mRNA_H-canaliculatus_F_contig10570.556.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10570.556.1
Unique NamemRNA_H-canaliculatus_F_contig10570.556.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig10570.556.1 vs. uniprot
Match: D7FZG7_ECTSI (Exonuclease I Exo1 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG7_ECTSI)

HSP 1 Score: 384 bits (987), Expect = 3.450e-126
Identity = 209/360 (58.06%), Postives = 253/360 (70.28%), Query Frame = 1
Query:    1 GTLALSPLATRIAWGDLDARTGREWAPPLEDTAPISGRSGRNPAGSTQSSTLPGSTPFPEPGPNLQ-TRTPATHDTNNFASDGFNRLPAAGERYSDWTVPQLREFLSVFRCLDNAGTSGFNKAVLTKLSADIVSLIRKSGHLGQNLAFRHPVPDLRPFEEKEKALMPELPAERLRIKEWVAMRRYLPEVSKSVILGFLQEVNPLADHGTRVWYRAEQRVLDMGNLNRFWAVPSKDESMWLGTRRVAGASYSADKDYRVRVHLSVKELYDSPDPTAMEEQQEEEEVESEGGVGID--STKRLVALKVVSALCECPAGLGGGCSHVAMVLFLARLLQMSPDELATFNPSTCTGRACAWIMKH 1071
            GTL LSPLA+R+A GD+   TGREW PPL  TA   G++    AG  +    P +     P  + + +R     DTNN+   GF+RLP   E Y+ WTVP+LREFLSVFRCLD AGTSGF KA+L +++ D+V LIR  G L  NLAFRHPVPDL  FEEKE  LMP+LPA  LRIKEW AMRRYLPE+SK+VI  FL EVN LA  G+R+WYR+ QRVLDMGNL+RFWAVP+    MW+GT   AGAS+SADK+YRVR+ L V+ + ++  PT  E        E    VG D  S + LVAL+V++ALCECPAG+ GGCSH AM LFL RLLQMS ++LATFNP+TCTG AC WIM+H
Sbjct:  263 GTLELSPLASRVARGDVCPLTGREWDPPL-GTAQAKGQAVGEDAGRQKKRATPETASTRPPNASSRASRARGPQDTNNYREHGFSRLPGETEDYTKWTVPKLREFLSVFRCLDTAGTSGFKKALLAQMAGDVVRLIRSCGVLDTNLAFRHPVPDLSSFEEKEARLMPDLPATGLRIKEWSAMRRYLPEISKAVISRFLGEVNKLAGEGSRLWYRSLQRVLDMGNLSRFWAVPAAGGIMWIGTS--AGASFSADKEYRVRIKLRVEGVDENAPPTEQEXXXXXXXXEV---VGNDPRSAQTLVALEVIAALCECPAGIKGGCSHAAMALFLGRLLQMSEEQLATFNPTTCTGMACRWIMQH 616          
BLAST of mRNA_H-canaliculatus_F_contig10570.556.1 vs. uniprot
Match: D7G0K2_ECTSI (Exonuclease 1 n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G0K2_ECTSI)

HSP 1 Score: 375 bits (963), Expect = 1.890e-120
Identity = 206/360 (57.22%), Postives = 251/360 (69.72%), Query Frame = 1
Query:    1 GTLALSPLATRIAWGDLDARTGREWAPPLEDTAPISGRSGRNPAGSTQSSTLPGSTPFPEPGPNLQ-TRTPATHDTNNFASDGFNRLPAAGERYSDWTVPQLREFLSVFRCLDNAGTSGFNKAVLTKLSADIVSLIRKSGHLGQNLAFRHPVPDLRPFEEKEKALMPELPAERLRIKEWVAMRRYLPEVSKSVILGFLQEVNPLADHGTRVWYRAEQRVLDMGNLNRFWAVPSKDESMWLGTRRVAGASYSADKDYRVRVHLSVKELYDSPDPTAMEEQQEEEEVESEGGVGID--STKRLVALKVVSALCECPAGLGGGCSHVAMVLFLARLLQMSPDELATFNPSTCTGRACAWIMKH 1071
            GT  LSPLA+R+A  D    TGREW PPL  TA   G++    AG  +    P +     P  + + +R+    DTNN+   GF+RLPA  E Y+  TVP+LREFLSVFRCLDNAGTSGFNKA+L +++ D+V LIR  G L  NLAFRHPVPDL  FEEKE  LM +LPA  LRIKEW AMRRYLPE+SK+VIL F+ EV  LA  G+R+WYR+ QRVLDMGNL+RFWAVP+    MW+GT   AGAS+SADK+YR+R+ L V+E+ +S  PT                VG D  S + LVAL+V++ALCECPAG+ GGCSH AM LFL RLLQMS ++LATFNP+TCTG AC WIM+H
