prot_H-canaliculatus_M_contigs7511.1.1 (polypeptide) Hapterophycus canaliculatus Oshoro7m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_M_contigs7511.1.1
Unique Nameprot_H-canaliculatus_M_contigs7511.1.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Sequence length76
Homology
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7511.1.1 vs. uniprot
Match: D7G9B5_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B5_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 2.320e-8
Identity = 25/31 (80.65%), Postives = 29/31 (93.55%), Query Frame = 0 
Query:    1 MACARTGQVEEGMYLLREMWARDVGRDLQTY 31
            MACAR GQ+EEGM+LLREMWAR+V RD+QTY
Sbjct: 1159 MACARAGQLEEGMFLLREMWAREVSRDVQTY 1189
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7511.1.1 vs. uniprot
Match: A0A6H5KZI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI4_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.330e-8
Identity = 25/31 (80.65%), Postives = 29/31 (93.55%), Query Frame = 0 
Query:    1 MACARTGQVEEGMYLLREMWARDVGRDLQTY 31
            MACAR GQ+EEGM+LLREMWAR+V RD+QTY
Sbjct: 1291 MACARAGQLEEGMFLLREMWAREVSRDVQTY 1321
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7511.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9B5_ECTSI2.320e-880.65PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KZI4_9PHAE2.330e-880.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro7m male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 2..22
e-value: 0.02
score: 15.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 30..62
e-value: 2.0E-4
score: 19.3
coord: 2..26
e-value: 5.0E-4
score: 18.1
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 27..73
e-value: 1.1E-7
score: 31.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 27..61
score: 9.229472
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..75
e-value: 1.2E-17
score: 65.9
NoneNo IPR availablePANTHERPTHR47936FAMILY NOT NAMEDcoord: 2..74

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7511contigH-canaliculatus_M_contigs7511:1103..1762 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7511.1.1mRNA_H-canaliculatus_M_contigs7511.1.1Hapterophycus canaliculatus Oshoro7m malemRNAH-canaliculatus_M_contigs7511 1103..1780 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_M_contigs7511.1.1 ID=prot_H-canaliculatus_M_contigs7511.1.1|Name=mRNA_H-canaliculatus_M_contigs7511.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=76bp
MACARTGQVEEGMYLLREMWARDVGRDLQTYNTAMALCKAAGEWTRAVGL
LEAMEAEGIAADAVTFNTVIAACEAG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat