mRNA_H-canaliculatus_F_contig10529.511.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10529.511.1
Unique NamemRNA_H-canaliculatus_F_contig10529.511.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10529.511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10529contigH-canaliculatus_F_contig10529:228..4636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-12_006140.1
Exons6
Model size951
Cds size942
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928704.2671437-UTR-H-canaliculatus_F_contig10529:227..2361622928704.2671437-UTR-H-canaliculatus_F_contig10529:227..236Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10529 228..236 +
1696845531.2434218-UTR-H-canaliculatus_F_contig10529:227..2361696845531.2434218-UTR-H-canaliculatus_F_contig10529:227..236Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10529 228..236 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928704.284061-CDS-H-canaliculatus_F_contig10529:236..4181622928704.284061-CDS-H-canaliculatus_F_contig10529:236..418Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10529 237..418 +
1696845531.2527947-CDS-H-canaliculatus_F_contig10529:236..4181696845531.2527947-CDS-H-canaliculatus_F_contig10529:236..418Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10529 237..418 +
1622928704.3119366-CDS-H-canaliculatus_F_contig10529:1142..12751622928704.3119366-CDS-H-canaliculatus_F_contig10529:1142..1275Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10529 1143..1275 +
1696845531.2621398-CDS-H-canaliculatus_F_contig10529:1142..12751696845531.2621398-CDS-H-canaliculatus_F_contig10529:1142..1275Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10529 1143..1275 +
1622928704.3374705-CDS-H-canaliculatus_F_contig10529:2528..27171622928704.3374705-CDS-H-canaliculatus_F_contig10529:2528..2717Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10529 2529..2717 +
1696845531.2715728-CDS-H-canaliculatus_F_contig10529:2528..27171696845531.2715728-CDS-H-canaliculatus_F_contig10529:2528..2717Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10529 2529..2717 +
1622928704.3562734-CDS-H-canaliculatus_F_contig10529:3623..37791622928704.3562734-CDS-H-canaliculatus_F_contig10529:3623..3779Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10529 3624..3779 +