Sbjct:  331 GTSELSPLASRVARRDACPLTGREWDPPL-GTAQAKGQAVGEDAGRQKKRATPETASTRPPNASSRASRSRGPQDTNNYREHGFSRLPAETEDYTKLTVPKLREFLSVFRCLDNAGTSGFNKALLAQMAGDVVRLIRSCGVLDTNLAFRHPVPDLSSFEEKEARLMTDLPATGLRIKEWSAMRRYLPEISKAVILRFMGEVKKLAGEGSRLWYRSVQRVLDMGNLSRFWAVPAAGGIMWIGTS--AGASFSADKEYRIRIKLRVEEVDESAPPTXXXXXXX---XXXXXVVGNDPRSAQTLVALEVIAALCECPAGIKGGCSHAAMALFLGRLLQMSEEQLATFNPTTCTGMACRWIMQH 684          
BLAST of mRNA_H-canaliculatus_F_contig10570.556.1 vs. uniprot
Match: A0A6H5KFX7_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX7_9PHAE)

HSP 1 Score: 341 bits (875), Expect = 5.000e-107
Identity = 189/376 (50.27%), Postives = 246/376 (65.43%), Query Frame = 1
Query:    1 GTLALSPLATRIAWGDLDARTGREWAPPLEDTAPISGRSGRNPAGSTQSSTLPGSTP---------------FPEPGPNLQTRTPATHDTNNFASDGFNRLPAAGERYSDWTVPQLREFLSVFRCLDNAGTSGFNKAVLTKLSADIVSLIRKSGHLGQNLAFRHPVPDLRPFEEKEKALMPELPAERLRIKEWVAMRRYLPEVSKSVILGFLQEVNPLADHGTRVWYRAEQRVLDMGNLNRFWAVPSKDESMWLGTRRVAGASYSADKDYRVRVHLSVKELYDSPDPTAMEEQQEEEEVESEGGVGIDSTK----RLVALKVVSALCECPAGLGGGCSHVAMVLFLARLLQMSPDELATFNPSTCTGRACAWIMKH 1071
            GTL  S +A+ IA G++   TG+ WAPPL +T        R      +++  PGS P                     N ++R   THDTNN+   GF+RLP A E ++ WTV QLREFLSVFRCLD+AG S + K  L +L+  +V++I+K G L  N AFRHPVPDL  F++KE+ +MPELP  R RI  +  ++++LPE+SKSVIL FL +VNP++  G+RVWYR  Q+V+DMGNLNR W VP+K+  M+LG    AGAS+S  K Y VR+ L V+ L +S  P+A EE+          G G++S +     LVAL VV+ALCECPAG+ GGCSH AMVLFL RLLQM+ DELATFNPSTCTGRAC+WIM++
Sbjct:  371 GTLEFSSVASGIASGEVSPTTGQVWAPPLLET--------RIAQELRRATRRPGSQPPXXXXXXXXXXXXXXXXXXXXNKRSRNAVTHDTNNYHKHGFSRLPGAEEDFNKWTVAQLREFLSVFRCLDHAGHSAYLKGPLAELAGQVVAMIKKCGLLNSNQAFRHPVPDLSSFQDKERMVMPELPGPRSRISGFEHLQQHLPEMSKSVILQFLGQVNPISGEGSRVWYRGMQKVMDMGNLNRLWGVPAKNGLMYLGMS--AGASFSDTKTYEVRIQLRVEALDESAHPSAAEEE----------GRGVESGQWPRPPLVALGVVAALCECPAGISGGCSHTAMVLFLTRLLQMTEDELATFNPSTCTGRACSWIMQN 726          
BLAST of mRNA_H-canaliculatus_F_contig10570.556.1 vs. uniprot
Match: A0A6H5KVY6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY6_9PHAE)

HSP 1 Score: 306 bits (783), Expect = 4.200e-93
Identity = 173/316 (54.75%), Postives = 216/316 (68.35%), Query Frame = 1
Query:    1 GTLALSPLATRIAWGDLDARTGREWAPPLEDTAPISGRSGRNPAGSTQSSTLPGSTPFPEPGPNLQT-RTPATHDTNNFASDGFNRLPAAGERYSDWTVPQLREFLSVFRCLDNAGTSGFNKAVLTKLSADIVSLIRKSGHLGQNLAFRHPVPDLRPFEEKEKALMPELPAERLRIKEWVAMRRYLPEVSKSVILGFLQEVNPLADHGTRVWYRAEQRVLDMGNLNRFWAVPSKDESMWLGTRRVAGASYSADKDYRVRVHLSVKELYDSPDPTAMEEQQEEEEVESEGGVGID--STKRLVALKVVSALCECPAG 939
