mRNA_H-canaliculatus_F_contig10566.550.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10566.550.1
Unique NamemRNA_H-canaliculatus_F_contig10566.550.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig10566.550.1 vs. uniprot
Match: A0A6H5JIB4_9PHAE (Importin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIB4_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 3.820e-36
Identity = 67/73 (91.78%), Postives = 70/73 (95.89%), Query Frame = 1
Query:    1 PNPQSIAQACLDSMALQLPTKHTFVPLMDLCNTFLSSPEPHVRKAAVAALGVMSEGCAEPIKARLADILPKIL 219
            PNPQSIAQACLDSMALQLPTKHTF PLMDLCN+FL SPEPH+RKAAVA+LGVMSEGCAEPIKARL DILPKIL
Sbjct:  339 PNPQSIAQACLDSMALQLPTKHTFAPLMDLCNSFLGSPEPHMRKAAVASLGVMSEGCAEPIKARLPDILPKIL 411          
BLAST of mRNA_H-canaliculatus_F_contig10566.550.1 vs. uniprot
Match: A0A7S4VET3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VET3_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 7.590e-14
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    1 PNPQSIAQACLDSMALQLPTKHTFVPLMDLCNTFLSSPEPHVRKAAVAALGVMSEGCAEPIKARLADILPKI 216
            P   S+AQ  LD +A +LP K+ F P++  C T L+SP  H RKA +A LGV++EGCAEP++  L D++P +
Sbjct:  352 PTETSMAQGTLDMLACELPKKYIFNPVVSRCVTRLTSPHAHHRKAGIACLGVIAEGCAEPLREHLPDVMPHV 423          
BLAST of mRNA_H-canaliculatus_F_contig10566.550.1 vs. uniprot
Match: A0A1E7F5F2_9STRA (ARM repeat-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F5F2_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.430e-13
Identity = 33/73 (45.21%), Postives = 52/73 (71.23%), Query Frame = 1
Query:    1 PNPQSIAQACLDSMALQLPTKHTFVPLMDLCNTFLSSPEPHVRKAAVAALGVMSEGCAEPIKARLADILPKIL 219
            P   S+AQ  LD +A ++P K+ F P++  C   L+SP+P++RKA VA LGV++EGC+EP+   LA+++P +L
Sbjct:  315 PTETSMAQGTLDMLACEIPKKYIFQPVVSRCVQRLNSPQPNLRKAGVACLGVIAEGCSEPLSDHLAELMPYVL 387          
BLAST of mRNA_H-canaliculatus_F_contig10566.550.1 vs. uniprot
Match: A0A835ZQ81_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ81_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.440e-13
Identity = 42/89 (47.19%), Postives = 50/89 (56.18%), Query Frame = 1
Query:    1 PNPQSIAQ----------------ACLDSMALQLPTKHTFVPLMDLCNTFLSSPEPHVRKAAVAALGVMSEGCAEPIKARLADILPKIL 219
            PN QSIAQ                A LD +AL LP +  F P M+LC     SP+PH RKA VA +GV++EGC E I+  L  ILPKIL
Sbjct:  714 PNTQSIAQXXXXXXXXXXXXXXXXAALDQLALYLPGRFIFPPAMELCGQCFDSPDPHTRKAGVAVMGVITEGCNELIRMNLDQILPKIL 802          
BLAST of mRNA_H-canaliculatus_F_contig10566.550.1 vs. uniprot
Match: A0A7S4MQ84_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MQ84_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.950e-13
Identity = 33/72 (45.83%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    1 PNPQSIAQACLDSMALQLPTKHTFVPLMDLCNTFLSSPEPHVRKAAVAALGVMSEGCAEPIKARLADILPKI 216
            P+  S+AQ  LD +A +LP ++ F P++  C   LSSP P+ RKA +A LGV++EGCAEP++  L D++P +
Sbjct:  249 PSETSMAQGTLDMLACELPKRYIFQPVVSRCVARLSSPHPNHRKAGIACLGVVAEGCAEPLREHLNDVMPHV 320          
BLAST of mRNA_H-canaliculatus_F_contig10566.550.1 vs. uniprot
Match: A0A7S2VZY9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VZY9_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 6.750e-13
Identity = 32/68 (47.06%), Postives = 48/68 (70.59%), Query Frame = 1
Query:   13 SIAQACLDSMALQLPTKHTFVPLMDLCNTFLSSPEPHVRKAAVAALGVMSEGCAEPIKARLADILPKI 216
