prot_H-canaliculatus_M_contigs7606.1.1 (polypeptide) Hapterophycus canaliculatus Oshoro7m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_M_contigs7606.1.1
Unique Nameprot_H-canaliculatus_M_contigs7606.1.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Sequence length112
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs. uniprot
Match: D8LGM6_ECTSI (RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM6_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 3.160e-47
Identity = 84/112 (75.00%), Postives = 93/112 (83.04%), Query Frame = 0
Query:    1 MRYTETRQQLGVQLGRAPTRKESAKACGVTVSAFEESLREGEEAKKTMVEANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYSAWWIQQSIFKVR 112
            M +   RQ+L   LGRAPT  E A++  +TV   EESL+ G  AKKTMVEANMRMVISIARKY+H GVPLTDLIQEGSLGL+RAVEKFDPERGFKLSTYSAWWIQQ+IFKVR
Sbjct:   39 MGHVGARQELAAGLGRAPTFSEWAESRRMTVVELEESLKVGGAAKKTMVEANMRMVISIARKYQHLGVPLTDLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAIFKVR 150          
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs. uniprot
Match: A0A6H5LBV0_9PHAE (RNA_pol_sigma70 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBV0_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 5.000e-44
Identity = 83/110 (75.45%), Postives = 92/110 (83.64%), Query Frame = 0
Query:    1 MRYTETRQQLGVQLGRAPTRKESAKACGVTVSAFEESLREGEEAKKTMVEANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYSAWWIQQSIFK 110
            M +  TRQ+L  +LGRAPT  E A++C  TV   EESL+    AKKTMVEANMRMVISIARKY+H GVPLTDLIQEGSLGL+RAVEKFDPERGFKLSTYSAWWIQQ+IFK
Sbjct:  297 MGHVGTRQELAARLGRAPTFSEWAESCRTTVVELEESLKVCGAAKKTMVEANMRMVISIARKYQHLGVPLTDLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAIFK 406          
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs. uniprot
Match: B7FPT1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FPT1_PHATC)

HSP 1 Score: 119 bits (299), Expect = 1.630e-30
Identity = 58/101 (57.43%), Postives = 77/101 (76.24%), Query Frame = 0
Query:   10 LGVQLGRAPTRKESAKACGVTVSAFEESLREGEEAKKTMVEANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYSAWWIQQSIFK 110
            L  +L R PT +E A ACG T + F E +    EAK+ MV++NMR+V+SIARKY + GV L DL+QEGSLGL RA EKF+P++GFK STY++WWIQQ++F+
Sbjct:   37 LSSKLMRLPTIEEWAAACGGTATDFVEMVMTSREAKQRMVQSNMRLVVSIARKYSNVGVSLQDLVQEGSLGLSRAAEKFEPKKGFKFSTYASWWIQQAVFR 137          
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs. uniprot
Match: A0A7S2WX55_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX55_9STRA)

HSP 1 Score: 121 bits (304), Expect = 3.220e-30
Identity = 59/109 (54.13%), Postives = 78/109 (71.56%), Query Frame = 0
Query:    3 YTETRQQLGVQLGRAPTRKESAKACGVTVSAFEESLREGEEAKKTMVEANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYSAWWIQQSIFKV 111
            + + R  L  QLGR PT +E A + G+        L  G+ AKK M+ +N+R+VISIA++Y+  G+ LTDLIQEGSLGL+RAVEKFDPE+GFK STYS WWI+Q+I + 
Sbjct:  191 WEDVRDGLKDQLGRPPTLEEWASSVGMQPDELRRKLLRGQSAKKAMISSNLRLVISIAKRYQKRGLALTDLIQEGSLGLVRAVEKFDPEKGFKFSTYSTWWIKQAILRA 299          
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs. uniprot
Match: A0A835ZEC7_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC7_9STRA)

HSP 1 Score: 118 bits (296), Expect = 8.940e-30
Identity = 60/114 (52.63%), Postives = 78/114 (68.42%), Query Frame = 0
Query:    1 MRYTETRQQLGVQLGRAPTRKESAKACGVTVSA---FEESLREGEEAKKTMVEANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYSAWWIQQSIFKV 111
            M     R QL   L R PT  E A+ACG        F ++ RE   AK  MV +NMR+VI++A++Y   GVPL+DL+QEGSLGLIRA EK+DP++GF+ STY+AWWIQQ+I+K 
Sbjct:   77 MAMESLRDQLQAALRRPPTDDEWAEACGYPADQRRLFRDAYRERLRAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKA 190          
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs. uniprot
Match: A0A835YXH6_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXH6_9STRA)

HSP 1 Score: 117 bits (293), Expect = 3.190e-29
Identity = 61/108 (56.48%), Postives = 76/108 (70.37%), Query Frame = 0
Query:    7 RQQLGVQLGRAPTRKESAKACGVTVS---AFEESLREGEEAKKTMVEANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYSAWWIQQSIFKV 111
            R QL V L R PT  E A+ACG T      F  +  +   AK  MV +NMR+VI++A++Y   GVPL+DL+QEGSLGLIRA EK+DP +GFK STY+AWWIQQ+IFK 
Sbjct:  105 RDQLEVALRRQPTDSEWAEACGYTREHRELFRAAYTDCLHAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPAKGFKFSTYAAWWIQQAIFKA 212          
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs. uniprot
Match: T2J1T0_CROWT (Cyanobacteria-specific RpoD-like sigma factor,type-3 @ Group 2 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 0005 TaxID=423472 RepID=T2J1T0_CROWT)

HSP 1 Score: 113 bits (282), Expect = 4.090e-29
Identity = 53/111 (47.75%), Postives = 79/111 (71.17%), Query Frame = 0
Query:    1 MRYTETRQQLGVQLGRAPTRKESAKACGVTVSAFEESLREGEEAKKTMVEANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYSAWWIQQSIFKV 111
            M + E +++L  +LG+ PT KE +K   +   A  ++L +GE AK+ M+EAN+R+V++IA+KY+   +   DLIQEGSLGL R VEKFDP +G+K STY+ WWI+Q+I + 
Sbjct:   49 MNFLEKKEELADKLGKEPTVKEWSKELEIEQKALNQALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRA 159          
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs. uniprot
Match: K9SR03_9SYNE (RNA polymerase sigma factor, cyanobacterial RpoD-like family n=2 Tax=Synechococcus sp. PCC 7502 TaxID=1173263 RepID=K9SR03_9SYNE)

HSP 1 Score: 116 bits (290), Expect = 4.160e-29
Identity = 54/111 (48.65%), Postives = 82/111 (73.87%), Query Frame = 0
Query:    1 MRYTETRQQLGVQLGRAPTRKESAKACGVTVSAFEESLREGEEAKKTMVEANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYSAWWIQQSIFKV 111
            M Y  T++ L  Q  R PT++E A+A G+  +A  ++L++G  AK+ M+EAN+R+V+S+A+KY+   + L DL+QEG+LGL RAV+KFDP +GFK STY+ WWI+Q+I + 
Sbjct:   55 MGYITTQETLSEQFDRLPTQEEWAQAVGLEPNALNDALKQGTRAKRKMIEANLRLVVSVAKKYQKRNLELLDLVQEGTLGLERAVDKFDPTKGFKFSTYAYWWIRQAITRA 165          
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs. uniprot
Match: A0A3B7MI62_9CYAN (RNA polymerase sigma factor, RpoD/SigA family n=3 Tax=Thermosynechococcus TaxID=146785 RepID=A0A3B7MI62_9CYAN)