            GTL LSPLA+ +A GD+   TG EW PPL  TA   G++    A   +    P       P  + +T R     +TNN+ + GF+RLP   E Y+ WTVP+LREFL+VFRCLDNAGTSGFNKA+L +++ D+V LIR  G L  NLAFRHPVPDL  FEEKE  LMP+LPA  LRIKEW AMRR+LPE+SK+VIL F++EVN LA  G+R+WYR+ QRVLDMGNL+RFWAV +    MW+GT   AGAS+SADK+YRVR+ L V+E+ ++  PT   E            VG D  S + LVAL+V++ALCECPAG
Sbjct:  576 GTLELSPLASGVARGDVCPLTGGEWDPPL-GTAQAKGQAAGEDASRPKKKVTPEIASSRPPNASSRTSRARGPQETNNYRAHGFSRLPGETEDYTKWTVPKLREFLTVFRCLDNAGTSGFNKALLAQMAGDVVRLIRSCGVLDTNLAFRHPVPDLSSFEEKEARLMPDLPATGLRIKEWSAMRRHLPEISKAVILRFMREVNKLAGEGSRLWYRSLQRVLDMGNLSRFWAVSAAGGIMWIGTS--AGASFSADKEYRVRIKLRVEEVDENAPPT---EXXXXXXXXXXXVVGNDPRSAQTLVALEVIAALCECPAG 885          
BLAST of mRNA_H-canaliculatus_F_contig10570.556.1 vs. uniprot
Match: D7FZU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU5_ECTSI)

HSP 1 Score: 284 bits (727), Expect = 4.500e-88
Identity = 152/262 (58.02%), Postives = 184/262 (70.23%), Query Frame = 1
Query:    1 GTLALSPLATRIAWGDLDARTGREWAPPLEDTAPISGRSGRNPAGSTQSSTLPGSTPF-PEPGPNLQTRTPATHDTNNFASDGFNRLPAAGERYSDWTVPQLREFLSVFRCLDNAGTSGFNKAVLTKLSADIVSLIRKSGHLGQNLAFRHPVPDLRPFEEKEKALMPELPAERLRIKEWVAMRRYLPEVSKSVILGFLQEVNPLADHGTRVWYRAEQRVLDMGNLNRFWAVPSKDESMWLGTRRVAGASYSADKDYRVRVHL 783
            GTL LSPLA+R+A GD+   TGREW PPL  TA   G++    AG  +    P +    P    +  +R     DTNN+   GF+RLP   E Y+ WTVP+LREFLSVFRCLDN GTSG NKA+L +++ D+V LIR  G L  NLAFRHP PDL  FEEKE  LMP+LPA  LRIKEW AMRRYLPE+SK+VIL F++EVN LA  G+R+WYR+ QRVLDMGNL+RFW V +    MW+GT   AGAS+SADK+YRVR+ L
Sbjct:  288 GTLELSPLASRVARGDICLLTGREWDPPL-GTAQGKGQAAGADAGRQKKKATPETASSRPSNASSRASRARGPQDTNNYREHGFSRLPGETEDYTKWTVPKLREFLSVFRCLDNTGTSGLNKALLAQMAGDVVRLIRSCGVLDTNLAFRHPFPDLSSFEEKEARLMPDLPATGLRIKEWSAMRRYLPEISKAVILRFMREVNKLAGKGSRLWYRSLQRVLDMGNLSRFWTVQAAGSIMWIGTS--AGASFSADKEYRVRIKL 546          
BLAST of mRNA_H-canaliculatus_F_contig10570.556.1 vs. uniprot
Match: D7G3Y3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Y3_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 2.530e-66
Identity = 121/256 (47.27%), Postives = 161/256 (62.89%), Query Frame = 1
Query:    1 GTLALSPLATRIAWGDLDARTGREWAPPLEDTAPISGRSGRNPAGSTQSSTLPGSTP----------------FPEPGPNLQTRTPATHDTNNFASDGFNRLPAAGERYSDWTVPQLREFLSVFRCLDNAGTSGFNKAVLTKLSADIVSLIRKSGHLGQNLAFRHPVPDLRPFEEKEKALMPELPAERLRIKEWVAMRRYLPEVSKSVILGFLQEVNPLADHGTRVWYRAEQRVLDMGNLNRFWAVPSKDESMWLG 720
            GTL  S +A+ IA G++   TG+ WAPPL +T        R      +++  PGS P                      N ++R   THDTNN+   GF+RLP A E ++ WTV QLREFLSVFRCLD+AG S + K  L +L+  IV++I+K G L  N AFRHPVPDL  F++KE+  MPELP  R RI  +  ++++LPE+SKSVIL FL++VNP++  G+RVWYR  Q+V DMGNLNR W VP+K+  M+LG
