|
|
Homology
BLAST of mRNA_H-canaliculatus_F_contig1059.569.1 vs. uniprot
Match: D7FV59_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV59_ECTSI) HSP 1 Score: 622 bits (1603), Expect = 1.900e-218 Identity = 352/490 (71.84%), Postives = 395/490 (80.61%), Query Frame = 1
Query: 145 MRALIAFLGARAEHLASMRHLLPPLLKIADGDKDEWVQVVSGLVRGKLLLSEEESSADIGENPTATQSDFVLRKTVREVLEQAKHNMSERSGSKEQRALDGSS--GSSEARHMREAPYFGPLEERYVSRRQQPRKQEFTNAHFSVKYDFVSEFSEDLASNVSGAQNSSLSPTGGAAA-GAVAFSSRAGQGGLVKA-GSLVPKPSPAAPNLAQARRVSLAAAVDPSAGSDGLRRISKPLALSRNFLGTQAGVGRVTSGVGGARGVRGXXXXXXXSSKTGLMMINVDELQAIHAEKQSARERAKGKPGRKKAKVGGSDEQNAPVTDPSSVAAATEEHAQLASSKLHIGDADGLQPEKPSSDEKVAETKLLAKSSAPTDVPMPIPQQGEIEAVAAMMVLGVAGGEEDSETSYLPEALTKLLENSNSLRSEGKAKLESFFQKKTPGGSPQERIKYHEEVSPGADGEMMRVTSYIRLDYETWVWDRVHKKKRVKS 1602
M+ALIAFLGAR EHLAS+ H+LP LL +AD DKDEWVQVVSGLVR KLL +E+ S +G+ +QSDFVLRKTVREVLE+AK NMSER+G+ +QR + GS+ G+ + R MREAPYFGPLEERYVSR+QQPRKQEF NAHFSVKYDFV EFSEDLASNV G N+S SPTGG A+ A A +SR GQGGL+K GS P P+PAAPNLAQARRVSLAA VDPSAGSDGLRR SKPLALSRN++G Q G GR +SGVGGARG RG K GLMMINVDELQAIHAEKQSARE+AKGKPGRKKAK+ G EQ+ +P + A+AT Q+ ++ +G+ DG PE S + K A+ K AK SA D PMP+PQQGEIEAVAAMMVLGVAGG ED+ETSYLPEALTKLLEN+NSLR EGKAKLESFFQKK P GS QER+KYHEEVSPGADGEMMRVTSYIRLDYETWVWDRVHKKKRVKS
Sbjct: 1 MKALIAFLGARKEHLASLNHVLPSLLGMADSDKDEWVQVVSGLVRQKLLPRDEDDSTSVGDEAKTSQSDFVLRKTVREVLERAKQNMSERAGNGKQRVVGGSTIGGNRDTRRMREAPYFGPLEERYVSRKQQPRKQEFANAHFSVKYDFVGEFSEDLASNVGGTSNTSSSPTGGGASVAAAALASRVGQGGLLKTPGSFAPAPTPAAPNLAQARRVSLAAVVDPSAGSDGLRRTSKPLALSRNYVGLQHGSGRTSSGVGGARGTRGGGGASP--GKAGLMMINVDELQAIHAEKQSAREKAKGKPGRKKAKLEGGGEQSTAGMEPGTGASATGTQ-QVVANATDVGNTDGQLPEGASGEGKKAKPKAPAKPSATADGPMPVPQQGEIEAVAAMMVLGVAGGGEDAETSYLPEALTKLLENANSLRPEGKAKLESFFQKKMPEGSQQERVKYHEEVSPGADGEMMRVTSYIRLDYETWVWDRVHKKKRVKS 487
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-12_007450.1 |
| Exons | 2 |
| Model size | 1605 |
| Cds size | 1605 |
| Stop | 1 |
| Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622928713.0398457-CDS-H-canaliculatus_F_contig1059:9291..10752 | 1622928713.0398457-CDS-H-canaliculatus_F_contig1059:9291..10752 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1059 9292..10752 - |
| 1696845534.9536924-CDS-H-canaliculatus_F_contig1059:9291..10752 | 1696845534.9536924-CDS-H-canaliculatus_F_contig1059:9291..10752 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1059 9292..10752 - |
| 1622928713.055406-CDS-H-canaliculatus_F_contig1059:13232..13376 | 1622928713.055406-CDS-H-canaliculatus_F_contig1059:13232..13376 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1059 13233..13376 - |
| 1696845534.9630215-CDS-H-canaliculatus_F_contig1059:13232..13376 | 1696845534.9630215-CDS-H-canaliculatus_F_contig1059:13232..13376 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1059 13233..13376 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1059.569.1 >prot_H-canaliculatus_F_contig1059.569.1 ID=prot_H-canaliculatus_F_contig1059.569.1|Name=mRNA_H-canaliculatus_F_contig1059.569.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=535bp
MPTPKHIRAFELRLRANWSSEDVVTMLTPDFVETVLLHGFAALEPTIKMR ALIAFLGARAEHLASMRHLLPPLLKIADGDKDEWVQVVSGLVRGKLLLSE EESSADIGENPTATQSDFVLRKTVREVLEQAKHNMSERSGSKEQRALDGS SGSSEARHMREAPYFGPLEERYVSRRQQPRKQEFTNAHFSVKYDFVSEFS EDLASNVSGAQNSSLSPTGGAAAGAVAFSSRAGQGGLVKAGSLVPKPSPA APNLAQARRVSLAAAVDPSAGSDGLRRISKPLALSRNFLGTQAGVGRVTS GVGGARGVRGGGGGGGGSSKTGLMMINVDELQAIHAEKQSARERAKGKPG RKKAKVGGSDEQNAPVTDPSSVAAATEEHAQLASSKLHIGDADGLQPEKP SSDEKVAETKLLAKSSAPTDVPMPIPQQGEIEAVAAMMVLGVAGGEEDSE TSYLPEALTKLLENSNSLRSEGKAKLESFFQKKTPGGSPQERIKYHEEVS PGADGEMMRVTSYIRLDYETWVWDRVHKKKRVKS* back to topmRNA from alignment at H-canaliculatus_F_contig1059:9292..13376- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig1059.569.1 ID=mRNA_H-canaliculatus_F_contig1059.569.1|Name=mRNA_H-canaliculatus_F_contig1059.569.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4085bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1059:9292..13376- (Hapterophycus canaliculatus Oshoro5f female) ATGCCAACCCCGAAGCATATTCGTGCGTTTGAGCTGAGGCTCAGGGCCAA
