mRNA_H-canaliculatus_F_contig10603.589.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10603.589.1
Unique NamemRNA_H-canaliculatus_F_contig10603.589.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10603.589.1 vs. uniprot
Match: D7FUR7_ECTSI (SET and MYND domain containing 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUR7_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 7.950e-53
Identity = 171/372 (45.97%), Postives = 203/372 (54.57%), Query Frame = 2 
Query:   26 DTEELISGGWICPQRPCCGYGRVLPPLPSAGXXXXXXXXCSRSVGGESLPVSQERGEREDMDGGEGQGEXXXXXXXXXXXXXXXGNEGCVSWRGRCADCGGRTREAYFERWTNLLQERLAAADGDMTSGRVRRGRRRLAGVQALCERRLAPHHAFSLGVHCRLSLAAAVDRDWAATISHAERALGDMQALRAGVGGGAVPGANGXXXXXXXXXXXXXXXXXSSDHSPGENREGGADGGGNYRAEVGTGGGRSXXXXXXXXXXXXXCDRGGAANTSAGRCERKRGRDGGRSRXXXXXXXXXXXXXXSSAGMSPGVSIHATAMWEAILVEALDRALPLSGRGHERETELHRSRMRSAQRAIAILGLDRRSLVAL 1141
            D EE++SG W+CP+R CCG GRVLPPL +AG             GG +              GGE Q E                  G    R RC DCGG T EAYF+RWT LL+ +  AAD D+  GRVR GRR+LA +Q LCERRL+PH++FSLGVHCRLSLAAAVDRDW  TI+HAERALG M+ + + + GG              XXXXXX    + D       EGG           G  GGR   XXXXXXXXXXX                            XXXXXXXXXX  ++A +S    + ATA+WEAILVE LDR LPL+GR    ETELHR+R+  A+R + +LGL R SLV L
Sbjct:  348 DREEMVSGAWVCPKRACCGNGRVLPPLSTAGR------------GGAA--------------GGEAQLEVRPHGW------------GAQQARCRCVDCGGVTGEAYFDRWTELLRAKQTAADDDLAGGRVREGRRKLADLQVLCERRLSPHNSFSLGVHCRLSLAAAVDRDWPTTIAHAERALGCMRRIASEIEGGXXX-----------XXXXXXLSAGAIDRGTCVGEEGGD----------GIRGGRGSDXXXXXXXXXXXXX--------------------------XXXXXXXXXXSFTTAVVSSECPLLATAIWEAILVEVLDRVLPLAGR--HCETELHRARVAFAERVVGVLGLRRSSLVTL 632
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10603.589.1 vs. uniprot
Match: A0A6H5JQS4_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQS4_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 8.880e-23
Identity = 60/142 (42.25%), Postives = 73/142 (51.41%), Query Frame = 2 
Query:   26 DTEELISGGWICPQRPCCGYGRVLPPLPSAGXXXXXXXXCSRSVGGESLPVSQERGEREDMDGGEGQGEXXXXXXXXXXXXXXXGNEGCVSWRGRCADCGGRTREAYFERWTNLLQERLAAADGDMTSGRVRRGRRRLAGVQ 451
            D EE++SG W+CP+R CCG GRVLPPL +AG            +GG  L V + RG                               G    R RC DCGG T EAYF+RWT LL+ + AAAD D+  GRVR GRR+LA +Q
Sbjct:  149 DREEMVSGAWVCPKRGCCGKGRVLPPLSTAGRGGAAGGEAQ--LGGTQLGVWRHRG-------------------------------GAQQARCRCVDCGGVTEEAYFDRWTELLRAKQAAADDDLAGGRVREGRRKLADLQ 257
