mRNA_H-canaliculatus_F_contig10590.572.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10590.572.1
Unique NamemRNA_H-canaliculatus_F_contig10590.572.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10590.572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10590contigH-canaliculatus_F_contig10590:867..1608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size742
Cds size552
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10590.572.1prot_H-canaliculatus_F_contig10590.572.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10590 968..1519 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928713.4135303-UTR-H-canaliculatus_F_contig10590:866..9671622928713.4135303-UTR-H-canaliculatus_F_contig10590:866..967Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10590 867..967 +
1696845535.152958-UTR-H-canaliculatus_F_contig10590:866..9671696845535.152958-UTR-H-canaliculatus_F_contig10590:866..967Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10590 867..967 +
1622928713.4391239-UTR-H-canaliculatus_F_contig10590:1519..16081622928713.4391239-UTR-H-canaliculatus_F_contig10590:1519..1608Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10590 1520..1608 +
1696845535.2045126-UTR-H-canaliculatus_F_contig10590:1519..16081696845535.2045126-UTR-H-canaliculatus_F_contig10590:1519..1608Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10590 1520..1608 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928713.426525-CDS-H-canaliculatus_F_contig10590:967..15191622928713.426525-CDS-H-canaliculatus_F_contig10590:967..1519Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10590 968..1519 +
1696845535.1894684-CDS-H-canaliculatus_F_contig10590:967..15191696845535.1894684-CDS-H-canaliculatus_F_contig10590:967..1519Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10590 968..1519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10590.572.1

>prot_H-canaliculatus_F_contig10590.572.1 ID=prot_H-canaliculatus_F_contig10590.572.1|Name=mRNA_H-canaliculatus_F_contig10590.572.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=184bp
MDGHVYKKRSLHPSPQSRSSARNSPLTRSAPTARIVQSTSRLYNHLQRVT
CSTHEPDDALCTAPSSDERRLFFSGKSVSLTSPSRPLRSQEIWTKNEFVW
RWVGGVLVVKHRSLLFERSETGQLVMVWRRRATTCQWTVERIEEAAGEEE
VKREGPRTTTWRSSFRSLVRYGVLQSNIRGAHE*
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mRNA from alignment at H-canaliculatus_F_contig10590:867..1608+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10590.572.1 ID=mRNA_H-canaliculatus_F_contig10590.572.1|Name=mRNA_H-canaliculatus_F_contig10590.572.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=742bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10590:867..1608+ (Hapterophycus canaliculatus Oshoro5f female)
AGGAACAACTGGGATAAGCTTGTTGGTCTATCGGAGTCGAGGCACCTCCT
GTCACCCAATCACGTCCTCTCTCTCTCTGCGACAAGACGCGGTAACAAGT
AATGGATGGACATGTGTATAAAAAACGCAGCTTGCATCCAAGCCCCCAAA
GCAGGAGCAGCGCGCGGAACTCGCCTTTGACTCGCAGTGCACCTACGGCG
CGTATTGTCCAGAGTACCTCGAGGCTATATAACCACCTTCAACGCGTCAC
GTGTAGCACCCACGAGCCAGATGATGCCCTCTGTACCGCTCCATCGTCAG
ATGAGAGGAGGTTGTTTTTCTCAGGAAAAAGCGTGTCCTTGACAAGCCCA
TCTCGCCCACTACGGTCTCAGGAGATTTGGACTAAGAATGAATTTGTTTG
GCGTTGGGTGGGGGGGGTGTTGGTAGTCAAGCACCGTTCCCTCCTATTTG
AAAGGTCGGAGACAGGCCAACTTGTCATGGTCTGGAGACGTCGCGCGACC
ACATGTCAGTGGACAGTCGAGCGCATAGAAGAAGCAGCGGGGGAGGAGGA
GGTCAAGCGCGAAGGTCCTCGTACGACGACATGGCGTTCTTCGTTTCGCT
CTCTTGTAAGATACGGAGTACTACAAAGTAATATACGCGGTGCCCATGAG
TGAATGAACCCTTCGTCACGTGTGGTTTTTACCTCGTGGAAGGAGTTTTT
CCGGACGATCACGGAGGACTCCGTGAACCTGATAATTCCGTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10590:867..1608+

>mRNA_H-canaliculatus_F_contig10590.572.1 ID=mRNA_H-canaliculatus_F_contig10590.572.1|Name=mRNA_H-canaliculatus_F_contig10590.572.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1104bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10590:867..1608+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGATGGACATGTGTATAAAAAACGCAGCTTGCATCCAAGCCCCCAAAG
CAGGAGCAGCGCGCGGAACTCGCCTTTGACTCGCAGTGCACCTACGGCGC
GTATTGTCCAGAGTACCTCGAGGCTATATAACCACCTTCAACGCGTCACG
TGTAGCACCCACGAGCCAGATGATGCCCTCTGTACCGCTCCATCGTCAGA
TGAGAGGAGGTTGTTTTTCTCAGGAAAAAGCGTGTCCTTGACAAGCCCAT
CTCGCCCACTACGGTCTCAGGAGATTTGGACTAAGAATGAATTTGTTTGG
CGTTGGGTGGGGGGGGTGTTGGTAGTCAAGCACCGTTCCCTCCTATTTGA
AAGGTCGGAGACAGGCCAACTTGTCATGGTCTGGAGACGTCGCGCGACCA
CATGTCAGTGGACAGTCGAGCGCATAGAAGAAGCAGCGGGGGAGGAGGAG
GTCAAGCGCGAAGGTCCTCGTACGACGACATGGCGTTCTTCGTTTCGCTC
TCTTGTAAGATACGGAGTACTACAAAGTAATATACGCGGTGCCCATGAGT
GAATGGATGGACATGTGTATAAAAAACGCAGCTTGCATCCAAGCCCCCAA
AGCAGGAGCAGCGCGCGGAACTCGCCTTTGACTCGCAGTGCACCTACGGC
GCGTATTGTCCAGAGTACCTCGAGGCTATATAACCACCTTCAACGCGTCA
CGTGTAGCACCCACGAGCCAGATGATGCCCTCTGTACCGCTCCATCGTCA
GATGAGAGGAGGTTGTTTTTCTCAGGAAAAAGCGTGTCCTTGACAAGCCC
ATCTCGCCCACTACGGTCTCAGGAGATTTGGACTAAGAATGAATTTGTTT
GGCGTTGGGTGGGGGGGGTGTTGGTAGTCAAGCACCGTTCCCTCCTATTT
GAAAGGTCGGAGACAGGCCAACTTGTCATGGTCTGGAGACGTCGCGCGAC
CACATGTCAGTGGACAGTCGAGCGCATAGAAGAAGCAGCGGGGGAGGAGG
AGGTCAAGCGCGAAGGTCCTCGTACGACGACATGGCGTTCTTCGTTTCGC
TCTCTTGTAAGATACGGAGTACTACAAAGTAATATACGCGGTGCCCATGA
GTGA
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