mRNA_H-canaliculatus_F_contig10593.574.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10593.574.1
Unique NamemRNA_H-canaliculatus_F_contig10593.574.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10593.574.1 vs. uniprot
Match: A0A6H5JI45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI45_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.640e-19
Identity = 64/111 (57.66%), Postives = 70/111 (63.06%), Query Frame = 1 
Query:   67 ISSWRNTWQGLMSSRSSRGRTRVQGAGASTSPTGAAQQNRQHQ--SATARWSGSRGTLTPSDQGTGSVSNSSTSTGRIAADVLSQPTTVSAESDFSLSEVFAGAVSPAGLA 393
            IS+WRNTWQGLMS  SSRGR+R Q  G ++SP+  +         SATARWS  R                   TGRI ADVLS PT VSAESDFSLSEVFAGAVSPAGLA
Sbjct: 1394 ISAWRNTWQGLMSVGSSRGRSRTQTGGTASSPSRQSXXXXXXXXXSATARWSSPRDAPATXXXXXXXXXXXXXXTGRIVADVLSHPTIVSAESDFSLSEVFAGAVSPAGLA 1504
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BLAST of mRNA_H-canaliculatus_F_contig10593.574.1 vs. uniprot
Match: D8LTM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTM1_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 4.230e-8
Identity = 36/55 (65.45%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:   67 ISSWRNTWQGLMSSRSSRGRTRVQGAGASTSPTGAAQ--QNRQHQSATARWSGSR 225
            IS+WRNTWQGLMS  SSRGR+R Q  G ++SP   +Q  Q+RQHQSATARWS  R
Sbjct: 1141 ISAWRNTWQGLMSVGSSRGRSRTQTGGTASSPLRQSQSSQHRQHQSATARWSSPR 1195
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10593.574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JI45_9PHAE1.640e-1957.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTM1_ECTSI4.230e-865.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10593contigH-canaliculatus_F_contig10593:85..1953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size439
Cds size438
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10593.574.1prot_H-canaliculatus_F_contig10593.574.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10593 86..1953 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928713.5486805-CDS-H-canaliculatus_F_contig10593:85..1301622928713.5486805-CDS-H-canaliculatus_F_contig10593:85..130Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10593 86..130 -
1696845535.2436438-CDS-H-canaliculatus_F_contig10593:85..1301696845535.2436438-CDS-H-canaliculatus_F_contig10593:85..130Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10593 86..130 -
1622928713.5617766-CDS-H-canaliculatus_F_contig10593:465..6151622928713.5617766-CDS-H-canaliculatus_F_contig10593:465..615Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10593 466..615 -
1696845535.2539356-CDS-H-canaliculatus_F_contig10593:465..6151696845535.2539356-CDS-H-canaliculatus_F_contig10593:465..615Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10593 466..615 -
1622928713.572003-CDS-H-canaliculatus_F_contig10593:1154..13031622928713.572003-CDS-H-canaliculatus_F_contig10593:1154..1303Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10593 1155..1303 -
1696845535.2639205-CDS-H-canaliculatus_F_contig10593:1154..13031696845535.2639205-CDS-H-canaliculatus_F_contig10593:1154..1303Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10593 1155..1303 -
1622928713.5813878-CDS-H-canaliculatus_F_contig10593:1859..19531622928713.5813878-CDS-H-canaliculatus_F_contig10593:1859..1953Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10593 1860..1953 -
1696845535.273349-CDS-H-canaliculatus_F_contig10593:1859..19531696845535.273349-CDS-H-canaliculatus_F_contig10593:1859..1953Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10593 1860..1953 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10593.574.1

>prot_H-canaliculatus_F_contig10593.574.1 ID=prot_H-canaliculatus_F_contig10593.574.1|Name=mRNA_H-canaliculatus_F_contig10593.574.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=146bp
GDLSPEAGHERQRSGGGGGGGGISSWRNTWQGLMSSRSSRGRTRVQGAGA