Sbjct:   32 GTLEFSSVASGIASGEVSPTTGQVWAPPLLET--------RIAQEFRRATRRPGSQPPXXXXXXXXXXXXXXXXXSTSRNKRSRKAVTHDTNNYHKHGFSRLPGAEEDFNKWTVAQLREFLSVFRCLDHAGHSAYLKGPLVELAGQIVAMIKKCGLLNSNQAFRHPVPDLSSFQDKERMAMPELPGPRSRISGFEHLQQHLPEMSKSVILQFLRQVNPISGEGSRVWYRGMQKVTDMGNLNRLWGVPAKNGLMYLG 279          
BLAST of mRNA_H-canaliculatus_F_contig10570.556.1 vs. uniprot
Match: D7FQM4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM4_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 3.980e-60
Identity = 120/252 (47.62%), Postives = 162/252 (64.29%), Query Frame = 1
Query:    1 GTLALSPLATRIAWGDLDARTGREWAPPLEDT--APISGRSGRNPAGSTQSSTLPGSTPFP---EPGPNLQTRTPATHDTNNFASDGFNRLPAAGERYSDWTVPQLREFLSVFRCLDNAGTSGFNKAVLTKLSADIVSLIRKSGHLGQNLAFRHPVPDLRPFEEKEKALMPELPAERLRIKEWVAMRRYLPEVSKSVILGFLQEVNPLADHGTRVWYRAEQRVLDMGNLNRFWAVPSKDESMWLGTRRVAGA 741
            GTL  S +A+ IA G++   TG+ WAPPL +T  A    R+ R  AGS                  G N ++R   THDTNN+   GF+RLP A E ++ WTV QLREFLSVFRCLD+AG S + K  L +L+  +V++I+K G L  N AFRHPVPDL  F++KE+  MP LP  R RI  +  ++++LPE+SKSVIL FL++VNP++  G+RV     Q+V+DMGNLNR W VP+K+  M+LG R V+ +
Sbjct:  148 GTLEFSSVASGIASGEVSPTTGQVWAPPLLETRIAQEFRRATRR-AGSQMPPXXXXXXXXXXDQSTGRNKRSRKAVTHDTNNYRKHGFSRLPGAEEDFNKWTVAQLREFLSVFRCLDHAGHSAYLKGPLAELAGQVVAMIKKCGLLNSNQAFRHPVPDLSSFQDKERMAMPGLPGPRSRISGFEHLQQHLPEMSKSVILQFLRQVNPISGEGSRV---GMQKVMDMGNLNRLWGVPAKNGLMYLGMRPVSAS 395          
BLAST of mRNA_H-canaliculatus_F_contig10570.556.1 vs. uniprot
Match: D7G4G5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G5_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 4.050e-51
Identity = 102/200 (51.00%), Postives = 126/200 (63.00%), Query Frame = 1
Query:  220 DTNNFASDGFNRLPAAGERYSDWTVPQLREFLSVFRCLDNAGTSGFNKAVLTKLSADIVSLIRKSGHLGQNLAFRHPVPDLRPFEEKEKALMPELPAERLRIKEWVAMRRYLPEVSKSVILGFLQEVNPLADHGTRVWYRAEQRVLDMGNLNRFWAVPSKDESMWLGTRRVAGASYSADKDYRVRVHLSVKELYDSPDPT 819
            DTNN+   GF+RLP   E Y+ WTVP+LREF+SV+RCLDNAGTSGFNKA+L +++ D+V +IR  G L  NLAFRHPVPDL  FEE+E  LMP+LPA  LRIK   A                                     VLDMGNL+RFWAVP+    MW+GT   AGAS+SADK+YRVR+ L V+E+ ++  PT
Sbjct:  361 DTNNYREHGFSRLPGETEDYTKWTVPKLREFVSVYRCLDNAGTSGFNKALLAQMAGDVVRVIRSCGVLDTNLAFRHPVPDLSSFEEEEARLMPDLPATGLRIKIAAA-------------------------------------VLDMGNLSRFWAVPAAGGIMWIGTS--AGASFSADKEYRVRIKLRVEEVDENAHPT 521          
BLAST of mRNA_H-canaliculatus_F_contig10570.556.1 vs. uniprot
Match: D7G2U9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2U9_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 6.000e-32