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10603.589.1 vs. uniprot
Match: A0A6H5KQZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ9_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 4.600e-10
Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 2 
Query:  941 SSAGMSPGVSIHATAMWEAILVEALDRALPLSGRGHERETELHRSRMRSAQRAIAILGLDRRSLVAL 1141
            ++A +S    + AT +WEAILVE LDR LPL+GR  E ETE HR+R+  A+R + +LGL R SLV L
Sbjct:   56 TTAMVSSECPLLATGIWEAILVEVLDRVLPLAGRHCETETEAHRARVAFAERVVGVLGLRRSSLVTL 122
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10603.589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FUR7_ECTSI7.950e-5345.97SET and MYND domain containing 3 n=1 Tax=Ectocarpu... [more]
A0A6H5JQS4_9PHAE8.880e-2342.25SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KQZ9_9PHAE4.600e-1053.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10603contigH-canaliculatus_F_contig10603:2065..4729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.8
Seed ortholog evalue1.6e-38
Seed eggNOG ortholog2880.D7FUR7
KEGG koko:K11426
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG2084@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size1645
Cds size942
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10603.589.1prot_H-canaliculatus_F_contig10603.589.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10603 2563..4524 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928716.055686-UTR-H-canaliculatus_F_contig10603:2064..25621622928716.055686-UTR-H-canaliculatus_F_contig10603:2064..2562Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10603 2065..2562 -
1696845536.4602976-UTR-H-canaliculatus_F_contig10603:2064..25621696845536.4602976-UTR-H-canaliculatus_F_contig10603:2064..2562Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10603 2065..2562 -
1622928716.115222-UTR-H-canaliculatus_F_contig10603:4524..47291622928716.115222-UTR-H-canaliculatus_F_contig10603:4524..4729Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10603 4525..4729 -
1696845536.5011005-UTR-H-canaliculatus_F_contig10603:4524..47291696845536.5011005-UTR-H-canaliculatus_F_contig10603:4524..4729Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10603 4525..4729 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928716.0738113-CDS-H-canaliculatus_F_contig10603:2562..27241622928716.0738113-CDS-H-canaliculatus_F_contig10603:2562..2724Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10603 2563..2724 -