CTGGAGCAGTGAAGATGTCGTGACAATGCTGACGCCGGACTTCGTGGAAA
CAGTGTTGCTGCACGGTTTCGCCGCTCTTGAACCCACCATCAAGGTACGA
AAACATCTCCGGCGGTAGCGGTTTTCGAAGGCAGCTGCTGTCTTATACCC
AGCACGTTGCTTTTGCCTCTGCTTTGCAATTGTTTGATGCTGTGCGGCAC
CCCAAGCGGCGGTTCGACTCGTCTAGCTTGATTGGATTCCCTCGCTCATT
CCTTGCGCAGTCTTTCTCTGAACCCCATATCATCTGTTCTTGGAGTGCAA
TATGAAATTGTCCTGTTGGCTGAACCTATGATATCATGTAGAATTACTGC
ATTTTTACATTTTTACCCCGTCCACCCCGGCGGGGGTGCCTAACACCACC
GTTACAATACAAACTTTCATCTTCGATTGACCGCTGCAGTAGTCCGTGAC
AAATGGAAGTGGAACAGAGATACGCTGTATGTAGTGAAACCTTGGTTCGG
GCGTACCCAAACCCTCAATCGTGTGGAGGTGCGGAGGTGCTTCAGGTGGC
GCGATCTGCGCGACTGTCGTTCGCCAGAAGTATGTCCGAAGTCAACCGCA
TGCACGGTCTCGACAATCGCGATACATTTGTTGTTGATGTTCTCCCTCTA
GAATCACAGGCCTTGAGCGGAGGACAAGCTCTTACGGCGGCATCGGGATG
GTCTGAAATGTAAATCTGCACAGAAAGCAGGATGTCTTCGTAAAACCATC
CGCGACAGAATCTTGTTCGCAGCAGTCATTGTATCAAATGATCAGACTAA
CTAGAGGAGTCGGGGCAGAGCTACCCCGGGGTAGGGAAATTCAAGGCAGG
ACAGCACTTAATGAAGCCTTCAGAAGGCTAGGTAGGGGGTGTGATACACG
TTGACGAGAAGGTGAGAAATATCACATGAGTTGTAGACATGATGACCAAA
ATATCGCCTAAACGAAATGAGGAGTGAAATCGTACGGAGGTGGCAAGTAT
AGTCTTCGGTTAGCGTATAGAGCTTCGTATTACACTTGTACAAAGGTCAC
GAGACCGTTGTGTTGCTAGCGAACCTGGATATCCCCGGGCAAACTTTGTA
AGTGCTTCATCGAACCCACCGTTACAACATTTTCGTGGTCTTTAAAGAAA
AGTAAGAAAAATCGCCCAGGTATTCTTCCTTTCCTGATTTGCCAATACCA
CCGCAGGGTTAACAACTGCTGCTGCTGTTGCATTCCCTAGTTGTTTCGAT
CGCCACGTCTCAAGCCTACGAACGTTTGTACGGAATTCGAAGGTGCTTGC
TGTCACTTCTAAATGTATTTTGAACTAGATTCCTATCCGAAATTTTGAAG
CGGCCGAAGTTCTCTAGCAGAAGTATTTGTCCAGAGGGCCGACGTTTCAC
AATGGAAATCATCCACACGAACTTCTCGAAATGTCCATGCACCTCTAAAT
TAACCAGTGTCCTACACCGAAATCAGAACTAACAGCGCAGGTATCCCTAA
GTCCAGGGGAACGTGGGTCTTCATTCGCTGGCCACATTACGTGTCATCAT
GTCATACAGGCTCTGTATTCCAGTACGTCGTCTGTTTTTCTTGATTCCAG
TACGTCGTCTGTTTCTGCTGGGCAAGGACGCGTGGAGCAAATTCCTTTGA
CGCACAACATGCCGTAGTACTGAAATTGTGGTTACAAGTATGAGTCGAAA
ATATGCGAACAATTGCGTTCCGAATTGGGATTTGCCTTAACACCAGTACA
GTCGAGTGTCGTTATCTCCGGGATGTTCCTACTCTTTGTGATCGCTGCAG
GATCTCCTTATGCCCTGTCTTCAGTGCCACACTATCGGTGACCCTCAATA