Identity = 61/115 (53.04%), Postives = 82/115 (71.30%), Query Frame = 1
Query:  400 LIRKSGHLGQNLAFRHPVPDLRPFEEKEKALMPELPAERLRIKEWVAMRRYLPEVSKSVILGFLQEVNPLADHGTRVWYRAEQRVLDMGNLNRFWAVPSKDESMWLGTRRVAGAS 744
            +I+K G L  N AFRHP+PDL  F++KE+  MPELP  R RI  +   +++LPE+SKSVIL F ++VNP++  G+RVWYR  Q+V+DMGNLNR W VP+K+  M+LG   V   S
Sbjct:    1 MIKKCGLLNSNQAFRHPIPDLSSFQDKERMAMPELPGPRSRISGFEHPQQHLPEMSKSVILQFPRQVNPISGEGSRVWYRGMQKVMDMGNLNRLWRVPAKNGLMYLGMSFVGALS 115          
BLAST of mRNA_H-canaliculatus_F_contig10570.556.1 vs. uniprot
Match: D7G6L7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L7_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 4.160e-31
Identity = 82/204 (40.20%), Postives = 110/204 (53.92%), Query Frame = 1
Query:    1 GTLALSPLATRIAWGDLDARTGREWAPPL------EDTAPISGRSGRNPAGSTQSSTLPGSTPFPEPGPNLQTRTPATHDTNNFASDGFNRLPAAGERYSDWTVPQLREFLSVFRCLDNAGTSGFNKAVLTKLSADIVSLIRKSGHLGQNLAFRHPVPDLRPFEEKEKALMPELPAERLRIKEWVAMRRYLPEVSKSVILGFLQ 594
            GTL  S +A+ IA G++   TG+ WAPPL      ++    + R G  P                  G N ++R   THDTNN+   GF+RLP A E ++ WTV QLREFLSV                       +V++I+K G L  N AFRHPVPDL  F++KE+  MPELP  R RI  +  ++++LPE+SKSVIL FL+
Sbjct:  148 GTLEFSYVASGIASGEVSPTTGQVWAPPLLEARMAQEFRRATRRPGSQPPXXXXXXXXXXXXXDQSTGRNKRSRKAVTHDTNNYHKHGFSRLPGAEEDFNKWTVAQLREFLSV----------------------QVVAMIKKCGLLNSNQAFRHPVPDLSSFQDKERMAMPELPGPRSRISGFEHLQQHLPEMSKSVILQFLR 329          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10570.556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FZG7_ECTSI3.450e-12658.06Exonuclease I Exo1 n=2 Tax=Ectocarpus siliculosus ... [more]
D7G0K2_ECTSI1.890e-12057.22Exonuclease 1 n=3 Tax=Ectocarpus TaxID=2879 RepID=... [more]
A0A6H5KFX7_9PHAE5.000e-10750.27Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5KVY6_9PHAE4.200e-9354.75Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FZU5_ECTSI4.500e-8858.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3Y3_ECTSI2.530e-6647.27Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7FQM4_ECTSI3.980e-6047.62Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G4G5_ECTSI4.050e-5151.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2U9_ECTSI6.000e-3253.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G6L7_ECTSI4.160e-3140.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10570contigH-canaliculatus_F_contig10570:2821..4634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score391.0
Seed ortholog evalue6.1e-106