1696845536.474105-CDS-H-canaliculatus_F_contig10603:2562..27241696845536.474105-CDS-H-canaliculatus_F_contig10603:2562..2724Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10603 2563..2724 -
1622928716.0885713-CDS-H-canaliculatus_F_contig10603:3226..37601622928716.0885713-CDS-H-canaliculatus_F_contig10603:3226..3760Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10603 3227..3760 -
1696845536.4834924-CDS-H-canaliculatus_F_contig10603:3226..37601696845536.4834924-CDS-H-canaliculatus_F_contig10603:3226..3760Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10603 3227..3760 -
1622928716.100938-CDS-H-canaliculatus_F_contig10603:4278..45241622928716.100938-CDS-H-canaliculatus_F_contig10603:4278..4524Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10603 4279..4524 -
1696845536.4921184-CDS-H-canaliculatus_F_contig10603:4278..45241696845536.4921184-CDS-H-canaliculatus_F_contig10603:4278..4524Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10603 4279..4524 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10603.589.1

>prot_H-canaliculatus_F_contig10603.589.1 ID=prot_H-canaliculatus_F_contig10603.589.1|Name=mRNA_H-canaliculatus_F_contig10603.589.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=314bp
MDGGEGQGEEDEEGKETGSPGGEGGNEGCVSWRGRCADCGGRTREAYFER
WTNLLQERLAAADGDMTSGRVRRGRRRLAGVQALCERRLAPHHAFSLGVH
CRLSLAAAVDRDWAATISHAERALGDMQALRAGVGGGAVPGANGGGCGGG
GGGGGGQGEGRSSDHSPGENREGGADGGGNYRAEVGTGGGRSGAGGGGGG
GGGGGCDRGGAANTSAGRCERKRGRDGGRSRGGRSGEGASGRGGGSSAGM
SPGVSIHATAMWEAILVEALDRALPLSGRGHERETELHRSRMRSAQRAIA
ILGLDRRSLVALG*
back to top

mRNA from alignment at H-canaliculatus_F_contig10603:2065..4729-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10603.589.1 ID=mRNA_H-canaliculatus_F_contig10603.589.1|Name=mRNA_H-canaliculatus_F_contig10603.589.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2665bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10603:2065..4729- (Hapterophycus canaliculatus Oshoro5f female)
GGGTGGTGTTGGGGGTGGCGGTGGTGACACGGAAGAACTCATTTCAGGGG
GTTGGATCTGCCCGCAGAGACCGTGCTGCGGGTATGGGAGGGTGCTCCCG
CCTTTGCCAAGCGCAGGAGGGGGAGGGGGTGGTGGCGGCGGCTGCAGCAG
AAGCGTCGGCGGCGAGTCGCTGCCGGTGTCGCAAGAGCGCGGGGAACGGG
AGGATATGGACGGAGGAGAGGGACAGGGAGAGGAAGACGAGGAGGGGAAG
GAAACAGGTAGCCCGGGAGGGGAAGGGGGAAACGAAGGCTGCGTGTCGTG