HSP 1 Score: 115 bits (289), Expect = 5.150e-29
Identity = 56/111 (50.45%), Postives = 78/111 (70.27%), Query Frame = 0
Query:    1 MRYTETRQQLGVQLGRAPTRKESAKACGVTVSAFEESLREGEEAKKTMVEANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYSAWWIQQSIFKV 111
            M   E R+ L  +LGR PT +E A AC +T +     L+ GE AK+ M+EAN+R+V+S+A+KY+   + L DL+QEG+LGL R VEKFDP RG+K STY+ WWI+Q+I + 
Sbjct:   49 MALREKREALTKELGREPTFEEWAAACNLTPTELRNLLKRGERAKQKMIEANLRLVVSVAKKYQKRNLELLDLVQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRA 159          
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs. uniprot
Match: A0A5P8WJ03_9NOSO (RpoS, RNA polymerase nonessential primary sigma factor n=1 Tax=Nostoc sphaeroides CCNUC1 TaxID=2653204 RepID=A0A5P8WJ03_9NOSO)

HSP 1 Score: 110 bits (274), Expect = 7.700e-29
Identity = 55/111 (49.55%), Postives = 75/111 (67.57%), Query Frame = 0
Query:    1 MRYTETRQQLGVQLGRAPTRKESAKACGVTVSAFEESLREGEEAKKTMVEANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYSAWWIQQSIFKV 111
            M   E R  L +QL R PT +E A + G +    E  L +GE AK+ MV AN+R+V++IA+KY++  +   DLIQEG+LGL R VEKFDP +G+KLSTY+ WW+ QSI + 
Sbjct:    1 MAIEEQRSSLALQLNRQPTARELATSLGQSEGEVELILYQGERAKQKMVTANLRLVVAIAKKYQNRNLEFLDLIQEGTLGLYRGVEKFDPNKGYKLSTYAYWWVTQSITRA 111          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGM6_ECTSI3.160e-4775.00RNA polymerase, sigma 70 subunit, RpoD subfamily n... [more]
A0A6H5LBV0_9PHAE5.000e-4475.45RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
B7FPT1_PHATC1.630e-3057.43Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2WX55_9STRA3.220e-3054.13Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835ZEC7_9STRA8.940e-3052.63RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
A0A835YXH6_9STRA3.190e-2956.48RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
T2J1T0_CROWT4.090e-2947.75Cyanobacteria-specific RpoD-like sigma factor,type... [more]
K9SR03_9SYNE4.160e-2948.65RNA polymerase sigma factor, cyanobacterial RpoD-l... [more]
A0A3B7MI62_9CYAN5.150e-2950.45RNA polymerase sigma factor, RpoD/SigA family n=3 ... [more]
A0A5P8WJ03_9NOSO7.700e-2949.55RpoS, RNA polymerase nonessential primary sigma fa... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro7m male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000943RNA polymerase sigma-70PRINTSPR00046SIGMA70FCTcoord: 96..104
score: 63.58
coord: 72..85
score: 72.76
IPR000943RNA polymerase sigma-70PROSITEPS00715SIGMA70_1coord: 72..85
NoneNo IPR availableGENE3D1.10.601.10RNA Polymerase Primary Sigma Factorcoord: 6..111
e-value: 7.8E-38
score: 132.8
NoneNo IPR availablePANTHERPTHR30603RNA POLYMERASE SIGMA FACTOR RPOcoord: 4..110
NoneNo IPR availablePANTHERPTHR30603:SF45RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTICcoord: 4..110
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 48..108
e-value: 2.6E-17
score: 62.4
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 44..110
e-value: 4.1E-16
score: 57.0
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 30..110

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7606contigH-canaliculatus_M_contigs7606:3396..5149 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7606.1.1mRNA_H-canaliculatus_M_contigs7606.1.1Hapterophycus canaliculatus Oshoro7m malemRNAH-canaliculatus_M_contigs7606 3396..5149 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_M_contigs7606.1.1 ID=prot_H-canaliculatus_M_contigs7606.1.1|Name=mRNA_H-canaliculatus_M_contigs7606.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=112bp
MRYTETRQQLGVQLGRAPTRKESAKACGVTVSAFEESLREGEEAKKTMVE
ANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYS
AWWIQQSIFKVR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013325RNA_pol_sigma_r2
IPR014284RNA_pol_sigma-70_dom
IPR007627RNA_pol_sigma70_r2
IPR000943RNA_pol_sigma70