TTCCTACACAGAGAAAATTATACAGCCGCAACGCACCGCCGACCTTAGGG
GCCTAAAAGCAATCGTCCGGATACCTTTTCATCTACACGAAAAGGAACGC
CGTATGCTCCTCAAAACTGGATTTCTGATAGACTGAGAGGGCTTGGTTTA
GACATCGACTCTTGACATGTACCTTTCTACGCTGCTGATGATTTCTACCT
TGAAGACAAGAAGTGGCCTTCGCACTTGTCTTCCGTTGAGCGCCGTCGGA
GTCGAGGGTCAGCGCTGGCGTAGCACCAAGAGTCAATTTAGCAAGGCGGC
ATCAGTTTACTATTGATAGCACTTGAAGATCGGACAAGATTTTGTCTTTG
TTTATTCATTTTAATTTTCTGTTTTTGGGAAATGTATATGATGCTGTTCG
GACCCCCCTTTCTGCCTCTCATGCCAGCGTCAGCACAAAATATTTGTGTT
TTAAAATCCTGAATGTAAAGTTTACATTTCTCCGCTGTTGCTGAACTTGT
GATTGAAGCCTGTTGTTGTTGTACAGATTCTGTCAGCTTCAATGTCCAAA
CGAAAGCACTCGCTTGGTTCCTCATCGTCAGGTCAAAAATGTTGTCTTAA
GCTTGTCGAGAATCCTTAATTCTAAGGGCATCGATTGTGACCCCAACCCC
TTCACCGCGCATGCATTTTGAACTGCCGTTTTCGATCCTGTTCGCGGTCT
ACCACTGGCCGCGTGGCACTGCAGATGAGGGCCCTCATCGCCTTCCTGGG
TGCTCGAGCGGAGCATCTTGCGTCCATGAGACATCTCCTACCTCCGCTTT
TAAAAATTGCGGATGGCGACAAAGACGAATGGGTCCAGGTTGTATCCGGT
CTTGTGCGTGGAAAGCTCCTACTGAGCGAGGAAGAAAGTTCGGCCGACAT
CGGCGAAAACCCAACGGCGACGCAAAGTGACTTCGTCTTACGAAAAACTG
TCAGGGAGGTTCTCGAACAAGCGAAGCACAATATGTCGGAACGGTCAGGC
AGTAAGGAGCAACGAGCCTTGGACGGTAGCAGTGGAAGTAGCGAAGCTCG
ACATATGCGGGAGGCACCGTATTTCGGCCCGTTAGAAGAGAGATACGTCA
GCCGTAGACAGCAGCCTCGAAAGCAGGAGTTCACCAATGCGCACTTCAGT
GTCAAGTACGATTTCGTCAGCGAATTCTCGGAAGACCTCGCCTCTAACGT
CAGCGGCGCCCAGAACTCTTCTTTGTCTCCAACAGGGGGGGCTGCAGCTG
GTGCCGTAGCCTTCTCGTCAAGAGCGGGTCAGGGTGGGTTGGTAAAGGCG
GGCTCATTGGTACCCAAACCTTCACCCGCAGCACCGAACCTTGCTCAAGC
TCGGAGGGTCTCGCTTGCTGCGGCGGTGGATCCATCCGCGGGTTCAGATG
GTCTCCGTCGGATCAGCAAGCCCTTGGCATTATCGCGAAATTTCCTTGGG
ACTCAGGCTGGTGTAGGGCGGGTGACTTCGGGTGTTGGCGGCGCGCGTGG
CGTGCGGGGAGGGGGCGGAGGCGGCGGCGGTAGTAGCAAAACGGGATTGA
TGATGATCAATGTAGACGAGCTGCAGGCAATACACGCCGAAAAACAATCT
GCAAGGGAGAGAGCAAAAGGAAAACCGGGTAGGAAGAAGGCAAAGGTTGG
AGGGAGTGACGAGCAAAATGCGCCAGTTACGGATCCTTCGTCTGTTGCGG
CAGCTACCGAGGAGCACGCACAGCTCGCTTCCTCCAAACTCCACATCGGC
GACGCGGATGGGCTGCAACCGGAGAAGCCAAGTAGCGACGAGAAGGTGGC
TGAGACGAAGCTACTAGCGAAATCTTCGGCACCGACGGACGTACCGATGC
CCATTCCGCAGCAGGGCGAAATCGAGGCGGTCGCGGCAATGATGGTCCTT
GGTGTAGCCGGGGGGGAAGAGGACTCGGAGACTTCGTACCTGCCCGAAGC
