mRNA_H-canaliculatus_F_contig106.582.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig106.582.1
Unique NamemRNA_H-canaliculatus_F_contig106.582.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig106.582.1 vs. uniprot
Match: D7FMC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMC6_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 3.950e-58
Identity = 100/118 (84.75%), Postives = 109/118 (92.37%), Query Frame = 1 
Query:    1 MSKGRTLDDAEDMLAEGIFRSLVGGVTGMIATTDGIARTQEALLSTSRGLLEAELRLHDTARQADAINGRSDKIRETCVALERVSDRLAALRRRASVLEAELEADGCVAGDGVSELCL 354
            MSK R+L+DAEDMLAEGIFRSL+GGVT MIATTD +ARTQ+ LL+TSRGLLE ELRLHDTARQADAI  R+DKIR+TC ALERV+DRLAALRRRA VLEAELEADGCVAGDGVSELCL
Sbjct:    1 MSKARSLEDAEDMLAEGIFRSLIGGVTDMIATTDRLARTQDDLLATSRGLLE-ELRLHDTARQADAIEARADKIRQTCAALERVTDRLAALRRRAQVLEAELEADGCVAGDGVSELCL 117
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BLAST of mRNA_H-canaliculatus_F_contig106.582.1 vs. uniprot
Match: A0A6H5J974_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J974_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 4.640e-48
Identity = 87/109 (79.82%), Postives = 97/109 (88.99%), Query Frame = 1 
Query:   28 AEDMLAEGIFRSLVGGVTGMIATTDGIARTQEALLSTSRGLLEAELRLHDTARQADAINGRSDKIRETCVALERVSDRLAALRRRASVLEAELEADGCVAGDGVSELCL 354
            AE    +GIFRSL+GGVT MIATTD +A+TQ+ LL+TSRGLLE ELRLHDTARQADAI  R+DKIR+TC ALERV+DRLAALRRRA VLEAELEADGCVAGDGVS+LCL
Sbjct:    4 AEVARTQGIFRSLIGGVTDMIATTDSLAQTQDDLLATSRGLLE-ELRLHDTARQADAIETRADKIRQTCAALERVTDRLAALRRRAQVLEAELEADGCVAGDGVSDLCL 111
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig106.582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMC6_ECTSI3.950e-5884.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J974_9PHAE4.640e-4879.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig106contigH-canaliculatus_F_contig106:37576..39717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_003470.1
Exons4
Model size711
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig106.582.1prot_H-canaliculatus_F_contig106.582.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig106 37930..39717 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928714.942701-UTR-H-canaliculatus_F_contig106:37575..379291622928714.942701-UTR-H-canaliculatus_F_contig106:37575..37929Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig106 37576..37929 -
1696845535.81702-UTR-H-canaliculatus_F_contig106:37575..379291696845535.81702-UTR-H-canaliculatus_F_contig106:37575..37929Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig106 37576..37929 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928714.9618225-CDS-H-canaliculatus_F_contig106:37929..380671622928714.9618225-CDS-H-canaliculatus_F_contig106:37929..38067Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig106 37930..38067 -
