mRNA_H-canaliculatus_F_contig10598.576.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10598.576.1
Unique NamemRNA_H-canaliculatus_F_contig10598.576.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10598.576.1 vs. uniprot
Match: A0A6H5L0W0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L0W0_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 1.310e-58
Identity = 111/208 (53.37%), Postives = 145/208 (69.71%), Query Frame = 1 
Query:    1 VLELPTDTPTALDQVQAAYDVLDSSIDECENGYLLSIVFDWFDLNTLTEGVQSEIGSFNEDSLSELASDVHGVSDAVNDTEGVGKGVVWPTLVLALLFTAIFVAIGVATYECVGFGHTTCDAAACFISLSTVLVAVVNRLCAASAVALGVFYNAHAPALTGDFCINSDGNANSLIGDNSDGDDQLTQLITYYATDRSTENQAVDATIS 624
            +L L  DT  ALDQV A+Y+ L  S+D C+NG +LS + D FD+N+LT  VQ+EI   +ED+  ELA DV  +SDAV+DTEG  KG++WP L+L+L+FTA FVA+ V+TYECV FG+  C  A+C I+  T+ VAVV  +CAA AV+L         ALTGDFCI+ D NAN LI DN+DG  ++  LITYY  D ++EN AVDA I+
Sbjct:  153 ILNLANDTSVALDQVTASYEALQESVDGCDNGAILSSLLDAFDINSLTASVQAEIDDVSEDNFGELADDVQAISDAVSDTEGARKGLLWPVLILSLMFTAFFVAVSVSTYECVAFGYRDCAPASCCINPCTIFVAVVIWICAALAVSLS--------ALTGDFCIDPDANANELITDNTDG--EIADLITYYTGDCTSENAAVDAIIT 350
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10598.576.1 vs. uniprot
Match: D7FQM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM7_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 4.520e-18
Identity = 55/150 (36.67%), Postives = 86/150 (57.33%), Query Frame = 1 
Query:    1 VLELPTDTPTALDQVQAAYDVLDSSIDECENGYLLSIVFDWFDLNTLTEGVQSEIGSFNEDSLSELASDVHGVSDAVNDTEGVGKGVVWPTLVLALLFTAIFVAIGVATYECVGFGHTTCDAAACFISLS--TVLVAVVNRLCAASAVAL 444
            ++ LP DT   L  V  +YDVL++S+ +CEN  +   +    D  +L   VQ+ I   +  SL+++A  V  +SDA+  T+ + + +VWPT++LAL+F A+F+ I   TYE V     +C A  C    +   V +AVV  LCAAS ++L
Sbjct:  101 IIGLPADTAVGLGLVSDSYDVLEASVGDCENPDIAQAIVAGLDFGSLASEVQTAIDEIDRTSLADIAKQVQDISDAMYTTKVLRRTIVWPTIILALVFVALFILISCTTYEAVACARPSCRAP-CTGGFAPFVVFLAVVVYLCAASVISL 249
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10598.576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0W0_9PHAE1.310e-5853.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FQM7_ECTSI4.520e-1836.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10598contigH-canaliculatus_F_contig10598:2513..4163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size628
Cds size624
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10598.576.1prot_H-canaliculatus_F_contig10598.576.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10598 2513..4161 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928713.689006-CDS-H-canaliculatus_F_contig10598:2512..27191622928713.689006-CDS-H-canaliculatus_F_contig10598:2512..2719Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10598 2513..2719 +
