mRNA_H-canaliculatus_F_contig10612.599.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10612.599.1
Unique NamemRNA_H-canaliculatus_F_contig10612.599.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10612.599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10612contigH-canaliculatus_F_contig10612:4018..4725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size708
Cds size567
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10612.599.1prot_H-canaliculatus_F_contig10612.599.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10612 4051..4617 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928717.4947927-UTR-H-canaliculatus_F_contig10612:4017..40501622928717.4947927-UTR-H-canaliculatus_F_contig10612:4017..4050Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10612 4018..4050 +
1696845537.4742591-UTR-H-canaliculatus_F_contig10612:4017..40501696845537.4742591-UTR-H-canaliculatus_F_contig10612:4017..4050Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10612 4018..4050 +
1622928717.5430696-UTR-H-canaliculatus_F_contig10612:4617..47251622928717.5430696-UTR-H-canaliculatus_F_contig10612:4617..4725Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10612 4618..4725 +
1696845537.4943006-UTR-H-canaliculatus_F_contig10612:4617..47251696845537.4943006-UTR-H-canaliculatus_F_contig10612:4617..4725Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10612 4618..4725 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928717.5148482-CDS-H-canaliculatus_F_contig10612:4050..46171622928717.5148482-CDS-H-canaliculatus_F_contig10612:4050..4617Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10612 4051..4617 +
1696845537.4861786-CDS-H-canaliculatus_F_contig10612:4050..46171696845537.4861786-CDS-H-canaliculatus_F_contig10612:4050..4617Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10612 4051..4617 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10612.599.1

>prot_H-canaliculatus_F_contig10612.599.1 ID=prot_H-canaliculatus_F_contig10612.599.1|Name=mRNA_H-canaliculatus_F_contig10612.599.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=189bp
MATTRAASAANAAGEAVSVTPVVLENDTKAPYYGVKYSETAARAFYTRVV
EYEKRVKHANTGGAMQRELAPMAQLIPNPVQRVLARVFKYDYPLSPENLL
VAVRKHAGHEAGANVDLSAASTAVAKAVAMDRQGTTMLERVEPILSGLET
FFEENPNFEALYRSPEGSYIKGPAEIITKALVGGRTVA*
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mRNA from alignment at H-canaliculatus_F_contig10612:4018..4725+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10612.599.1 ID=mRNA_H-canaliculatus_F_contig10612.599.1|Name=mRNA_H-canaliculatus_F_contig10612.599.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=708bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10612:4018..4725+ (Hapterophycus canaliculatus Oshoro5f female)
CGAAGTCGGGCGCGTTGTAGAGTGATTGCCGCGATGGCGACCACTCGAGC
AGCATCAGCTGCTAACGCCGCTGGTGAGGCGGTAAGCGTGACGCCCGTCG
TTTTGGAGAACGACACCAAAGCCCCCTATTATGGGGTGAAGTACTCTGAG
ACTGCGGCGCGAGCTTTCTACACTCGCGTCGTGGAGTACGAAAAGCGCGT
GAAGCATGCTAATACGGGGGGCGCTATGCAGCGCGAGTTGGCGCCGATGG
CGCAACTTATTCCAAATCCCGTGCAGCGAGTTTTGGCCCGTGTCTTCAAA
TACGATTATCCCCTCTCACCGGAGAATCTTCTCGTTGCGGTGAGGAAACA
TGCGGGCCATGAAGCGGGCGCCAACGTGGATTTATCCGCGGCGTCTACCG
CCGTGGCGAAGGCTGTCGCCATGGATAGACAGGGGACGACGATGCTGGAA
AGGGTGGAGCCCATTTTGTCTGGTTTGGAAACTTTCTTCGAAGAAAATCC
GAATTTCGAGGCGCTTTATCGCTCCCCTGAAGGCTCGTATATCAAGGGCC
CGGCTGAGATCATTACAAAGGCGTTGGTTGGTGGAAGGACTGTCGCCTGA
AAAGTTCAAACAAGATGTTATGTTGAAGCTGAGGCACACGGGTGGTTGGA
AGAACGACCCTGACCTCGTCATGGATACCATCGTGGATGCTGCCAAGGAG
TGGCGGAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10612:4018..4725+

>mRNA_H-canaliculatus_F_contig10612.599.1 ID=mRNA_H-canaliculatus_F_contig10612.599.1|Name=mRNA_H-canaliculatus_F_contig10612.599.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1134bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10612:4018..4725+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGACCACTCGAGCAGCATCAGCTGCTAACGCCGCTGGTGAGGCGGT
AAGCGTGACGCCCGTCGTTTTGGAGAACGACACCAAAGCCCCCTATTATG
GGGTGAAGTACTCTGAGACTGCGGCGCGAGCTTTCTACACTCGCGTCGTG
GAGTACGAAAAGCGCGTGAAGCATGCTAATACGGGGGGCGCTATGCAGCG
CGAGTTGGCGCCGATGGCGCAACTTATTCCAAATCCCGTGCAGCGAGTTT
TGGCCCGTGTCTTCAAATACGATTATCCCCTCTCACCGGAGAATCTTCTC
GTTGCGGTGAGGAAACATGCGGGCCATGAAGCGGGCGCCAACGTGGATTT
ATCCGCGGCGTCTACCGCCGTGGCGAAGGCTGTCGCCATGGATAGACAGG
GGACGACGATGCTGGAAAGGGTGGAGCCCATTTTGTCTGGTTTGGAAACT
TTCTTCGAAGAAAATCCGAATTTCGAGGCGCTTTATCGCTCCCCTGAAGG
CTCGTATATCAAGGGCCCGGCTGAGATCATTACAAAGGCGTTGGTTGGTG
GAAGGACTGTCGCCTGAATGGCGACCACTCGAGCAGCATCAGCTGCTAAC
GCCGCTGGTGAGGCGGTAAGCGTGACGCCCGTCGTTTTGGAGAACGACAC
CAAAGCCCCCTATTATGGGGTGAAGTACTCTGAGACTGCGGCGCGAGCTT
TCTACACTCGCGTCGTGGAGTACGAAAAGCGCGTGAAGCATGCTAATACG
GGGGGCGCTATGCAGCGCGAGTTGGCGCCGATGGCGCAACTTATTCCAAA
TCCCGTGCAGCGAGTTTTGGCCCGTGTCTTCAAATACGATTATCCCCTCT
CACCGGAGAATCTTCTCGTTGCGGTGAGGAAACATGCGGGCCATGAAGCG
GGCGCCAACGTGGATTTATCCGCGGCGTCTACCGCCGTGGCGAAGGCTGT
CGCCATGGATAGACAGGGGACGACGATGCTGGAAAGGGTGGAGCCCATTT
TGTCTGGTTTGGAAACTTTCTTCGAAGAAAATCCGAATTTCGAGGCGCTT
TATCGCTCCCCTGAAGGCTCGTATATCAAGGGCCCGGCTGAGATCATTAC
AAAGGCGTTGGTTGGTGGAAGGACTGTCGCCTGA
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