1696845535.8460903-CDS-H-canaliculatus_F_contig106:37929..380671696845535.8460903-CDS-H-canaliculatus_F_contig106:37929..38067Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig106 37930..38067 -
1622928714.9764705-CDS-H-canaliculatus_F_contig106:38427..384891622928714.9764705-CDS-H-canaliculatus_F_contig106:38427..38489Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig106 38428..38489 -
1696845535.8577974-CDS-H-canaliculatus_F_contig106:38427..384891696845535.8577974-CDS-H-canaliculatus_F_contig106:38427..38489Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig106 38428..38489 -
1622928714.9917188-CDS-H-canaliculatus_F_contig106:38971..390801622928714.9917188-CDS-H-canaliculatus_F_contig106:38971..39080Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig106 38972..39080 -
1696845535.867638-CDS-H-canaliculatus_F_contig106:38971..390801696845535.867638-CDS-H-canaliculatus_F_contig106:38971..39080Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig106 38972..39080 -
1622928715.0065234-CDS-H-canaliculatus_F_contig106:39669..397171622928715.0065234-CDS-H-canaliculatus_F_contig106:39669..39717Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig106 39670..39717 -
1696845535.8776414-CDS-H-canaliculatus_F_contig106:39669..397171696845535.8776414-CDS-H-canaliculatus_F_contig106:39669..39717Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig106 39670..39717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig106.582.1

>prot_H-canaliculatus_F_contig106.582.1 ID=prot_H-canaliculatus_F_contig106.582.1|Name=mRNA_H-canaliculatus_F_contig106.582.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=119bp
MSKGRTLDDAEDMLAEGIFRSLVGGVTGMIATTDGIARTQEALLSTSRGL
LEAELRLHDTARQADAINGRSDKIRETCVALERVSDRLAALRRRASVLEA
ELEADGCVAGDGVSELCL*
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mRNA from alignment at H-canaliculatus_F_contig106:37576..39717-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig106.582.1 ID=mRNA_H-canaliculatus_F_contig106.582.1|Name=mRNA_H-canaliculatus_F_contig106.582.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2142bp|location=Sequence derived from alignment at H-canaliculatus_F_contig106:37576..39717- (Hapterophycus canaliculatus Oshoro5f female)
ATGAGCAAGGGCAGAACTCTCGATGATGCAGAAGACATGCTTGCCGAGGT
ATGTAGACTATAGAAGGATAATTTCCATCGGTACCTCTGCCCCGGGTTCA
AAATTCGAAAATCCCGGCTGTCTGCTGTTTGAATGTTGCCCTTAGTTGAC
TTCAGTGACATGATGACACGTTGAACTTATGCTCGCTGTCCACTCCAGAC
TCCAGACTTGTGCTTGTAGCTCGCTGTGTCCGTGTTCTGTGGACAGCAAC
AGATTCTCCGAACGCACAAATGGTTGCAAATCGTCTGCGCAGGGGTGTAC
CCTTGACGTTCACTCGTGCGCTGTACAGACAAGGTTTCAGAGCACAACCT
TGTCCGCAAGGTCCGTACGGTGCCGACAGGAATTCGAACGCCTCCGACCA
AGGCCCCTGTCATAAAAATAACACCACCTAAAGGCTAAATACAGGCACGG
CACCGAGGAAGATTCTTCCTGCGGCGACGTCAAACTCTGCTGCCATATGT
CCTGTCAAATCCTCAGCTTTCTTATTGCAGTCAACAACGACCTGTCATCA