GCGAGGCCGTTGTGCGGACTGCGGGGGGCGCACAAGAGAGGCGTATTTCG
AGCGCTGGACGAACCTGCTGCAGGAGAGACTGGCCGCAGCGGACGGGGAC
ATGACCAGCGGCAGAGTGAGGCGGGGACGGCGAAGGCTTGCGGGCGTTCA
GGTGCGTTCAGGGGGCGGCCATGGGTGGAACGTAACATGGAAACGACGCA
AAAAAGTTTTCGAAGAGGGTTTCGGATCGTGCCCTCGCATGCGACAGCGT
TTTCTGAACTGGCGAAGCCTCCACGCATGGCCCCTTCGACAGCTGGGTCT
TCATCTGGCTTGAAGGAGCTGTCAGAGAAAATTCGTAGTGAGAGTCATTG
CAGGCTTCTCTACGGCTGGGGGGGATTGTTGGGGTTGACTCAAGCCAGCC
TAGTGCCTCCAGGGTGCGCGAGACTTCACGGACTGTGCTTTCTGACCGAT
CTGAAGACATCGAGGTCCCTTCGAGTCAGCATCAACTTAGACCAGCCAGG
AGCATCGCCTAGGTCTGTCTTTCTTCGCAAGCGCGGTAGCAACAGCCGCG
CACGACCTGAAGCCGGTCTTTTTCTTCATCCCGCTTGCCTTCGTCTAACC
TCACGCCTTCAACGACACCCATCACTCTCCCTGCCCCCCCCTCCCCCCTC
CCCCTCTCTCTCCGAGGAGGCGTTATGCGAGAGGCGCCTCGCACCCCACC
ACGCCTTCTCCTTGGGAGTGCACTGTCGGCTTTCGCTGGCTGCGGCCGTC
GACCGAGACTGGGCGGCCACGATTTCTCACGCAGAGCGTGCCCTCGGCGA
TATGCAGGCACTCCGCGCCGGTGTCGGAGGTGGAGCGGTGCCAGGGGCCA
ACGGCGGGGGCTGCGGCGGCGGCGGCGGCGGCGGCGGCGGTCAAGGCGAA
GGCCGCAGCAGCGATCACTCGCCCGGTGAAAACCGAGAAGGGGGGGCCGA
CGGCGGCGGTAACTACCGCGCAGAGGTGGGGACGGGCGGAGGTCGTAGCG
GTGCAGGCGGCGGTGGCGGCGGTGGCGGCGGCGGCGGCTGCGATCGTGGC
GGTGCTGCTAACACGAGTGCTGGCCGATGCGAGCGCAAACGTGGGAGGGA
TGGAGGCAGGAGTCGCGGCGGGAGAAGCGGCGAGGGTGCAAGCGGGCGGG
GCGGCGGCTCTTCTGCCGGGATGTCTCCAGGCGTCTCGATTCATGCCACA
GCGGTGAGGAGCGCGCGTTCACCTCGGGCAGCTCGGCCGTCATTCAACTG
GGGGGCGTGAGATGCGCGCTAGCGTCTGCTGAACCCTCAGGTTCTTTCTC
CCGCGCAAAGGTTGTTGTGCGTGCGGCTGTGCGTACGGACTCCAAGTGCG
ACGCTGGTTCCCACTCCCTCCCGCCAAGAAGTGAACATGTTCGCACACAA
GATCGCAAGGCGCAAACGGTACCTTGGGGCATCCGATCGTTCCTGACTGG
TGGTTTCAGGAAAAAGAGGTGGTGATTCACGCCTCCGGAAAGACGCCGGT
AGTATTGTAGTCGACGGTCAGATCCGTAAGGCCGAGCAAAGAACGAGTGT
CCGCCCGGCCCCCCTTGCTCCCTTCTCTTCCCCCCCCCCATGATCAAAGG
GCTCCTGGTCTCAGACGAGAGTACCCTCCCTCCCCCCCCCGGCCGTTCAA
CCACCTCGTTCTCTTTTGTGTGTTCTTCCCCTACCCGTGACGGCACAACA
CTTAGATGTGGGAGGCGATTCTCGTGGAGGCTCTTGATCGCGCGCTGCCC
CTGTCAGGCCGAGGCCACGAGAGGGAGACGGAGCTGCACAGATCGAGAAT
GCGCTCCGCCCAGCGAGCGATTGCTATCTTAGGGCTGGACCGTAGAAGTC
TTGTAGCTCTGGGTTGAAAAAAGAGGGTGCGTGAGGACCAGAGCGTGTGT
CGTACTCGAGTATAGAACGCCGGTTGTGATACTTGTGAGATGCCTGTGCG
GCGTGAGAGAAGGGGTGCTGCTGTGGGTATGGGGGTGCGAGATGGAGATC
ACGAGCGAGATTGCAAGGAACCACCGGGGAGGTGCAGCGTTGTGCTGCCA
GTGTGATGGTCAGAGACTCTAGTCTGAACGTCCAACGACGTACCGGTGGA
CTAGGGCAGTCGCGACACAGCCGTTCTTTGCACCCCGATGAACGGCGGGC
GAGAAGGAAGACAAACCAGTACAAGTATACATTCTGATTGTTTTTTTAAT
CTACCGCTACATTTGAATGGGGCGGGGACGCATCCGTGCCTACAGTAAGA
TACGAAGAACGTTGAGCGGGTCAACGCGGTCTGCTGGTAAAGTGCTGGGC