            S+AQ  LD +A ++P K+ F PL+  C T L SP+ + RKA +A LGV++EGCAEP++  L D++P +
Sbjct:  348 SMAQGTLDMLACEIPKKYIFNPLISRCITRLQSPQANQRKAGIACLGVIAEGCAEPLREHLPDVMPHV 415          
BLAST of mRNA_H-canaliculatus_F_contig10566.550.1 vs. uniprot
Match: K0RCI5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RCI5_THAOC)

HSP 1 Score: 70.9 bits (172), Expect = 1.270e-12
Identity = 31/67 (46.27%), Postives = 49/67 (73.13%), Query Frame = 1
Query:   16 IAQACLDSMALQLPTKHTFVPLMDLCNTFLSSPEPHVRKAAVAALGVMSEGCAEPIKARLADILPKI 216
            +AQ  LD +A ++P K+ F P++  C + L+SP+P  RKA VA LGV++EGCAEP++  LA+++P +
Sbjct:  358 MAQGTLDMLACEVPKKYIFEPVVSRCMSRLASPDPAQRKAGVACLGVIAEGCAEPLREHLAEVMPHV 424          
BLAST of mRNA_H-canaliculatus_F_contig10566.550.1 vs. uniprot
Match: A0A7S0CGN7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CGN7_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 8.210e-12
Identity = 32/73 (43.84%), Postives = 48/73 (65.75%), Query Frame = 1
Query:    1 PNPQSIAQACLDSMALQLPTKHTFVPLMDLCNTFLSSPEPHVRKAAVAALGVMSEGCAEPIKARLADILPKIL 219
            P   S+AQ  LD +A +LP K+ + P+M  C T LSS  P+ RKA +A LGV++EGC E ++  L +++P +L
Sbjct:  362 PTATSMAQGTLDMLACELPKKYIYQPVMSRCVTRLSSTNPNQRKAGIACLGVIAEGCTESMREHLPEVVPHVL 434          
BLAST of mRNA_H-canaliculatus_F_contig10566.550.1 vs. uniprot
Match: A0A448YYP5_9STRA (Importin N-terminal domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYP5_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.940e-11
Identity = 30/73 (41.10%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    1 PNPQSIAQACLDSMALQLPTKHTFVPLMDLCNTFLSSPEPHVRKAAVAALGVMSEGCAEPIKARLADILPKIL 219
            P   S+AQ  LD +A ++P K+ F P++  C   L+SP+ + RKA +A+LGV++EGC EP+   L++++P +L
Sbjct:  346 PTETSMAQGTLDMLACEVPKKYIFQPVVSRCVQRLNSPQANHRKAGIASLGVIAEGCQEPLSDHLSELMPYVL 418          
BLAST of mRNA_H-canaliculatus_F_contig10566.550.1 vs. uniprot
Match: A0A7S2LHD8_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LHD8_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 9.970e-11
Identity = 29/67 (43.28%), Postives = 45/67 (67.16%), Query Frame = 1
Query:   16 IAQACLDSMALQLPTKHTFVPLMDLCNTFLSSPEPHVRKAAVAALGVMSEGCAEPIKARLADILPKI 216
            +AQ  LD +A ++P K  F P++  C + L S +P  RKA +A LGV++EGCAEP++  LA ++P +
Sbjct:   58 MAQGTLDMLACEVPKKFIFEPVVSRCMSRLGSTDPKQRKAGIACLGVIAEGCAEPLRENLAQVMPHV 124          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10566.550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIB4_9PHAE3.820e-3691.78Importin N-terminal domain-containing protein n=2 ... [more]
A0A7S4VET3_9STRA7.590e-1447.22Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
A0A1E7F5F2_9STRA1.430e-1345.21ARM repeat-containing protein n=1 Tax=Fragilariops... [more]
A0A835ZQ81_9STRA1.440e-1347.19Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A7S4MQ84_9STRA1.950e-1345.83Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S2VZY9_9STRA6.750e-1347.06Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
K0RCI5_THAOC1.270e-1246.27Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S0CGN7_9STRA8.210e-1243.84Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A448YYP5_9STRA3.940e-1141.10Importin N-terminal domain-containing protein n=1 ... [more]