1696845531.281404-CDS-H-canaliculatus_F_contig10529:3623..37791696845531.281404-CDS-H-canaliculatus_F_contig10529:3623..3779Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10529 3624..3779 +
1622928704.3710206-CDS-H-canaliculatus_F_contig10529:4076..41661622928704.3710206-CDS-H-canaliculatus_F_contig10529:4076..4166Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10529 4077..4166 +
1696845531.2911642-CDS-H-canaliculatus_F_contig10529:4076..41661696845531.2911642-CDS-H-canaliculatus_F_contig10529:4076..4166Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10529 4077..4166 +
1622928704.3858838-CDS-H-canaliculatus_F_contig10529:4444..46361622928704.3858838-CDS-H-canaliculatus_F_contig10529:4444..4636Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10529 4445..4636 +
1696845531.3065653-CDS-H-canaliculatus_F_contig10529:4444..46361696845531.3065653-CDS-H-canaliculatus_F_contig10529:4444..4636Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10529 4445..4636 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10529.511.1prot_H-canaliculatus_F_contig10529.511.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10529 237..4636 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10529.511.1

>prot_H-canaliculatus_F_contig10529.511.1 ID=prot_H-canaliculatus_F_contig10529.511.1|Name=mRNA_H-canaliculatus_F_contig10529.511.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=314bp
MRQSGLAPNAVIYSTVISACERSDQWQKAVKLLRTMRNDGILPVTVTYNT
VISACGKSGQWSLAVSLLDEMSDLGCPPGPVTFASAMLACERARQWHHVL
RIMDQMQEDGVWVDKYAYTTAIHAAGQLGKWARCVQYLDEMDENGVAKDV
VTVSAAISACADKGQWAQAEKLMEGMLEDGLTPNVITYTSLMVVLRRGGQ
QEKAIRILDLMKAEARSSEHGVKPNVRSYSVAIAACADVKEWQRALALMN
EMEREGVPPNEVSYNTAIRACGDAGQLSEALSLMDEMEAKGVKASVVTYG
TAVAACQRKADWKM
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mRNA from alignment at H-canaliculatus_F_contig10529:228..4636+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10529.511.1 ID=mRNA_H-canaliculatus_F_contig10529.511.1|Name=mRNA_H-canaliculatus_F_contig10529.511.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4409bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10529:228..4636+ (Hapterophycus canaliculatus Oshoro5f female)
CTTCAGCAAATGCGCCAGTCGGGGTTGGCGCCGAACGCCGTGATCTACTC