TTTGTGCTTCAGCAGTGTCTGCCTGACATGAGATCACGCTTATCTTCTTC
CCTCCGCCCCCCTCCTCATCACGATGTGGATCCAAAGGGCATCTTCCGTA
GCCTGGTGGGAGGTGTAACCGGCATGATAGCCACCACGGACGGTATCGCG
AGAACGCAAGAAGCTCTTTTATCGACCAGCAGGGGTCTCTTGGAAGGTGA
GCTTTGACACACTCCTTGACAGCGTCACGGCGCAACGCCCGGCCGGCTAC
AAAAGTTGAAGTTGTCGTGACTTGTGCTAAGTTTACCCAGCCACAGCATT
TACGGGCAGATCTATCTCGATTTATGTCAGCCGAAAAAGGATGCTTGTCC
CTGGTCGTCGTCTGTGTGTGTTTTGTTAGACCGGTATCAAAAAATCTCTG
ACAAACACCAACACCAACCCCAACTCCAACACACCAACACCACACAAGCC
TTGGTGCGTTGCGACCCCCCCACCCCCCCGCCCCCTCTGTGGCGTAAATT
TGCGTGCTCGCGGGGGGGGAGGGGTAGTCAGGCGTGTTGACCAAAATTGG
TAAACTTGTGCTTTGACTCTACAGCTCCTTTCGAGGCAGGTGGTGGAGGG
CGATGGACGTCATGACTAAAGCTCTTCGTCGCCGTCGGCTGCTTGCATGT
GTGCTTTCTTTGCCCGCTGTCTTCCCAGCAGAGCTGAGATTGCACGACAC
TGCTCGACAGGCGGACGCGATCAACGGAAGATCAGACAAGGTGAACGCCG
ACGATTGGGTGGATTTTTAGGCGGCGCGCGGCATGTGCACGTTTACATTC
CGCCTCCGTCGGTTCGTCAAAACTGCGCCATGTACTCGCACACGCCGCAG
ATTTCCAGAAAGCGTTCGATATGTTGTACTTCGTTCGAGGCTACGGGTGT
CCGCAGAACACCTGCAAAAGGCCCCCATGCGCAGCATCGTGTCGACAACG
ACAGCGGCGCTTCACAACGGCGAGGCAAGCAGGCGCCACCACGCTTGTAG
TGCGCTCTTCTTATCTGCTTCGAGTGGACGATAATCTCTTGCGGGGTCTC
AGGTGCCGCCATGTACACCCTGCCCTGCCCTGCCCGCGCCTCCCGCGCAG
ATTCGCGAAACTTGCGTGGCTCTGGAGAGGGTGAGCGACCGGCTCGCTGC
TTTGAGGCGCCGGGCGTCCGTGCTGGAGGCAGAGCTTGAGGCCGATGGCT
GCGTGGCGGGCGACGGAGTGTCCGAGCTTTGCCTCTGATTCGTTTTCCAG
AGCTCCAAAAGGGGGAGCGGGGAAATTTTCGAGGAACCGCCGGCGGCACT
CGACCGCCCGCTCACGCGCAAGCAAAGCAGCACGGGGCAACGATGGCACG
TGCGCCGGAGTTGTTCGAGTTGCCGGTTGAGCTTCTGCGTGTGTAGGCTA
TCCGCGACGTTGTCTCTTTGTTGAGGACGGGATGCGCTGGTGACCGTGGT
CGGAAAGAACCAGGGCTTGAGCCGACGGCGGTGGTAAAAGACGCGAGCGT
ACGTTGTTGCTGAGAACAAGAGAGACCGACGCGCAAGCGAACGACTCTGG
CTCCGGCAGGGGAGGAGGCGTTTCGCGTCTCGCCGCGACGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig106:37576..39717-

>mRNA_H-canaliculatus_F_contig106.582.1 ID=mRNA_H-canaliculatus_F_contig106.582.1|Name=mRNA_H-canaliculatus_F_contig106.582.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=714bp|location=Sequence derived from alignment at H-canaliculatus_F_contig106:37576..39717- (Hapterophycus canaliculatus Oshoro5f female)
ATGAGCAAGGGCAGAACTCTCGATGATGCAGAAGACATGCTTGCCGAGAT
GAGCAAGGGCAGAACTCTCGATGATGCAGAAGACATGCTTGCCGAGGGCA
TCTTCCGTAGCCTGGTGGGAGGTGTAACCGGCATGATAGCCACCACGGAC
GGTATCGCGAGAACGCAAGAAGCTCTTTTATCGACCAGCAGGGGTCTCTT
GGAAGGGCATCTTCCGTAGCCTGGTGGGAGGTGTAACCGGCATGATAGCC
ACCACGGACGGTATCGCGAGAACGCAAGAAGCTCTTTTATCGACCAGCAG
GGGTCTCTTGGAAGCAGAGCTGAGATTGCACGACACTGCTCGACAGGCGG
ACGCGATCAACGGAAGATCAGACAAGCAGAGCTGAGATTGCACGACACTG
CTCGACAGGCGGACGCGATCAACGGAAGATCAGACAAGATTCGCGAAACT
TGCGTGGCTCTGGAGAGGGTGAGCGACCGGCTCGCTGCTTTGAGGCGCCG
GGCGTCCGTGCTGGAGGCAGAGCTTGAGGCCGATGGCTGCGTGGCGGGCG
ACGGAGTGTCCGAGCTTTGCCTCTGAATTCGCGAAACTTGCGTGGCTCTG
GAGAGGGTGAGCGACCGGCTCGCTGCTTTGAGGCGCCGGGCGTCCGTGCT
GGAGGCAGAGCTTGAGGCCGATGGCTGCGTGGCGGGCGACGGAGTGTCCG
AGCTTTGCCTCTGA
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