GCTGACGAAGCTGCTGGAAAATTCCAACTCGCTCCGATCGGAGGGGAAGG
CTAAGCTGGAAAGCTTCTTCCAAAAGAAAACACCCGGAGGGTCACCGCAA
GAGAGAATCAAGTACCACGAGGAAGTTAGCCCCGGTGCGGACGGGGAAAT
GATGCGGGTGACGAGCTACATTCGCTTGGACTACGAAACATGGGTCTGGG
ATAGGGTTCACAAGAAGAAGCGTGTGAAATCGTGA back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig1059:9292..13376- >mRNA_H-canaliculatus_F_contig1059.569.1 ID=mRNA_H-canaliculatus_F_contig1059.569.1|Name=mRNA_H-canaliculatus_F_contig1059.569.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3210bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1059:9292..13376- (Hapterophycus canaliculatus Oshoro5f female) ATGCCAACCCCGAAGCATATTCGTGCGTTTGAGCTGAGGCTCAGGGCCAA CTGGAGCAGTGAAGATGTCGTGACAATGCTGACGCCGGACTTCGTGGAAA CAGTGTTGCTGCACGGTTTCGCCGCTCTTGAACCCACCATCAAGATGCCA ACCCCGAAGCATATTCGTGCGTTTGAGCTGAGGCTCAGGGCCAACTGGAG CAGTGAAGATGTCGTGACAATGCTGACGCCGGACTTCGTGGAAACAGTGT TGCTGCACGGTTTCGCCGCTCTTGAACCCACCATCAAGATGAGGGCCCTC ATCGCCTTCCTGGGTGCTCGAGCGGAGCATCTTGCGTCCATGAGACATCT CCTACCTCCGCTTTTAAAAATTGCGGATGGCGACAAAGACGAATGGGTCC AGGTTGTATCCGGTCTTGTGCGTGGAAAGCTCCTACTGAGCGAGGAAGAA AGTTCGGCCGACATCGGCGAAAACCCAACGGCGACGCAAAGTGACTTCGT CTTACGAAAAACTGTCAGGGAGGTTCTCGAACAAGCGAAGCACAATATGT CGGAACGGTCAGGCAGTAAGGAGCAACGAGCCTTGGACGGTAGCAGTGGA AGTAGCGAAGCTCGACATATGCGGGAGGCACCGTATTTCGGCCCGTTAGA AGAGAGATACGTCAGCCGTAGACAGCAGCCTCGAAAGCAGGAGTTCACCA ATGCGCACTTCAGTGTCAAGTACGATTTCGTCAGCGAATTCTCGGAAGAC CTCGCCTCTAACGTCAGCGGCGCCCAGAACTCTTCTTTGTCTCCAACAGG GGGGGCTGCAGCTGGTGCCGTAGCCTTCTCGTCAAGAGCGGGTCAGGGTG GGTTGGTAAAGGCGGGCTCATTGGTACCCAAACCTTCACCCGCAGCACCG AACCTTGCTCAAGCTCGGAGGGTCTCGCTTGCTGCGGCGGTGGATCCATC CGCGGGTTCAGATGGTCTCCGTCGGATCAGCAAGCCCTTGGCATTATCGC GAAATTTCCTTGGGACTCAGGCTGGTGTAGGGCGGGTGACTTCGGGTGTT GGCGGCGCGCGTGGCGTGCGGGGAGGGGGCGGAGGCGGCGGCGGTAGTAG CAAAACGGGATTGATGATGATCAATGTAGACGAGCTGCAGGCAATACACG CCGAAAAACAATCTGCAAGGGAGAGAGCAAAAGGAAAACCGGGTAGGAAG AAGGCAAAGGTTGGAGGGAGTGACGAGCAAAATGCGCCAGTTACGGATCC TTCGTCTGTTGCGGCAGCTACCGAGGAGCACGCACAGCTCGCTTCCTCCA