1696845535.3327072-CDS-H-canaliculatus_F_contig10598:2512..27191696845535.3327072-CDS-H-canaliculatus_F_contig10598:2512..2719Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10598 2513..2719 +
1622928713.7022529-CDS-H-canaliculatus_F_contig10598:3455..36961622928713.7022529-CDS-H-canaliculatus_F_contig10598:3455..3696Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10598 3456..3696 +
1696845535.3412285-CDS-H-canaliculatus_F_contig10598:3455..36961696845535.3412285-CDS-H-canaliculatus_F_contig10598:3455..3696Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10598 3456..3696 +
1622928713.7129822-CDS-H-canaliculatus_F_contig10598:3985..41611622928713.7129822-CDS-H-canaliculatus_F_contig10598:3985..4161Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10598 3986..4161 +
1696845535.3525932-CDS-H-canaliculatus_F_contig10598:3985..41611696845535.3525932-CDS-H-canaliculatus_F_contig10598:3985..4161Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10598 3986..4161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10598.576.1

>prot_H-canaliculatus_F_contig10598.576.1 ID=prot_H-canaliculatus_F_contig10598.576.1|Name=mRNA_H-canaliculatus_F_contig10598.576.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=208bp
VLELPTDTPTALDQVQAAYDVLDSSIDECENGYLLSIVFDWFDLNTLTEG
VQSEIGSFNEDSLSELASDVHGVSDAVNDTEGVGKGVVWPTLVLALLFTA
IFVAIGVATYECVGFGHTTCDAAACFISLSTVLVAVVNRLCAASAVALGV
FYNAHAPALTGDFCINSDGNANSLIGDNSDGDDQLTQLITYYATDRSTEN
QAVDATIS
back to top

mRNA from alignment at H-canaliculatus_F_contig10598:2513..4163+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10598.576.1 ID=mRNA_H-canaliculatus_F_contig10598.576.1|Name=mRNA_H-canaliculatus_F_contig10598.576.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1651bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10598:2513..4163+ (Hapterophycus canaliculatus Oshoro5f female)
GTTTTGGAACTCCCGACCGACACCCCCACCGCCCTCGACCAAGTGCAAGC
GGCGTACGACGTCCTCGACAGTAGCATCGACGAATGCGAGAACGGGTACC
TGCTGTCGATCGTCTTCGACTGGTTCGACCTGAACACGCTCACGGAAGGG
GTGCAGTCGGAGATAGGCAGCTTCAATGAGGACAGCCTGAGCGAGCTCGC
CAGCGACGTGAGCAAGGGTTGCTTGTAAGGATGTTTTTTTTATGCCCTAT
TCTTCTTCTTCTTCTCCTTAGTGGATACTCCTTTGTTTTTGTTGTTGTTG
CCATCCGTTTTGTTCTTGGAGGTGGAAGACCTGAGCGGAAGCCACCTTGC
GCAGTCAGTCCGGTTTAGTTGTCTCAGGTCTCGCTTGTGTAGGGGCATTC
AGGTGCTGGTGCTCCAGTCGCGGGGGGAACCTGCAGAGGAGCGTGCGCGG
AGTTCGTTGAAGACGCGTTGTGGGGCGATCGCACCGGCTTTGACTGCGGC
CTTCTTTTTCGACCCCCAGCTCAAAAAAGGAGCATCAACCTCGCCCCCCC
CAACCCCTGTCTACTTGCTTGGCTGCTATTGCATTTTCGGCAACGCTCCA
GCCCCCCCCTCCCCCCCAGTTCCCGCAGGGTACGAGACGAAATGTTCCCC
CCGGATTCGATTCCCGAAAGAAACACTATGACCCCTGAACGGCAACGGGC
