Match: A0A7S2UDP5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UDP5_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.880e-13
Identity = 33/77 (42.86%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:   31 AAAELGSSVTLTDSVGQRVEVLLENRLGEGGQRNVTVYCPVWMVNTSHYRLRYRQDGQKQMPAGTV-SKAGDGQRPI 258
            +A ++ +  T+ DS+GQR+ + ++N LG GGQR ++++CP W+VNT+ +  RY+QD      +GTV S A DG RP+
Sbjct:  157 SAEDVATETTVVDSLGQRLVLRIDNALGGGGQRKISLFCPFWIVNTTEHSFRYKQDKGSTYVSGTVLSPARDGSRPV 233
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BLAST of mRNA_H-canaliculatus_F_contig10621.605.1 vs. uniprot
Match: A0A7R9UEG4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEG4_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 4.970e-12
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:   55 VTLTDSVGQRVEVLLENRLGEGGQRNVTVYCPVWMVNTSHYRLRYRQDGQKQMPAGTVSK 234
            + L D  GQ++ + +EN LG GGQR V VYCP WMVNT+   +RY ++G   MPAGT  +
Sbjct: 1380 IVLRDIQGQKLHLAIENTLGGGGQRQVVVYCPYWMVNTTGMDIRYHEEGVSAMPAGTAPR 1439
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BLAST of mRNA_H-canaliculatus_F_contig10621.605.1 vs. uniprot
Match: A0A7S4MN01_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MN01_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 9.710e-10
Identity = 28/74 (37.84%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:   40 ELGSSVTLTDSVGQRVEVLLENRLGEGGQRNVTVYCPVWMVNTSHYRLRYRQDGQKQMPAGTV-SKAGDGQRPI 258
            ++ +   + DS+GQR+ + +EN LG GGQR +T++ P W++NT+ + LRY+Q+      +GTV     DG +P+
Sbjct:  937 DIATETAVVDSLGQRLNLGIENILGGGGQRKITLFSPYWILNTTEHSLRYKQEKTSAYVSGTVIDSKRDGSKPV 1010
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10621.605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G8Y9_ECTSI3.680e-6287.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZCW3_9STRA8.950e-1968.52Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A482SP39_9ARCH4.940e-1551.67SHR-BD domain-containing protein n=1 Tax=archaeon ... [more]
K0SGL5_THAOC6.400e-1444.44PDZ domain-containing protein (Fragment) n=1 Tax=T... [more]
B8CBY6_THAPS1.650e-1343.42Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2UDP5_9STRA2.880e-1342.86Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7R9UEG4_9STRA4.970e-1250.00Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S4MN01_9STRA9.710e-1037.84Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10621contigH-canaliculatus_F_contig10621:1781..2942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.9
Seed ortholog evalue5.5e-54
Seed eggNOG ortholog2880.D7G8Y9
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size374
Cds size372
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10621.605.1prot_H-canaliculatus_F_contig10621.605.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10621 1781..2942 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928718.4587028-CDS-H-canaliculatus_F_contig10621:1780..18681622928718.4587028-CDS-H-canaliculatus_F_contig10621:1780..1868Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10621 1781..1868 -
1696845537.8743155-CDS-H-canaliculatus_F_contig10621:1780..18681696845537.8743155-CDS-H-canaliculatus_F_contig10621:1780..1868Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10621 1781..1868 -
1622928718.476597-CDS-H-canaliculatus_F_contig10621:2085..21841622928718.476597-CDS-H-canaliculatus_F_contig10621:2085..2184Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10621 2086..2184 -
1696845537.8874424-CDS-H-canaliculatus_F_contig10621:2085..21841696845537.8874424-CDS-H-canaliculatus_F_contig10621:2085..2184Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10621 2086..2184 -