Seed eggNOG ortholog2880.D7G495
KEGG koko:K10746
KEGG Pathwayko03430,map03430
EggNOG free text desc.5'-3' exodeoxyribonuclease activity
EggNOG OGsCOG0258@1,KOG2518@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons4
Model size1071
Cds size1071
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10570.556.1prot_H-canaliculatus_F_contig10570.556.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10570 2821..4634 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928710.8981373-CDS-H-canaliculatus_F_contig10570:2820..31601622928710.8981373-CDS-H-canaliculatus_F_contig10570:2820..3160Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10570 2821..3160 -
1696845534.260729-CDS-H-canaliculatus_F_contig10570:2820..31601696845534.260729-CDS-H-canaliculatus_F_contig10570:2820..3160Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10570 2821..3160 -
1622928710.9939387-CDS-H-canaliculatus_F_contig10570:3497..39101622928710.9939387-CDS-H-canaliculatus_F_contig10570:3497..3910Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10570 3498..3910 -
1696845534.2717817-CDS-H-canaliculatus_F_contig10570:3497..39101696845534.2717817-CDS-H-canaliculatus_F_contig10570:3497..3910Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10570 3498..3910 -
1622928711.0098224-CDS-H-canaliculatus_F_contig10570:4253..44781622928711.0098224-CDS-H-canaliculatus_F_contig10570:4253..4478Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10570 4254..4478 -
1696845534.291522-CDS-H-canaliculatus_F_contig10570:4253..44781696845534.291522-CDS-H-canaliculatus_F_contig10570:4253..4478Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10570 4254..4478 -
1622928711.0235176-CDS-H-canaliculatus_F_contig10570:4541..46341622928711.0235176-CDS-H-canaliculatus_F_contig10570:4541..4634Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10570 4542..4634 -
1696845534.3027987-CDS-H-canaliculatus_F_contig10570:4541..46341696845534.3027987-CDS-H-canaliculatus_F_contig10570:4541..4634Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10570 4542..4634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10570.556.1

>prot_H-canaliculatus_F_contig10570.556.1 ID=prot_H-canaliculatus_F_contig10570.556.1|Name=mRNA_H-canaliculatus_F_contig10570.556.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=357bp
GTLALSPLATRIAWGDLDARTGREWAPPLEDTAPISGRSGRNPAGSTQSS
TLPGSTPFPEPGPNLQTRTPATHDTNNFASDGFNRLPAAGERYSDWTVPQ
LREFLSVFRCLDNAGTSGFNKAVLTKLSADIVSLIRKSGHLGQNLAFRHP
VPDLRPFEEKEKALMPELPAERLRIKEWVAMRRYLPEVSKSVILGFLQEV