AACTCCACATCGGCGACGCGGATGGGCTGCAACCGGAGAAGCCAAGTAGC GACGAGAAGGTGGCTGAGACGAAGCTACTAGCGAAATCTTCGGCACCGAC GGACGTACCGATGCCCATTCCGCAGCAGGGCGAAATCGAGGCGGTCGCGG CAATGATGGTCCTTGGTGTAGCCGGGGGGGAAGAGGACTCGGAGACTTCG TACCTGCCCGAAGCGCTGACGAAGCTGCTGGAAAATTCCAACTCGCTCCG ATCGGAGGGGAAGGCTAAGCTGGAAAGCTTCTTCCAAAAGAAAACACCCG GAGGGTCACCGCAAGAGAGAATCAAGTACCACGAGGAAGTTAGCCCCGGT GCGGACGGGGAAATGATGCGGGTGACGAGCTACATTCGCTTGGACTACGA AACATGGGTCTGGGATAGGGTTCACAAGAAGAAGCGTGTGAAATCGTGAA TGAGGGCCCTCATCGCCTTCCTGGGTGCTCGAGCGGAGCATCTTGCGTCC ATGAGACATCTCCTACCTCCGCTTTTAAAAATTGCGGATGGCGACAAAGA CGAATGGGTCCAGGTTGTATCCGGTCTTGTGCGTGGAAAGCTCCTACTGA GCGAGGAAGAAAGTTCGGCCGACATCGGCGAAAACCCAACGGCGACGCAA AGTGACTTCGTCTTACGAAAAACTGTCAGGGAGGTTCTCGAACAAGCGAA GCACAATATGTCGGAACGGTCAGGCAGTAAGGAGCAACGAGCCTTGGACG GTAGCAGTGGAAGTAGCGAAGCTCGACATATGCGGGAGGCACCGTATTTC GGCCCGTTAGAAGAGAGATACGTCAGCCGTAGACAGCAGCCTCGAAAGCA GGAGTTCACCAATGCGCACTTCAGTGTCAAGTACGATTTCGTCAGCGAAT TCTCGGAAGACCTCGCCTCTAACGTCAGCGGCGCCCAGAACTCTTCTTTG TCTCCAACAGGGGGGGCTGCAGCTGGTGCCGTAGCCTTCTCGTCAAGAGC GGGTCAGGGTGGGTTGGTAAAGGCGGGCTCATTGGTACCCAAACCTTCAC CCGCAGCACCGAACCTTGCTCAAGCTCGGAGGGTCTCGCTTGCTGCGGCG GTGGATCCATCCGCGGGTTCAGATGGTCTCCGTCGGATCAGCAAGCCCTT GGCATTATCGCGAAATTTCCTTGGGACTCAGGCTGGTGTAGGGCGGGTGA CTTCGGGTGTTGGCGGCGCGCGTGGCGTGCGGGGAGGGGGCGGAGGCGGC GGCGGTAGTAGCAAAACGGGATTGATGATGATCAATGTAGACGAGCTGCA GGCAATACACGCCGAAAAACAATCTGCAAGGGAGAGAGCAAAAGGAAAAC CGGGTAGGAAGAAGGCAAAGGTTGGAGGGAGTGACGAGCAAAATGCGCCA GTTACGGATCCTTCGTCTGTTGCGGCAGCTACCGAGGAGCACGCACAGCT CGCTTCCTCCAAACTCCACATCGGCGACGCGGATGGGCTGCAACCGGAGA AGCCAAGTAGCGACGAGAAGGTGGCTGAGACGAAGCTACTAGCGAAATCT TCGGCACCGACGGACGTACCGATGCCCATTCCGCAGCAGGGCGAAATCGA GGCGGTCGCGGCAATGATGGTCCTTGGTGTAGCCGGGGGGGAAGAGGACT CGGAGACTTCGTACCTGCCCGAAGCGCTGACGAAGCTGCTGGAAAATTCC AACTCGCTCCGATCGGAGGGGAAGGCTAAGCTGGAAAGCTTCTTCCAAAA GAAAACACCCGGAGGGTCACCGCAAGAGAGAATCAAGTACCACGAGGAAG TTAGCCCCGGTGCGGACGGGGAAATGATGCGGGTGACGAGCTACATTCGC TTGGACTACGAAACATGGGTCTGGGATAGGGTTCACAAGAAGAAGCGTGT GAAATCGTGA back to top
|