TGCTCCGAAGGTCGTGCTATCTGTCTTCGGGGTCAATCCTGATTCGTTCG
GAGTCTCACACATCT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10603:2065..4729-

>mRNA_H-canaliculatus_F_contig10603.589.1 ID=mRNA_H-canaliculatus_F_contig10603.589.1|Name=mRNA_H-canaliculatus_F_contig10603.589.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1884bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10603:2065..4729- (Hapterophycus canaliculatus Oshoro5f female)
ATGGACGGAGGAGAGGGACAGGGAGAGGAAGACGAGGAGGGGAAGGAAAC
AGGTAGCCCGGGAGGGGAAGGGGGAAACGAAGGCTGCGTGTCGTGGCGAG
GCCGTTGTGCGGACTGCGGGGGGCGCACAAGAGAGGCGTATTTCGAGCGC
TGGACGAACCTGCTGCAGGAGAGACTGGCCGCAGCGGACGGGGACATGAC
CAGCGGCAGAGTGAGGCGGGGACGGCGAAGGCTTGCGGGCGTTCAGATGG
ACGGAGGAGAGGGACAGGGAGAGGAAGACGAGGAGGGGAAGGAAACAGGT
AGCCCGGGAGGGGAAGGGGGAAACGAAGGCTGCGTGTCGTGGCGAGGCCG
TTGTGCGGACTGCGGGGGGCGCACAAGAGAGGCGTATTTCGAGCGCTGGA
CGAACCTGCTGCAGGAGAGACTGGCCGCAGCGGACGGGGACATGACCAGC
GGCAGAGTGAGGCGGGGACGGCGAAGGCTTGCGGGCGTTCAGGCGTTATG
CGAGAGGCGCCTCGCACCCCACCACGCCTTCTCCTTGGGAGTGCACTGTC
GGCTTTCGCTGGCTGCGGCCGTCGACCGAGACTGGGCGGCCACGATTTCT
CACGCAGAGCGTGCCCTCGGCGATATGCAGGCACTCCGCGCCGGTGTCGG
AGGTGGAGCGGTGCCAGGGGCCAACGGCGGGGGCTGCGGCGGCGGCGGCG
GCGGCGGCGGCGGTCAAGGCGAAGGCCGCAGCAGCGATCACTCGCCCGGT
GAAAACCGAGAAGGGGGGGCCGACGGCGGCGGTAACTACCGCGCAGAGGT
GGGGACGGGCGGAGGTCGTAGCGGTGCAGGCGGCGGTGGCGGCGGTGGCG
GCGGCGGCGGCTGCGATCGTGGCGGTGCTGCTAACACGAGTGCTGGCCGA
TGCGAGCGCAAACGTGGGAGGGATGGAGGCAGGAGTCGCGGCGGGAGAAG
CGGCGAGGGTGCAAGCGGGCGGGGCGGCGGCTCTTCTGCCGGGATGTCTC
CAGGCGTCTCGATTCATGCCACAGCGGCGTTATGCGAGAGGCGCCTCGCA
CCCCACCACGCCTTCTCCTTGGGAGTGCACTGTCGGCTTTCGCTGGCTGC
GGCCGTCGACCGAGACTGGGCGGCCACGATTTCTCACGCAGAGCGTGCCC
TCGGCGATATGCAGGCACTCCGCGCCGGTGTCGGAGGTGGAGCGGTGCCA
GGGGCCAACGGCGGGGGCTGCGGCGGCGGCGGCGGCGGCGGCGGCGGTCA
AGGCGAAGGCCGCAGCAGCGATCACTCGCCCGGTGAAAACCGAGAAGGGG
GGGCCGACGGCGGCGGTAACTACCGCGCAGAGGTGGGGACGGGCGGAGGT
CGTAGCGGTGCAGGCGGCGGTGGCGGCGGTGGCGGCGGCGGCGGCTGCGA
TCGTGGCGGTGCTGCTAACACGAGTGCTGGCCGATGCGAGCGCAAACGTG
GGAGGGATGGAGGCAGGAGTCGCGGCGGGAGAAGCGGCGAGGGTGCAAGC
GGGCGGGGCGGCGGCTCTTCTGCCGGGATGTCTCCAGGCGTCTCGATTCA
TGCCACAGCGATGTGGGAGGCGATTCTCGTGGAGGCTCTTGATCGCGCGC
TGCCCCTGTCAGGCCGAGGCCACGAGAGGGAGACGGAGCTGCACAGATCG
AGAATGCGCTCCGCCCAGCGAGCGATTGCTATCTTAGGGCTGGACCGTAG
AAGTCTTGTAGCTCTGGGTTGAATGTGGGAGGCGATTCTCGTGGAGGCTC
TTGATCGCGCGCTGCCCCTGTCAGGCCGAGGCCACGAGAGGGAGACGGAG
CTGCACAGATCGAGAATGCGCTCCGCCCAGCGAGCGATTGCTATCTTAGG
GCTGGACCGTAGAAGTCTTGTAGCTCTGGGTTGA
back to top