CCCGCAACGAGTGCACGCCTGCGCCCCCTCTCTCACGTCCCAAACTCTGG
TCCAAGGTCCCTCCTTTGCTCAGCCGCAACATTCCTGACCCGCGAACTGG
ACACAACACCGGGGCAGCCGTTCCAACTACCGACGAATGTTCCAAGCGAA
CGCACCGTGAAAGCACGCCTCTTGCACCCCTCCCCTCCCTCTCGCCACGA
ACGTGCTCTTCTCGCCCCCCGTCTCTTTTGCTGCTCGCCGCAGGTTCATG
GCGTGTCCGACGCCGTGAACGACACCGAGGGCGTCGGGAAGGGTGTGGTG
TGGCCGACGCTCGTCCTAGCGCTGCTGTTCACGGCCATCTTCGTCGCCAT
CGGCGTCGCGACCTACGAGTGCGTCGGGTTCGGGCACACCACTTGCGACG
CCGCTGCCTGCTTCATCTCCCTGTCCACCGTCCTTGTCGCCGTCGTGAAC
CGGCTCTGCGCCGCGTCCGCCGTTGCTTTGGGCGGTGAGAGGGGGAGGGT
ATGCGTGGTGGGGAGGGGAGGGAAAGGGCGGTACGCGGAGAGGGTGGTGC
GAAGTGGATGGCGGGACTGATCCTCGCCGTCGAAGCGGAAATGTGGGCTC
AACCCCTCCGGTCGGCGCGCGCTGTCGTCGCCATCGTCTTGGCGTACTAG
CGCAGGAGACCCCTAGCTTCGCTGCTGCTCTTGCTCTCCCCTTTCTTCCT
CCGCTATTCTCCTTTTATCTCACTTTGCCCGGCCTGCCCGGCCTGCCCCC
GCCCTCCGTCCCCGCTCCCGTCCTCTTCTATAACGCCCACGCACCAGCCC
TGACCGGTGACTTCTGCATCAACTCGGACGGCAATGCCAACTCACTGATA
GGAGACAACTCGGACGGCGACGATCAACTCACCCAGCTGATCACGTACTA
CGCTACCGATCGTTCCACCGAGAACCAGGCAGTGGACGCCACCATCAGTG
C
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10598:2513..4163+

>mRNA_H-canaliculatus_F_contig10598.576.1 ID=mRNA_H-canaliculatus_F_contig10598.576.1|Name=mRNA_H-canaliculatus_F_contig10598.576.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1248bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10598:2513..4163+ (Hapterophycus canaliculatus Oshoro5f female)
GTTTTGGAACTCCCGACCGACACCCCCACCGCCCTCGACCAAGTGCAAGC
GGCGTACGACGTCCTCGACAGTAGCATCGACGAATGCGAGAACGGGTACC
TGCTGTCGATCGTCTTCGACTGGTTCGACCTGAACACGCTCACGGAAGGG
GTGCAGTCGGAGATAGGCAGCTTCAATGAGGACAGCCTGAGCGAGCTCGC
CAGCGACGTTTTGGAACTCCCGACCGACACCCCCACCGCCCTCGACCAAG
TGCAAGCGGCGTACGACGTCCTCGACAGTAGCATCGACGAATGCGAGAAC
GGGTACCTGCTGTCGATCGTCTTCGACTGGTTCGACCTGAACACGCTCAC
GGAAGGGGTGCAGTCGGAGATAGGCAGCTTCAATGAGGACAGCCTGAGCG
AGCTCGCCAGCGACGTTCATGGCGTGTCCGACGCCGTGAACGACACCGAG
GGCGTCGGGAAGGGTGTGGTGTGGCCGACGCTCGTCCTAGCGCTGCTGTT
CACGGCCATCTTCGTCGCCATCGGCGTCGCGACCTACGAGTGCGTCGGGT
TCGGGCACACCACTTGCGACGCCGCTGCCTGCTTCATCTCCCTGTCCACC
GTCCTTGTCGCCGTCGTGAACCGGCTCTGCGCCGCGTCCGCCGTTGCTTT
GGGCGGTTCATGGCGTGTCCGACGCCGTGAACGACACCGAGGGCGTCGGG
AAGGGTGTGGTGTGGCCGACGCTCGTCCTAGCGCTGCTGTTCACGGCCAT
CTTCGTCGCCATCGGCGTCGCGACCTACGAGTGCGTCGGGTTCGGGCACA
CCACTTGCGACGCCGCTGCCTGCTTCATCTCCCTGTCCACCGTCCTTGTC
GCCGTCGTGAACCGGCTCTGCGCCGCGTCCGCCGTTGCTTTGGGCGTCTT
CTATAACGCCCACGCACCAGCCCTGACCGGTGACTTCTGCATCAACTCGG
ACGGCAATGCCAACTCACTGATAGGAGACAACTCGGACGGCGACGATCAA
CTCACCCAGCTGATCACGTACTACGCTACCGATCGTTCCACCGAGAACCA
GGCAGTGGACGCCACCATCAGTTCTTCTATAACGCCCACGCACCAGCCCT
GACCGGTGACTTCTGCATCAACTCGGACGGCAATGCCAACTCACTGATAG
GAGACAACTCGGACGGCGACGATCAACTCACCCAGCTGATCACGTACTAC
GCTACCGATCGTTCCACCGAGAACCAGGCAGTGGACGCCACCATCAGT
back to top