NPLADHGTRVWYRAEQRVLDMGNLNRFWAVPSKDESMWLGTRRVAGASYS
ADKDYRVRVHLSVKELYDSPDPTAMEEQQEEEEVESEGGVGIDSTKRLVA
LKVVSALCECPAGLGGGCSHVAMVLFLARLLQMSPDELATFNPSTCTGRA
CAWIMKH
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mRNA from alignment at H-canaliculatus_F_contig10570:2821..4634-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10570.556.1 ID=mRNA_H-canaliculatus_F_contig10570.556.1|Name=mRNA_H-canaliculatus_F_contig10570.556.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1814bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10570:2821..4634- (Hapterophycus canaliculatus Oshoro5f female)
GGCACGCTAGCGCTATCACCCCTAGCAACGAGGATAGCTTGGGGCGATCT GGACGCGCGGACCGGGCGGGAGTGGGCCCCGCCGTTAGAGGACGTACAAG CGAATATTACGCCTCGGAGCAGCCGTCTACGGGGTGGGGCCGGCGGGTCC CGAAAGACAGCACCTATTTCAGGACGCAGCGGGAGGAATCCGGCCGGGAG TACACAGAGTAGTACACTACCTGGCTCGACACCCTTTCCGGAGCCGGGTC CAAACCTGCAGACACGCACACCCGCTACCCACGACACCAACAACTTCGCT TCGGACGGATTTAACCGACTACCGGCGGCAGGAGAGCGATACAGCGATTG GACCGTCCCGCAGCTTCGTGAATTCCTCAGCGTGAGTTTAATCTGCCTGC AAGAGTCTTTGATCGCCGTCGGGCCGCCCAGGGTGAGGTGGTTTCCTTCG CGCACGTCCTCGACCTTGTTTTTGGTAATCACGAAGTCGACAGGCAGATG CCTCATCCTGCCGGGTACAAAGGACACGTTGACCTGCCTAAGCGTGGTTT GTGTGCTATTGATGCGACCAAGACTGCACTCCCCCCCCCCCCCCCAACCA GTATTCCTGGGTATCTCGCTATGAGTAATACTTGACGAAGGCCGTGCTTG GCCGCTATCCCCGCCAGCTTATCGACAAAAAAATGGCACTGCACCACGTA ACCGCAACCACCTTTTACCTCCAGGTGTTCAGGTGTCTGGATAACGCCGG CACAAGCGGGTTCAACAAGGCTGTGCTCACTAAACTGTCGGCGGACATCG TGAGCCTAATCAGGAAGTCTGGGCATCTCGGCCAGAATCTGGCGTTTCGA CATCCGGTCCCGGACCTCAGACCCTTCGAAGAGAAGGAGAAAGCGTTGAT GCCGGAGCTGCCCGCGGAACGCTTGCGGATCAAGGAGTGGGTGGCTATGC GTCGATACCTCCCAGAGGTATCGAAGTCAGTGATCCTCGGTTTCCTGCAA GAGGTCAACCCTCTGGCAGACCACGGGACGCGGGTCTGGTATCGAGCGGA GCAGCGCGTGTTAGACATGGGGAACCTGAATAGGTTTTGGGCCGTCCCGT CCAAGGACGAGAGCATGTGGCTCGGAACCAGGCGAGTGTGAGGCGGCGGG GTACGGGAGAAGGGACAATACACGAGATCGCCCAGACGAGTGCTCATGTG CGGAGACGAACCACAAATCTCGAAGACCGTTTGACGTTCGTCACCTACTG TGTATCCGCGTCGCGAGATCCTCTCTTGTTGGGTGGCAGTCAGCCACCTG AAAACCAGCGAAGAACAACCCGCAATCCTGCACGTAGCTTGCTACATTAG AAGGTACTCGGCACCACCTAGTCAGTTAACCAGGTTAGCTGCGCGATTGC CGTATCTGTTTTCGCGTCCCTGCATGACGACAACTCGACACACTTCCTCC GTGTCGATGTCCCTGGAAACACAGCGCGGGCGCATCCTATTCCGCGGACA AAGACTACCGCGTCCGCGTCCACTTGAGCGTGAAGGAGCTATACGACAGC CCAGACCCTACGGCGATGGAAGAGCAGCAGGAGGAAGAGGAGGTGGAGAG CGAGGGAGGGGTGGGGATTGATTCGACGAAACGCCTCGTCGCGCTAAAGG TCGTGTCAGCTCTTTGCGAGTGTCCAGCCGGACTCGGCGGTGGGTGTTCG CACGTCGCCATGGTCCTGTTTTTAGCCCGCTTGCTGCAGATGAGTCCCGA CGAGCTAGCCACGTTCAACCCGTCCACTTGCACGGGCCGAGCTTGTGCCT GGATAATGAAGCAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10570:2821..4634-