GACCGTCATCAGCGCGTGCGAGCGGAGCGACCAGTGGCAGAAGGCGGTGA
AGCTTCTCCGCACCATGCGGAACGACGGCATCCTTCCCGTCACGGTCACG
TACAACACGGTCATCAGCGCCTGCGGGAAGAGCGGGCAGTGGTGAGTGGC
GAGGAGAGGGGCGCGCGCGCACGCCGGTTTCCGTAGAGTGTACCAGGTAG
TGTCGTTCGGCAGCAGGAAACGCGGCGGCGGCGGCGGCGGCGGCAAGTGG
GTTGTCGGGAAATCGAAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAAGGGGAGAGAGGAAAAGAG
AGAGAGACGCACGGGGAGGCAAAGCGCAAGGGAAGCAGTGGAAGATAGCA
GGAGTTAAACGCACGTGCTGGTAGGAAGACCGGCGGAGCGGCCCCTTTGG
GGGTTCATTCAGCGACCCCAACACTCACGGCTGACGCACGCCTAACACGT
GCGCACGCCGTCGAACACCCGCTTGCTCTCCAATGCCCGCATCTCGAATA
GCAAAGTGGATCTGAAACGAACGTTTTTGTAAAAGAGTTGGATCGGGCCG
AACCGAATCGGATGAAACCAAAGCAAAAAGGGTGTCGAGGGAGATCAGGA
GTGGGGGGTGATGATGACGGGACGACGGAAGTGGAAATGATGGAAGACAT
GCGTGTGTATCACGTGTGTGTGTATCTTCGAATGAAGTCTCCCGGAATGC
TCGAGAACAGTGAACAAAAAATTCGACGAAATCAGCCAGCCGAGGAGGAA
GGGACGTGCTCCAAAACACTCGTACACGATTCCAAACCTACCTAAAAAAT
GGAACGAAACTCAAGGTCGCTGGCGGTGAGCCTGCTGGACGAGATGTCCG
ACCTGGGTTGTCCCCCGGGGCCGGTCACGTTCGCAAGCGCCATGCTCGCC
TGCGAGCGCGCGAGGCAGTGGCATCACGTCCTCCGCATCATGGATCAGGT
GCGTGTGCGAGGGAGGGAAGAAGAGAGTTCGTCTCTGTTTTTTTTTTGGT
GTGAGTGCGTGGTTGCGTGATCTGCTCGTGCGAAACAGCGATCGTGCTCT
CGAGGCATTGCTTTGTCTTGGCATGGGTGTCATCACCGCTGCTTCTACGT
GCGACGCCCTCCCGCCTGTGCGTGGGTTGTTCACCGTGGCAGGCGGGGTA
CGTGTGTTGTGATGTCTGCTGACGTATGGCGTCAACTTGCCCGTGGACGT
CGTGCAAATGCTTGCGCGCTTTCATGACCCCCCCAACGCGCCCCGCCGAC
AAAAATCGTACTAAAGTATTTTGTAGAAGGGTGGAAGAGGGAAAATGAAA
AACGATCAAACCGTGCCGAGGATGCCGCGGCCCACACCGCACACACAAAC
GGAAAACTCGCTCGTCAGCCGCCGTCGCGTGCCGCCACACGTTCCGCGGG
GACCCGCGAAGTGGAACGTACCGCCGAGGCTCCCCAGAGACGCGCTGTGC
TTGCCGGCGTGCATGGCGCTGACGCCGACACACACCGACGATCGCCCGCA
ACCCACGAACCCGCCGCACGCACCACCCGTACGAGAACCTGTCGGACGAC
ACGCCCGCGTCTTGCGTCACAACCCTGTGCGATTACGAATCTGCGGAGCG
GAGGTGCGCAGCGCGCTTTGCCAGCCAAGGTTGAGGTTCTCGGAGCGGCG
TTACCGCGCACCCTGTCGCGACAGCGCGTGCTGCTGTAGCTGGGGTCCCG
TGAGTGAGGGAACTCCTCCGTTCGCACAAAGCGGCGTGTGATGACACTTT
TCGACGCCCACACGACGTCACACGTCGTGCGAGCACCAGCTCTCGACTCC
AACGTGGTGTCGCGCGGTTGCGATATCGAACGCGACGCCGATCAAGCGCA
GTCGCCCTCGATGTGCCGCGGAGGAGCCGTGTGTCGCCGCCGCGTCCACA
AGTGTGCCCGCTCACCTGTGTGAAGCGCTTCGGGACAAAAAAATTGGGAC
ATCGATTTTCTGCGGTCAGGAGATGAACCCAGCCGGGCTTCAAGGTGTAC
TGCATCCATACCTTTGCTTGCGGGACAAATCGAAGAACACGGGTTCCGCA
AAGAAGGGTAGCACAGCAGTAGCATGTCGTAGAAAGTACGGATAGGTAGG
CTCGGATGCGCACACGGCTGAACCCCCCCCCCACCGCCGCCGCCGCCGCC
GCCGCCCCTCGCCCTGCTCCCGCGACCCTCCATGTTGAATCGAAACGAAA
