mRNA_H-canaliculatus_F_contig10578.561.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10578.561.1
Unique NamemRNA_H-canaliculatus_F_contig10578.561.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10578.561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10578contigH-canaliculatus_F_contig10578:2541..3380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size301
Cds size177
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10578.561.1prot_H-canaliculatus_F_contig10578.561.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10578 2645..3360 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928712.1612954-UTR-H-canaliculatus_F_contig10578:2540..26441622928712.1612954-UTR-H-canaliculatus_F_contig10578:2540..2644Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10578 2541..2644 -
1696845534.428297-UTR-H-canaliculatus_F_contig10578:2540..26441696845534.428297-UTR-H-canaliculatus_F_contig10578:2540..2644Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10578 2541..2644 -
1622928712.2173305-UTR-H-canaliculatus_F_contig10578:3360..33801622928712.2173305-UTR-H-canaliculatus_F_contig10578:3360..3380Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10578 3361..3380 -
1696845534.4590793-UTR-H-canaliculatus_F_contig10578:3360..33801696845534.4590793-UTR-H-canaliculatus_F_contig10578:3360..3380Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10578 3361..3380 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928712.1859198-CDS-H-canaliculatus_F_contig10578:2644..27501622928712.1859198-CDS-H-canaliculatus_F_contig10578:2644..2750Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10578 2645..2750 -
1696845534.4392593-CDS-H-canaliculatus_F_contig10578:2644..27501696845534.4392593-CDS-H-canaliculatus_F_contig10578:2644..2750Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10578 2645..2750 -
1622928712.2027366-CDS-H-canaliculatus_F_contig10578:3289..33601622928712.2027366-CDS-H-canaliculatus_F_contig10578:3289..3360Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10578 3290..3360 -
1696845534.4491243-CDS-H-canaliculatus_F_contig10578:3289..33601696845534.4491243-CDS-H-canaliculatus_F_contig10578:3289..3360Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10578 3290..3360 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10578.561.1

>prot_H-canaliculatus_F_contig10578.561.1 ID=prot_H-canaliculatus_F_contig10578.561.1|Name=mRNA_H-canaliculatus_F_contig10578.561.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=59bp
MSGRGLPAAKRASSAFPEVPGTRSASPPPEPSLRGQGVLSNLDEDKSGKT
PHLKKFES*
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mRNA from alignment at H-canaliculatus_F_contig10578:2541..3380-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10578.561.1 ID=mRNA_H-canaliculatus_F_contig10578.561.1|Name=mRNA_H-canaliculatus_F_contig10578.561.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=840bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10578:2541..3380- (Hapterophycus canaliculatus Oshoro5f female)
CTATTGGCAATGCGGCGGCGATGAGTGGCAGGGGTCTACCTGCTGCGAAG
AGGGCTTCGAGTGCGTTCCCGGAAGTTCCTGGTACTCGCAGGTGAGAAGC
CGCCGATCTAGACCCCCGTCCCCCATGCACCGCGCATTATTTTTGCTTCA
AGGTTTCTCTCTCTAGGTTGTGGACCTCGTTCGCACTTTCTGGTTTGTTT
TGATGGGTGGGAATCGACCTTGAAATATTTTTGGAACTGGAAGCACGTCG
ACGATCCCCTGCGATTGACTTTTTGCCCTGCATTTGACGGTTTCGCCCGA
GACAGGAAGGGCCTGCTCATTGAACAAAAAGAATGTCGTCGATAGCTGAA
GTCGTCGTGGTTGTCGTTCGTGCGCAGGGTCTACATCAGACAAAATATAG
TTGTACACTCCCACACGCACGTGGCGGGGGGCATGTCAGGCACAAGAGAT
GCAACGCTCCTGGGTGTATCTACTTCTTCGTACTTCCAGGTCCTGTCTCT
TTCGGTGCACAGTGTACTAAGAATTGTGTACCGTAGTGTGTATCAAAATA
TTTACTGGACGCCCTCCTCCCCCCCCCCCGCCGCCGCCGCCTTACCGCCC
AACCTTTCCTGCCGACCACCACGGCAACAGTGCAAGCCCTCCACCTGAGC
CATCCCTCCGTGGACAAGGGGTCCTTTCCAATCTTGACGAGGACAAGAGT
GGCAAGACACCCCACCTGAAGAAGTTCGAGTCATGAGTACAGATCAGATC
GCGGGCACGCGCGCACGGCTGTCTGCAGCATAGAGAGGGTGCTTGGCTTC
CCCCGCTTGCCTGACGCGGGACAGGGTCTTCATATTGGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10578:2541..3380-

>mRNA_H-canaliculatus_F_contig10578.561.1 ID=mRNA_H-canaliculatus_F_contig10578.561.1|Name=mRNA_H-canaliculatus_F_contig10578.561.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=354bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10578:2541..3380- (Hapterophycus canaliculatus Oshoro5f female)
ATGAGTGGCAGGGGTCTACCTGCTGCGAAGAGGGCTTCGAGTGCGTTCCC
GGAAGTTCCTGGTACTCGCAGATGAGTGGCAGGGGTCTACCTGCTGCGAA
GAGGGCTTCGAGTGCGTTCCCGGAAGTTCCTGGTACTCGCAGTGCAAGCC
CTCCACCTGAGCCATCCCTCCGTGGACAAGGGGTCCTTTCCAATCTTGAC
GAGGACAAGAGTGGCAAGACACCCCACCTGAAGAAGTTCGAGTCATGATG
CAAGCCCTCCACCTGAGCCATCCCTCCGTGGACAAGGGGTCCTTTCCAAT
CTTGACGAGGACAAGAGTGGCAAGACACCCCACCTGAAGAAGTTCGAGTC
ATGA
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