>mRNA_H-canaliculatus_F_contig10570.556.1 ID=mRNA_H-canaliculatus_F_contig10570.556.1|Name=mRNA_H-canaliculatus_F_contig10570.556.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2142bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10570:2821..4634- (Hapterophycus canaliculatus Oshoro5f female)
GGCACGCTAGCGCTATCACCCCTAGCAACGAGGATAGCTTGGGGCGATCT
GGACGCGCGGACCGGGCGGGAGTGGGCCCCGCCGTTAGAGGACGGCACGC
TAGCGCTATCACCCCTAGCAACGAGGATAGCTTGGGGCGATCTGGACGCG
CGGACCGGGCGGGAGTGGGCCCCGCCGTTAGAGGACACAGCACCTATTTC
AGGACGCAGCGGGAGGAATCCGGCCGGGAGTACACAGAGTAGTACACTAC
CTGGCTCGACACCCTTTCCGGAGCCGGGTCCAAACCTGCAGACACGCACA
CCCGCTACCCACGACACCAACAACTTCGCTTCGGACGGATTTAACCGACT
ACCGGCGGCAGGAGAGCGATACAGCGATTGGACCGTCCCGCAGCTTCGTG
AATTCCTCAGCACAGCACCTATTTCAGGACGCAGCGGGAGGAATCCGGCC
GGGAGTACACAGAGTAGTACACTACCTGGCTCGACACCCTTTCCGGAGCC
GGGTCCAAACCTGCAGACACGCACACCCGCTACCCACGACACCAACAACT
TCGCTTCGGACGGATTTAACCGACTACCGGCGGCAGGAGAGCGATACAGC
GATTGGACCGTCCCGCAGCTTCGTGAATTCCTCAGCGTGTTCAGGTGTCT
GGATAACGCCGGCACAAGCGGGTTCAACAAGGCTGTGCTCACTAAACTGT
CGGCGGACATCGTGAGCCTAATCAGGAAGTCTGGGCATCTCGGCCAGAAT
CTGGCGTTTCGACATCCGGTCCCGGACCTCAGACCCTTCGAAGAGAAGGA
GAAAGCGTTGATGCCGGAGCTGCCCGCGGAACGCTTGCGGATCAAGGAGT
GGGTGGCTATGCGTCGATACCTCCCAGAGGTATCGAAGTCAGTGATCCTC
GGTTTCCTGCAAGAGGTCAACCCTCTGGCAGACCACGGGACGCGGGTCTG
GTATCGAGCGGAGCAGCGCGTGTTAGACATGGGGAACCTGAATAGGTTTT
GGGCCGTCCCGTCCAAGGACGAGAGCATGTGGCTCGGAACCAGGCGAGTG
TGTTCAGGTGTCTGGATAACGCCGGCACAAGCGGGTTCAACAAGGCTGTG
CTCACTAAACTGTCGGCGGACATCGTGAGCCTAATCAGGAAGTCTGGGCA
TCTCGGCCAGAATCTGGCGTTTCGACATCCGGTCCCGGACCTCAGACCCT
TCGAAGAGAAGGAGAAAGCGTTGATGCCGGAGCTGCCCGCGGAACGCTTG
CGGATCAAGGAGTGGGTGGCTATGCGTCGATACCTCCCAGAGGTATCGAA
GTCAGTGATCCTCGGTTTCCTGCAAGAGGTCAACCCTCTGGCAGACCACG
GGACGCGGGTCTGGTATCGAGCGGAGCAGCGCGTGTTAGACATGGGGAAC
CTGAATAGGTTTTGGGCCGTCCCGTCCAAGGACGAGAGCATGTGGCTCGG
AACCAGGCGAGTCGCGGGCGCATCCTATTCCGCGGACAAAGACTACCGCG
TCCGCGTCCACTTGAGCGTGAAGGAGCTATACGACAGCCCAGACCCTACG
GCGATGGAAGAGCAGCAGGAGGAAGAGGAGGTGGAGAGCGAGGGAGGGGT
GGGGATTGATTCGACGAAACGCCTCGTCGCGCTAAAGGTCGTGTCAGCTC
TTTGCGAGTGTCCAGCCGGACTCGGCGGTGGGTGTTCGCACGTCGCCATG
GTCCTGTTTTTAGCCCGCTTGCTGCAGATGAGTCCCGACGAGCTAGCCAC
GTTCAACCCGTCCACTTGCACGGGCCGAGCTTGTGCCTGGATAATGAAGC
ACCGCGGGCGCATCCTATTCCGCGGACAAAGACTACCGCGTCCGCGTCCA
CTTGAGCGTGAAGGAGCTATACGACAGCCCAGACCCTACGGCGATGGAAG
AGCAGCAGGAGGAAGAGGAGGTGGAGAGCGAGGGAGGGGTGGGGATTGAT
TCGACGAAACGCCTCGTCGCGCTAAAGGTCGTGTCAGCTCTTTGCGAGTG
TCCAGCCGGACTCGGCGGTGGGTGTTCGCACGTCGCCATGGTCCTGTTTT
TAGCCCGCTTGCTGCAGATGAGTCCCGACGAGCTAGCCACGTTCAACCCG
TCCACTTGCACGGGCCGAGCTTGTGCCTGGATAATGAAGCAC
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