1622928718.495024-CDS-H-canaliculatus_F_contig10621:2757..29421622928718.495024-CDS-H-canaliculatus_F_contig10621:2757..2942Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10621 2758..2942 -
1696845537.897006-CDS-H-canaliculatus_F_contig10621:2757..29421696845537.897006-CDS-H-canaliculatus_F_contig10621:2757..2942Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10621 2758..2942 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10621.605.1

>prot_H-canaliculatus_F_contig10621.605.1 ID=prot_H-canaliculatus_F_contig10621.605.1|Name=mRNA_H-canaliculatus_F_contig10621.605.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=124bp
GGGGGSGGGRAAAELGSSVTLTDSVGQRVEVLLENRLGEGGQRNVTVYCP
VWMVNTSHYRLRYRQDGQKQMPAGTVSKAGDGQRPIYDNDCMGQRDSRQS
SCFGTPVRGESNSGSTLPPWVIPN
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mRNA from alignment at H-canaliculatus_F_contig10621:1781..2942-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10621.605.1 ID=mRNA_H-canaliculatus_F_contig10621.605.1|Name=mRNA_H-canaliculatus_F_contig10621.605.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1162bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10621:1781..2942- (Hapterophycus canaliculatus Oshoro5f female)
GGAGGAGGCGGCGGCAGCGGTGGTGGGCGAGCGGCAGCAGAGCTCGGATC
GAGCGTCACGCTCACCGACAGCGTGGGGCAGAGGGTAGAAGTCCTCCTCG
AGAACCGCCTTGGCGAGGGCGGGCAGCGGAACGTGACGGTATACTGCCCG
GTTTGGATGGTCAACACGTCCCACTACCGGCTCAGGTGTCCCTATTTCGC
CGTTTGTCTTGCTTTTCTCATGTTTCTCCTCTCAACCTGGGCATATTCCA
CTCGACACGGTGTCTTGCGGAAGCGTGGTGGAAACATCCCCTGATGAAAC
CTCGTCGTGCTCAACACTGAAAACATACTTGATACTCCGTATGATGTATG
GGTAAACCAAGAATTTGCCGCAAATAATAATGGATGCCTACCCTCGCCCA
ACTGGTGTTGAAATTATTTGTGGGTATGGCGTACTCGGCGCTCCCGTAGT
GGACGAGCAGTCGGCCGTGTCTCGTCGGTTGGCGAGGGTGAATCGCTCCG
TTTCGGTCTTGTCTTTCTTGCAGCATCAAGGATTGTCGAATTTTGGAGTC
CAAAGTGTCCAATTCTTCCTGAAATCGGGCGTATTGGGTCGATCGTGGTG
TTGTGCAACCTCAAAATCGGCTTCACCTTGTGTAGATTCTCTTCATCAGT
CCGTGAGTTCTGACGATATTACAGATGGCGTTGCGACAGCACGCTTGGAG
CGGCACGTTTTTCCCTACTAAGCATCGGCCTGGATCCCTTGACTTGCACG
CTGTCCAGGTATCGGCAGGACGGTCAGAAACAGATGCCCGCGGGCACCGT
AAGCAAGGCCGGGGACGGTCAGCGTCCCATCTACGACAACGACTGCATGG
GCCAGAGGTACTCCCAAGTGTTACCCGTCAGGCGCCGGGCATGATGCCAC
AACGCTCGCTTACACTTTGAGTTTGAGGTAGATTACGCTCACGATCTTCA
ATCAATTTTAAACCAAATTTTTACCCTCCAAATAGCCCCCGGGAAAACGC
TCCACGTGTCCGATAATTCTTCGTCTTCCGTGTGCCGGTCTTCCGCCGAA
ACGAAATGACCTTTCTCACTCCAGGGACTCACGCCAAAGCAGCTGCTTTG
GCACACCCGTGAGAGGAGAGAGCAACAGTGGCTCCACCCTTCCCCCATGG
GTGATCCCGAAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10621:1781..2942-

>mRNA_H-canaliculatus_F_contig10621.605.1 ID=mRNA_H-canaliculatus_F_contig10621.605.1|Name=mRNA_H-canaliculatus_F_contig10621.605.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=744bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10621:1781..2942- (Hapterophycus canaliculatus Oshoro5f female)
GGAGGAGGCGGCGGCAGCGGTGGTGGGCGAGCGGCAGCAGAGCTCGGATC
GAGCGTCACGCTCACCGACAGCGTGGGGCAGAGGGTAGAAGTCCTCCTCG
AGAACCGCCTTGGCGAGGGCGGGCAGCGGAACGTGACGGTATACTGCCCG
GTTTGGATGGTCAACACGTCCCACTACCGGCTCAGGGAGGAGGCGGCGGC
AGCGGTGGTGGGCGAGCGGCAGCAGAGCTCGGATCGAGCGTCACGCTCAC
CGACAGCGTGGGGCAGAGGGTAGAAGTCCTCCTCGAGAACCGCCTTGGCG
AGGGCGGGCAGCGGAACGTGACGGTATACTGCCCGGTTTGGATGGTCAAC
ACGTCCCACTACCGGCTCAGGTATCGGCAGGACGGTCAGAAACAGATGCC
CGCGGGCACCGTAAGCAAGGCCGGGGACGGTCAGCGTCCCATCTACGACA
ACGACTGCATGGGCCAGAGGTATCGGCAGGACGGTCAGAAACAGATGCCC
GCGGGCACCGTAAGCAAGGCCGGGGACGGTCAGCGTCCCATCTACGACAA
CGACTGCATGGGCCAGAGGGACTCACGCCAAAGCAGCTGCTTTGGCACAC
CCGTGAGAGGAGAGAGCAACAGTGGCTCCACCCTTCCCCCATGGGTGATC
CCGAACGGACTCACGCCAAAGCAGCTGCTTTGGCACACCCGTGAGAGGAG
AGAGCAACAGTGGCTCCACCCTTCCCCCATGGGTGATCCCGAAC
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