mRNA_H-canaliculatus_F_contig10022.58.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10022.58.1
Unique NamemRNA_H-canaliculatus_F_contig10022.58.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10022.58.1 vs. uniprot
Match: A0A6H5L3X6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X6_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 1.750e-37
Identity = 74/95 (77.89%), Postives = 81/95 (85.26%), Query Frame = 2 
Query:   98 SDGEFSVDMDMLDDITSDEGFELGEMEILLAAAKGRQTLPAKAFSLARLLFRRALPVSFADTRDARMLLMSRARGAGRDRAMHNFENLLTVCTDD 382
            SDG+FSVDMD++DD+T+DEGFELGEMEILLAA K RQTL AKA SL RLL RRALP SF DTRDA MLLMSRAR AGR++AM  FENLLTV T D
Sbjct:  143 SDGQFSVDMDIVDDVTNDEGFELGEMEILLAAVKARQTLAAKAASLGRLLARRALPTSFTDTRDAHMLLMSRARSAGREKAMRKFENLLTVETGD 237
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BLAST of mRNA_H-canaliculatus_F_contig10022.58.1 vs. uniprot
Match: D7G286_ECTSI (Centrin-1, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G286_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 5.370e-37
Identity = 77/95 (81.05%), Postives = 83/95 (87.37%), Query Frame = 2 
Query:   98 SDGEFSVDMDMLDDITSDEGFELGEMEILLAAAKGRQTLPAKAFSLARLLFRRALPVSFADTRDARMLLMSRARGAGRDRAMHNFENLLTVCTDD 382
            SDG+FSVDMDM+DD+T+DEGFELGEMEILLAA K RQTL AKA SL RLL RRALP+S  DTRDARMLLMSRAR AGRD+AMH FENLLTV T D
Sbjct: 2822 SDGQFSVDMDMVDDVTNDEGFELGEMEILLAAVKARQTLAAKAASLGRLLARRALPISLTDTRDARMLLMSRARSAGRDKAMHQFENLLTVETGD 2916
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10022.58.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3X6_9PHAE1.750e-3777.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G286_ECTSI5.370e-3781.05Centrin-1, putative n=1 Tax=Ectocarpus siliculosus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10022contigH-canaliculatus_F_contig10022:3218..4947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size514
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10022.58.1prot_H-canaliculatus_F_contig10022.58.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10022 3339..4863 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928630.9049866-UTR-H-canaliculatus_F_contig10022:3217..33381622928630.9049866-UTR-H-canaliculatus_F_contig10022:3217..3338Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10022 3218..3338 +
1696845503.0207853-UTR-H-canaliculatus_F_contig10022:3217..33381696845503.0207853-UTR-H-canaliculatus_F_contig10022:3217..3338Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10022 3218..3338 +
1622928630.964344-UTR-H-canaliculatus_F_contig10022:4863..49471622928630.964344-UTR-H-canaliculatus_F_contig10022:4863..4947Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10022 4864..4947 +
1696845503.079541-UTR-H-canaliculatus_F_contig10022:4863..49471696845503.079541-UTR-H-canaliculatus_F_contig10022:4863..4947Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10022 4864..4947 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928630.920629-CDS-H-canaliculatus_F_contig10022:3338..33891622928630.920629-CDS-H-canaliculatus_F_contig10022:3338..3389Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10022 3339..3389 +
1696845503.0461245-CDS-H-canaliculatus_F_contig10022:3338..33891696845503.0461245-CDS-H-canaliculatus_F_contig10022:3338..3389Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10022 3339..3389 +
1622928630.9359531-CDS-H-canaliculatus_F_contig10022:4038..41511622928630.9359531-CDS-H-canaliculatus_F_contig10022:4038..4151Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10022 4039..4151 +
1696845503.0567322-CDS-H-canaliculatus_F_contig10022:4038..41511696845503.0567322-CDS-H-canaliculatus_F_contig10022:4038..4151Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10022 4039..4151 +
1622928630.951836-CDS-H-canaliculatus_F_contig10022:4718..48631622928630.951836-CDS-H-canaliculatus_F_contig10022:4718..4863Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10022 4719..4863 +