STSPTGAAQQNRQHQSATARWSGSRGTLTPSDQGTGSVSNSSTSTGRIAA
DVLSQPTTVSAESDFSLSEVFAGAVSPAGLAEKRQRRRCRWQRGSR
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mRNA from alignment at H-canaliculatus_F_contig10593:85..1953-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10593.574.1 ID=mRNA_H-canaliculatus_F_contig10593.574.1|Name=mRNA_H-canaliculatus_F_contig10593.574.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1869bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10593:85..1953- (Hapterophycus canaliculatus Oshoro5f female)
GGCGACCTCAGCCCGGAGGCCGGGCACGAGAGACAGCGGAGCGGCGGCGG
TGGTGGCGGAGGAGGGATTTCGTCCTGGAGGAACACGTGGCAAGGTGCGT
GTAAGCCCGCACGTGATAGGCTTCGATCGTCGCCTAGTCCCCCCTGTTCT
CCTTGTCTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGT
GACTGGCTGGCGTTGAGCGCGGGATCCGGTGTCGTGGGGATTGCAACGTG
TTCCGGAGCCTCTGCTTCCAGGCCTAAGTTTTCCGAATGAAGGTCACGTG
CAGTCAGTGCTGCAATGATCCTGCGAGCTGGATGGCGGCGCGCGCGTGTT
GGCCACCCTTTGTACAGCGCCTATGCCGTTCCAAGGGTGCAGAGCTTGAA
GAGCACGGGCGTATAAAGTGCTGGAGGACGCGTGACCACATGCACGGCTC
TTGGTTGCCAATACGGGGAGACCGTTACCTACGACCCTCAATCACGCTCT
CCGCTGAAGTTCCGGTCCTTGCTTCATCTATCTCCATCTCGTGAGGACCC
CCTAATCGTACACACGTACCCGAAGATTCCAACCAGTCACATCCCGCGAC
CCCCCCCACCCACGCCCCCACCGGCGGTGTGCATTTCTTGGCTCCCCCAG
GGCTGATGAGCAGCAGGTCGAGCCGCGGTAGGACTCGGGTTCAGGGCGCG
GGGGCATCCACCTCGCCCACCGGAGCGGCACAGCAGAATCGACAGCACCA
GTCAGCAACCGCGCGTTGGTCCGGCTCACGCGGAACCCTCACTCCGTCGG
TGGGTGCAGCGCTGCCGTCTCCTGTCTGTCTCCTGTCGTGTTGACGTGGA
TCAAGCCTGCCTCACTTCCCGTTTTGATTCGTTCCGCGGTTTTCGTCTCT
CTCCGATGGCCTCCTGTTCTGGTCCGCTTTAGAGCGCTGCGATCTATCTG
TCGCCCGATGCGTTGTCGGTCGCTTACCTGCTTTTCCGTGGCGCTGCTTC
GTTGTCGAAGCTTGCCGGGGTGCCGTGTGTGGCTTGTGTTCGTGTGGATG
GGTGGGTAAGTGGGTGCCGTGTGTGTGTGTTCTGTATCCGTCCGTCGTTG
TCTAGGATCCTCGCTCGCTGCCTGCTATGATAGCGATTTTTTCCCCTGTC
CCGTGGGTCCTGTCGGCGCGTACAGCACGTGGCAGACACATGCCGCACAT
TCCCGTCGCTCCGCTTGTGCTCGCCTCGATACCCCGATCGATCGAGCCCG
TTCGCCGTCTCCACTTCCCCACCGGCAAATGCAAATCCAACGCGTCCCTT
TTCTGAAAGCCCACCACCACCCACGCCTCACGCAACAGGACCAAGGGACC
GGCTCGGTGTCAAACAGCTCCACCAGTACCGGCCGCATCGCGGCGGACGT
GCTAAGCCAGCCGACCACCGTATCTGCCGAGTCCGACTTCAGCCTCTCCG
AGGTGTTCGCAGGTGCAGTCAGCCCCGCCGGCCTAGCCGCCGCCGCCGCC
GCCTCTTCCGCGGCGGACCTGTTCAGGTCCCACCAGGGCGCTCCTCCAGG
GAGTCGCACTGCTGCTGGAGGGGGCAATGTCGAGGCTGCCGCCGCGGCGC
AAGCGCTCACCCCTCGAGCGCGTACTGGAGGGGGAGGAGGGGGAGGAGGA
GGCGGGGAGTTCGGGGGCGGGGCCCCTCCGTCCCCGCTACCCCGTTCGCG
GGTGGTCGCGGCGGTGGCAGAGGCGGCCGCAGAAACCGCTGCTGAAGAAG
AGCAGGCTCTCATGGAGCAGGGCGATAGGAGGAAAGCTGACGAGACCGCG
GCGGCGGTGGCGGCGGCGGCGAGGAGAAGCGGCAGCGCCGCCGCTGCCGG
TGGCAGAGAGGTAGCCGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10593:85..1953-

>mRNA_H-canaliculatus_F_contig10593.574.1 ID=mRNA_H-canaliculatus_F_contig10593.574.1|Name=mRNA_H-canaliculatus_F_contig10593.574.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=876bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10593:85..1953- (Hapterophycus canaliculatus Oshoro5f female)
GGCGACCTCAGCCCGGAGGCCGGGCACGAGAGACAGCGGAGCGGCGGCGG
TGGTGGCGGAGGAGGGATTTCGTCCTGGAGGAACACGTGGCAAGGGCGAC
CTCAGCCCGGAGGCCGGGCACGAGAGACAGCGGAGCGGCGGCGGTGGTGG
CGGAGGAGGGATTTCGTCCTGGAGGAACACGTGGCAAGGGCTGATGAGCA
GCAGGTCGAGCCGCGGTAGGACTCGGGTTCAGGGCGCGGGGGCATCCACC
TCGCCCACCGGAGCGGCACAGCAGAATCGACAGCACCAGTCAGCAACCGC
GCGTTGGTCCGGCTCACGCGGAACCCTCACTCCGTCGGGCTGATGAGCAG
CAGGTCGAGCCGCGGTAGGACTCGGGTTCAGGGCGCGGGGGCATCCACCT
CGCCCACCGGAGCGGCACAGCAGAATCGACAGCACCAGTCAGCAACCGCG
CGTTGGTCCGGCTCACGCGGAACCCTCACTCCGTCGGACCAAGGGACCGG
CTCGGTGTCAAACAGCTCCACCAGTACCGGCCGCATCGCGGCGGACGTGC
TAAGCCAGCCGACCACCGTATCTGCCGAGTCCGACTTCAGCCTCTCCGAG
GTGTTCGCAGGTGCAGTCAGCCCCGCCGGCCTAGCCGACCAAGGGACCGG
CTCGGTGTCAAACAGCTCCACCAGTACCGGCCGCATCGCGGCGGACGTGC
TAAGCCAGCCGACCACCGTATCTGCCGAGTCCGACTTCAGCCTCTCCGAG
GTGTTCGCAGGTGCAGTCAGCCCCGCCGGCCTAGCCGAGAAGCGGCAGCG
CCGCCGCTGCCGGTGGCAGAGAGGTAGCCGGGAGAAGCGGCAGCGCCGCC
GCTGCCGGTGGCAGAGAGGTAGCCGG
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