mRNA_H-canaliculatus_F_contig10610.598.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10610.598.1
Unique NamemRNA_H-canaliculatus_F_contig10610.598.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10610.598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10610contigH-canaliculatus_F_contig10610:808..1557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size632
Cds size426
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10610.598.1prot_H-canaliculatus_F_contig10610.598.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10610 808..1233 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928717.3990495-CDS-H-canaliculatus_F_contig10610:807..12331622928717.3990495-CDS-H-canaliculatus_F_contig10610:807..1233Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10610 808..1233 -
1696845537.4487574-CDS-H-canaliculatus_F_contig10610:807..12331696845537.4487574-CDS-H-canaliculatus_F_contig10610:807..1233Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10610 808..1233 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928717.420085-UTR-H-canaliculatus_F_contig10610:1233..12561622928717.420085-UTR-H-canaliculatus_F_contig10610:1233..1256Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10610 1234..1256 -
1696845537.4565387-UTR-H-canaliculatus_F_contig10610:1233..12561696845537.4565387-UTR-H-canaliculatus_F_contig10610:1233..1256Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10610 1234..1256 -
1622928717.4515483-UTR-H-canaliculatus_F_contig10610:1376..15571622928717.4515483-UTR-H-canaliculatus_F_contig10610:1376..1557Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10610 1377..1557 -
1696845537.4640298-UTR-H-canaliculatus_F_contig10610:1376..15571696845537.4640298-UTR-H-canaliculatus_F_contig10610:1376..1557Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10610 1377..1557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10610.598.1

>prot_H-canaliculatus_F_contig10610.598.1 ID=prot_H-canaliculatus_F_contig10610.598.1|Name=mRNA_H-canaliculatus_F_contig10610.598.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=142bp
MSGLSAPGAIVYFFEGNPHSDHSHRGWPLLCAPAGSFQGVSHLGFAHVPG
TIRCHRRPNTPVRTVFAGDLPSRSPVLAGVLPAPLLPSWHGGLGTRVPPR
RRPKTSPTHTRPRRCFWPLSARCFQPPFLILCTRFVLLNLHP
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mRNA from alignment at H-canaliculatus_F_contig10610:808..1557-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10610.598.1 ID=mRNA_H-canaliculatus_F_contig10610.598.1|Name=mRNA_H-canaliculatus_F_contig10610.598.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=750bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10610:808..1557- (Hapterophycus canaliculatus Oshoro5f female)
GGATGCTCGGACACGGAGGGGATGAGGGGGGAGTTGGAATATTGTTAGCG
GCGTGGCTCGAGGGTGTGCGGGTTTTTTTGTGTTGTTGTGTTGGTGTCGT
CGTCTATTGGGAGCTGAGTGTTCTGCGCCTCATCGCGGCGGGTCGAATTG
CCACGACGCCAGGAACGAGCGCTTGTTTGCAGCTTGTCTGTCTGATCGAG
CACGCGTGCCCCCGGGGCACTCTGCAAATGTCAATCTCCGCAGATGGGAA
AGCACAGCATTTGGGGTAAAGTATCCGGGGAATACTCATCCCTGCACCCA
GTTTTTTGCCGTAAAAGTGGTTGGATGTCAGGTCTGTCTGCCCCCGGGGC
TATCGTGTACTTTTTCGAAGGCAACCCCCACTCTGATCATTCCCACCGTG
GATGGCCTCTATTGTGCGCACCTGCGGGTTCGTTCCAAGGTGTTTCCCAC
TTGGGATTCGCACATGTTCCAGGGACCATCCGCTGCCATCGTCGTCCCAA
TACACCCGTCCGTACGGTGTTTGCTGGAGACCTCCCCTCCCGCTCTCCTG
TTCTAGCTGGTGTCTTACCTGCTCCTCTGCTGCCGTCATGGCACGGCGGG
CTGGGCACGCGCGTCCCTCCACGACGCCGGCCGAAGACCTCTCCTACCCA
TACACGACCCCGCCGTTGTTTCTGGCCCCTCTCTGCGCGGTGCTTCCAGC
CACCCTTTCTCATCCTGTGCACCCGTTTTGTCTTGCTCAACTTGCATCCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10610:808..1557-

>mRNA_H-canaliculatus_F_contig10610.598.1 ID=mRNA_H-canaliculatus_F_contig10610.598.1|Name=mRNA_H-canaliculatus_F_contig10610.598.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=852bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10610:808..1557- (Hapterophycus canaliculatus Oshoro5f female)
ATGTCAGGTCTGTCTGCCCCCGGGGCTATCGTGTACTTTTTCGAAGGCAA
CCCCCACTCTGATCATTCCCACCGTGGATGGCCTCTATTGTGCGCACCTG
CGGGTTCGTTCCAAGGTGTTTCCCACTTGGGATTCGCACATGTTCCAGGG
ACCATCCGCTGCCATCGTCGTCCCAATACACCCGTCCGTACGGTGTTTGC
TGGAGACCTCCCCTCCCGCTCTCCTGTTCTAGCTGGTGTCTTACCTGCTC
CTCTGCTGCCGTCATGGCACGGCGGGCTGGGCACGCGCGTCCCTCCACGA
CGCCGGCCGAAGACCTCTCCTACCCATACACGACCCCGCCGTTGTTTCTG
GCCCCTCTCTGCGCGGTGCTTCCAGCCACCCTTTCTCATCCTGTGCACCC
GTTTTGTCTTGCTCAACTTGCATCCGATGTCAGGTCTGTCTGCCCCCGGG
GCTATCGTGTACTTTTTCGAAGGCAACCCCCACTCTGATCATTCCCACCG
TGGATGGCCTCTATTGTGCGCACCTGCGGGTTCGTTCCAAGGTGTTTCCC
ACTTGGGATTCGCACATGTTCCAGGGACCATCCGCTGCCATCGTCGTCCC
AATACACCCGTCCGTACGGTGTTTGCTGGAGACCTCCCCTCCCGCTCTCC
TGTTCTAGCTGGTGTCTTACCTGCTCCTCTGCTGCCGTCATGGCACGGCG
GGCTGGGCACGCGCGTCCCTCCACGACGCCGGCCGAAGACCTCTCCTACC
CATACACGACCCCGCCGTTGTTTCTGGCCCCTCTCTGCGCGGTGCTTCCA
GCCACCCTTTCTCATCCTGTGCACCCGTTTTGTCTTGCTCAACTTGCATC
CG
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