A0A7S2LHD8_9STRA9.970e-1143.28Hypothetical protein n=2 Tax=Skeletonema marinoi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10566contigH-canaliculatus_F_contig10566:3956..4174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.0
Seed ortholog evalue8.6e-31
Seed eggNOG ortholog2880.D7FQF7
KEGG koko:K20221
KEGG TC1.I.1
GOsGO:0000060,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0006606,GO:0006607,GO:0006610,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008139,GO:0008150,GO:0008565,GO:0012505,GO:0015031,GO:0015833,GO:0017038,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0033036,GO:0033218,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0042277,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061608,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0140104,GO:0140142
EggNOG free text desc.ribosomal protein import into nucleus
EggNOG OGsKOG2171@1,KOG2171@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928710.2301235-CDS-H-canaliculatus_F_contig10566:3955..41741622928710.2301235-CDS-H-canaliculatus_F_contig10566:3955..4174Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10566 3956..4174 +
1696845533.878415-CDS-H-canaliculatus_F_contig10566:3955..41741696845533.878415-CDS-H-canaliculatus_F_contig10566:3955..4174Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10566 3956..4174 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10566.550.1prot_H-canaliculatus_F_contig10566.550.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10566 3956..4174 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10566.550.1

>prot_H-canaliculatus_F_contig10566.550.1 ID=prot_H-canaliculatus_F_contig10566.550.1|Name=mRNA_H-canaliculatus_F_contig10566.550.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=73bp
PNPQSIAQACLDSMALQLPTKHTFVPLMDLCNTFLSSPEPHVRKAAVAAL
GVMSEGCAEPIKARLADILPKIL
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mRNA from alignment at H-canaliculatus_F_contig10566:3956..4174+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10566.550.1 ID=mRNA_H-canaliculatus_F_contig10566.550.1|Name=mRNA_H-canaliculatus_F_contig10566.550.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=219bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10566:3956..4174+ (Hapterophycus canaliculatus Oshoro5f female)
CCGAACCCCCAGTCGATCGCGCAGGCCTGCCTGGACTCGATGGCCCTGCA GCTCCCGACCAAGCACACGTTCGTCCCGCTCATGGACCTGTGCAACACGT TCCTAAGCAGCCCCGAGCCCCACGTTCGTAAGGCGGCGGTGGCGGCGCTG GGGGTCATGTCGGAGGGGTGCGCAGAGCCGATCAAGGCGCGCCTCGCGGA CATCCTGCCCAAGATTCTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10566:3956..4174+

>mRNA_H-canaliculatus_F_contig10566.550.1 ID=mRNA_H-canaliculatus_F_contig10566.550.1|Name=mRNA_H-canaliculatus_F_contig10566.550.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=438bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10566:3956..4174+ (Hapterophycus canaliculatus Oshoro5f female)
CCGAACCCCCAGTCGATCGCGCAGGCCTGCCTGGACTCGATGGCCCTGCA
GCTCCCGACCAAGCACACGTTCGTCCCGCTCATGGACCTGTGCAACACGT
TCCTAAGCAGCCCCGAGCCCCACGTTCGTAAGGCGGCGGTGGCGGCGCTG
GGGGTCATGTCGGAGGGGTGCGCAGAGCCGATCAAGGCGCGCCTCGCGGA
CATCCTGCCCAAGATTCTGCCGAACCCCCAGTCGATCGCGCAGGCCTGCC
TGGACTCGATGGCCCTGCAGCTCCCGACCAAGCACACGTTCGTCCCGCTC
ATGGACCTGTGCAACACGTTCCTAAGCAGCCCCGAGCCCCACGTTCGTAA
GGCGGCGGTGGCGGCGCTGGGGGTCATGTCGGAGGGGTGCGCAGAGCCGA
TCAAGGCGCGCCTCGCGGACATCCTGCCCAAGATTCTG
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