1696845503.0668473-CDS-H-canaliculatus_F_contig10022:4718..48631696845503.0668473-CDS-H-canaliculatus_F_contig10022:4718..4863Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10022 4719..4863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10022.58.1

>prot_H-canaliculatus_F_contig10022.58.1 ID=prot_H-canaliculatus_F_contig10022.58.1|Name=mRNA_H-canaliculatus_F_contig10022.58.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=103bp
MDMLDDITSDEGFELGEMEILLAAAKGRQTLPAKAFSLARLLFRRALPVS
FADTRDARMLLMSRARGAGRDRAMHNFENLLTVCTDDRNDTTVPLKAQAV
VE*
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mRNA from alignment at H-canaliculatus_F_contig10022:3218..4947+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10022.58.1 ID=mRNA_H-canaliculatus_F_contig10022.58.1|Name=mRNA_H-canaliculatus_F_contig10022.58.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1730bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10022:3218..4947+ (Hapterophycus canaliculatus Oshoro5f female)
GCAGAGGGATAGGTTCCTCGGAAGTGGAAGCGATAGCGATGAGTGCGACG
ACGATGACGACGACGAAGTAGAACACGGAAACGATAGCGACGGGACTTCG
GACGGCGAGTTCTCGGTGGACATGGACATGTTGGACGACATAACAAGCGA
TGAGGGTTTCGAGCTGGGCGAGGTGCGTTCCGGGTCTGAAAAGATTGACC
ACACGGGGGAAAGGGTGCTTCCAGGGTGTTGTGCGGATGTGCAGCCTTTA
GCTATAGGGAAGAAGTCCAAGTCGAGACGACCTGGACAATTTTGTCACAA
GTTTTTGATTGACATCATGTTTGCGAGAGTGCGTGCTTTGGGAATCAGCC
GGAGCTGGAGCGCCGGGGAGATCGAGAATCTCCATTTACCCGCCTCTGTC
ACCCCTGAGTTAAGCGACGGTTGCTTGTTGACACATGCGAAAAGAAACTG
ACATGACTGGTTATTAGCCTGCCGCGCGAGGTTAGCCGTTCAGGCCGTTT
CCCAATGCTGCTCTCGGGTGATGCAGAGACCAAAGGACAAAACGCGCTTT
GTCCCACATGACTTTGTCGATAAAAGAAGAGTCCCAGAAAGAACGCTCCC
TGCAGTATGGTTGTTGGAGGGTTTGCTGGCCCTCTCTCTGAGGACTGAAG
CTGCCCGACCACGATTAAAATATGGGAGCAACGGCATCTTCCGTCCCGTC
GTGTTGGAGATGCATTGACTCAGCTTAACACTGAGTTCTTCAACTTTTTG
GTTGGGCTGCACGATTCACATCTCGATGGTTGCACCACCCGGTCGAAACT
TTGCCGACGTGAATGTATCAGATGGAGATACTCTTGGCGGCGGCGAAGGG
TCGGCAAACCCTCCCAGCGAAAGCCTTCAGTTTGGCGCGATTGTTGTTTC
GCAGAGCCCTGCCGGTTTCTTTCGCGGACACGAGGTAATGGCTGCCTTCA
TTCGCTAGAACCCGCAACGCCTATCTCGTTTGGGGGCAATGTATCGAGGG
CAGATGTCGTTTCTGTTGATACATGTGTGGCAAGACGAACCACAGCGTGA
GGGCAGGGTTAGCCCCTTGAAACCAACCTAAAAATTTGGTGAAGAAAGAA
ATGGGCTTGGGCAGGTAACTCAACCATGCCCCGATACTCCCCGCCACCCT
TCCACGGAAGAAGGTTTTGCTCCGCTGCTTGTCCCTCGACAAACTCGACC
CTTCTTTCGCCCTTTTGAGCGACATTCACAATGAATGGGGTCCAATCCTG
GCCATTCTCTACAGCAACCTTTGCTGCTCTTCGAAACGTCACGAAGCACG
AGTACGATATTCTTCCGTGAGACGAAGCAGCACGAAGGGTTCTGCAGTTA
TCTACCGCGCGGCTTCTACAAGAATGATAGCAGTGAGAAGTCGAGTTCCC
GCCTGCCGCTTCGTCATCATAAATTTATGTAATGCCTCTCCGTCTCCTCC
TCCTCCGCCGTCGTTGACCCTCGGCCTTTGTTCCCCCAACGCGTTCCGCA
GAGACGCACGCATGCTTCTCATGAGTCGAGCGCGCGGCGCAGGAAGGGAC
AGAGCCATGCACAACTTCGAGAACTTGCTGACCGTCTGCACAGACGACCG
CAACGACACTACAGTACCGCTGAAGGCACAAGCCGTGGTAGAGTAGGCCC
TAAACGAGTACTATTTGTGAAAGGAATGCGCTCTTTTCCCGTTGCCGGGA
GAGCGGATGGTGCTCGGTCGGATGGCAGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10022:3218..4947+

>mRNA_H-canaliculatus_F_contig10022.58.1 ID=mRNA_H-canaliculatus_F_contig10022.58.1|Name=mRNA_H-canaliculatus_F_contig10022.58.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=618bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10022:3218..4947+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGACATGTTGGACGACATAACAAGCGATGAGGGTTTCGAGCTGGGCGA
GATGGACATGTTGGACGACATAACAAGCGATGAGGGTTTCGAGCTGGGCG
AGATGGAGATACTCTTGGCGGCGGCGAAGGGTCGGCAAACCCTCCCAGCG
AAAGCCTTCAGTTTGGCGCGATTGTTGTTTCGCAGAGCCCTGCCGGTTTC
TTTCGCGGACACGAGATGGAGATACTCTTGGCGGCGGCGAAGGGTCGGCA
AACCCTCCCAGCGAAAGCCTTCAGTTTGGCGCGATTGTTGTTTCGCAGAG
CCCTGCCGGTTTCTTTCGCGGACACGAGAGACGCACGCATGCTTCTCATG
AGTCGAGCGCGCGGCGCAGGAAGGGACAGAGCCATGCACAACTTCGAGAA
CTTGCTGACCGTCTGCACAGACGACCGCAACGACACTACAGTACCGCTGA
AGGCACAAGCCGTGGTAGAGTAGAGACGCACGCATGCTTCTCATGAGTCG
AGCGCGCGGCGCAGGAAGGGACAGAGCCATGCACAACTTCGAGAACTTGC
TGACCGTCTGCACAGACGACCGCAACGACACTACAGTACCGCTGAAGGCA
CAAGCCGTGGTAGAGTAG
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