GATGCAAGAAGATGGCGTTTGGGTGGACAAGTACGCCTACACGACGGCCA
TCCACGCCGCAGGGCAGCTGGGCAAGTGGGCTCGTTGCGTGCAGTACCTG
GACGAGATGGACGAGAACGGGGTCGCGAAGGACGTCGTGACCGTCAGCGC
CGCGATCAGCGCGTGCGCGGACAAGGGGCAGTGGGCGCAGGTGCGTGCGT
GCGCGTCAGTTTGGTCTGTCCTGTCTCCCCTTTTGTTGGATTGATGTCTG
TCTGTTAGGAGCAGAAAGTACAGCGTGGTTGGCGGAAACCGGCTATAGCC
GATGAGAGGGAGTCGTCGGCCGCAGCGGGGAAGAGCAGGAAACGAAGAAG
TCAAAAAATGGTGAGCAAGAGGATTTTGCTCATCTCGGAGGTTGGGTGGG
TTGCCCTGGTGGGTGGCGCCCCCCCACCGGAGAGGAAGCGAAAACTTGTG
GAATATTTAATTGCTTGTACAGACTGTCGATCGTGTAAGTTGTACAAACC
GTCGATCGTGCTAACCGGCGACCAAAGAAACAACGAAAGCGCGTGTGTCG
GGGTGTGGTTGTGCGTGCGTCAGATTCAAATGCTAAACATGGCATGATAG
AGAAACTAAACCCGGTAGCAAGCAAGGTAAGGTAGCAAGCAAGCAAGGTG
AGGTAGCAAGCAAGCAAGGTGAGGTAGCAAGCAAGGTAAGGTAGCAAGCA
AGCAGAACGCTCAGGTTTCGTTGGTCCAAAGATCTTGAATTTTGCTAAGA
CCCTTCCGTACGCATGTCGATCGATCGATGCGTTGCAATATTGCACAGCA
AACAATGCGGGTTAAAACAAATAATGGCACCACACCCCTATCCTATCATG
CCGGTGCTGACCCTTTCCGAGTGACCGTGCGTGTTTGCGGTGTATGGAGG
GGCGGCAAGACTCAAGCTGAAGACACCGTCCTTGTGTGCTGTGCCGAAAG
GGTTGCGTCGCGCCGTAACATATGGTGTTTTTGTTGCTATTGTTGTGGTT
CTTGTTGTTGTTGTTTTTTGTGGCGGCAGACGATATGCTAATAGCGCACC
CCGACGCTCGTCGATTTCTTACGTACGGACACGCATGGAATCGAAGGCGG
AGAAGCTCATGGAGGGCATGCTGGAGGACGGCCTGACGCCCAACGTCATC
ACGTACACCTCGCTCATGGTGGTGCTGAGAAGGGGCGGCCAGCAGGAGAA
GGCCATCAGGATCCTTGACCTCATGAAGGCCGAGGCAAGATCGAGCGAGC
ATGTCGAGAACGGGGGGGGGAGGGGCAGAGAGTCACAGATGGAGAGGTGG
AGGATTGGGTCTAGGGTCTCATCCTGACACGGTCGTGAGGTCACGGCTTG
AGGTCTTCTCGGGTGCCACGGCGGAGGTGGTCGATTCGGTTGGTATGTTC
ACCCCCTTTTTGTTGGTGCTGTCGTGGGATATCCGCAATCAAGGCACACT
GCGGCGAACGGAGGCACGAGCTTGGCGCCTGTCTGACGATTGTTTTTCGT
CTCCACGTCTTGGTGGTCGTCGCCGCCCTTGCTGCTCTTCGTTTCTCAGG
GAGTCAAGCCCAACGTTCGGAGCTACAGCGTGGCCATAGCCGCGTGCGCT
GATGTCAAGGAGTGGCAGCGGGCGCTGGCGCTCATGAATGTACGTTTCAT
ACGAGACGAGGCACCAACCAGAGGCCGGGCCGGTTGATTCAACTGGCCTA
CAGTTTTCGTTGTTTTTCGTGCAGCGTTTCCTTCCGGACAACGCGCCCTC
CTCCGTCTCTTCAATCTCCTGTAGGTTCTGAGGATGATCTTTCACGGTTT
CCATGGGACGGGCTCTCACAGCCGGGAGTGAACTGGTTCTCTGGCACTCG
CTTCTTGCCGAAAGACGCAGACCCAACCCGAACCCACCGAAAACCAAAAA
CGTCCCCACGACGGCAGGAGATGGAGAGGGAGGGCGTGCCGCCCAACGAG
GTCTCGTACAACACGGCTATCAGGGCGTGCGGCGATGCCGGCCAGCTGTC
GGAGGCGCTGTCCCTGATGGACGAGATGGAGGCCAAGGGCGTCAAGGCTT
CCGTGGTCACCTACGGGACTGCCGTGGCCGCGTGCCAGAGGAAGGCGGAC
TGGAAAATG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10529:228..4636+

>mRNA_H-canaliculatus_F_contig10529.511.1 ID=mRNA_H-canaliculatus_F_contig10529.511.1|Name=mRNA_H-canaliculatus_F_contig10529.511.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1884bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10529:228..4636+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGCCAGTCGGGGTTGGCGCCGAACGCCGTGATCTACTCGACCGTCAT
CAGCGCGTGCGAGCGGAGCGACCAGTGGCAGAAGGCGGTGAAGCTTCTCC
GCACCATGCGGAACGACGGCATCCTTCCCGTCACGGTCACGTACAACACG
GTCATCAGCGCCTGCGGGAAGAGCGGGCAGTGATGCGCCAGTCGGGGTTG
GCGCCGAACGCCGTGATCTACTCGACCGTCATCAGCGCGTGCGAGCGGAG
CGACCAGTGGCAGAAGGCGGTGAAGCTTCTCCGCACCATGCGGAACGACG
GCATCCTTCCCGTCACGGTCACGTACAACACGGTCATCAGCGCCTGCGGG
AAGAGCGGGCAGTGGTCGCTGGCGGTGAGCCTGCTGGACGAGATGTCCGA
CCTGGGTTGTCCCCCGGGGCCGGTCACGTTCGCAAGCGCCATGCTCGCCT
GCGAGCGCGCGAGGCAGTGGCATCACGTCCTCCGCATCATGGATCAGGTC
GCTGGCGGTGAGCCTGCTGGACGAGATGTCCGACCTGGGTTGTCCCCCGG
GGCCGGTCACGTTCGCAAGCGCCATGCTCGCCTGCGAGCGCGCGAGGCAG
TGGCATCACGTCCTCCGCATCATGGATCAGATGCAAGAAGATGGCGTTTG
GGTGGACAAGTACGCCTACACGACGGCCATCCACGCCGCAGGGCAGCTGG
GCAAGTGGGCTCGTTGCGTGCAGTACCTGGACGAGATGGACGAGAACGGG
GTCGCGAAGGACGTCGTGACCGTCAGCGCCGCGATCAGCGCGTGCGCGGA
CAAGGGGCAGTGGGCGCAGATGCAAGAAGATGGCGTTTGGGTGGACAAGT
ACGCCTACACGACGGCCATCCACGCCGCAGGGCAGCTGGGCAAGTGGGCT
CGTTGCGTGCAGTACCTGGACGAGATGGACGAGAACGGGGTCGCGAAGGA
CGTCGTGACCGTCAGCGCCGCGATCAGCGCGTGCGCGGACAAGGGGCAGT
GGGCGCAGGCGGAGAAGCTCATGGAGGGCATGCTGGAGGACGGCCTGACG
CCCAACGTCATCACGTACACCTCGCTCATGGTGGTGCTGAGAAGGGGCGG
CCAGCAGGAGAAGGCCATCAGGATCCTTGACCTCATGAAGGCCGAGGCAA
GATCGAGCGAGCATGCGGAGAAGCTCATGGAGGGCATGCTGGAGGACGGC
CTGACGCCCAACGTCATCACGTACACCTCGCTCATGGTGGTGCTGAGAAG
GGGCGGCCAGCAGGAGAAGGCCATCAGGATCCTTGACCTCATGAAGGCCG
AGGCAAGATCGAGCGAGCATGGAGTCAAGCCCAACGTTCGGAGCTACAGC
GTGGCCATAGCCGCGTGCGCTGATGTCAAGGAGTGGCAGCGGGCGCTGGC
GCTCATGAATGGAGTCAAGCCCAACGTTCGGAGCTACAGCGTGGCCATAG
CCGCGTGCGCTGATGTCAAGGAGTGGCAGCGGGCGCTGGCGCTCATGAAT
GAGATGGAGAGGGAGGGCGTGCCGCCCAACGAGGTCTCGTACAACACGGC
TATCAGGGCGTGCGGCGATGCCGGCCAGCTGTCGGAGGCGCTGTCCCTGA
TGGACGAGATGGAGGCCAAGGGCGTCAAGGCTTCCGTGGTCACCTACGGG
ACTGCCGTGGCCGCGTGCCAGAGGAAGGCGGACTGGAAAATGGAGATGGA
GAGGGAGGGCGTGCCGCCCAACGAGGTCTCGTACAACACGGCTATCAGGG
CGTGCGGCGATGCCGGCCAGCTGTCGGAGGCGCTGTCCCTGATGGACGAG
ATGGAGGCCAAGGGCGTCAAGGCTTCCGTGGTCACCTACGGGACTGCCGT
GGCCGCGTGCCAGAGGAAGGCGGACTGGAAAATG
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