mRNA_H-canaliculatus_M_contigs7511.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7511.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7511.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7511.1.1 vs.
Match: PPR_long (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B5_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 1.850e-12
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 VFNAGIMACARTGQVEEGMYLLREMWARDVGRDLQTY 111
            VFNAGIMACAR GQ+EEGM+LLREMWAR+V RD+QTY
Sbjct: 1153 VFNAGIMACARAGQLEEGMFLLREMWAREVSRDVQTY 1189
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BLAST of mRNA_H-canaliculatus_M_contigs7511.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI4_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.860e-12
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 VFNAGIMACARTGQVEEGMYLLREMWARDVGRDLQTY 111
            VFNAGIMACAR GQ+EEGM+LLREMWAR+V RD+QTY
Sbjct: 1285 VFNAGIMACARAGQLEEGMFLLREMWAREVSRDVQTY 1321
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7511.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
PPR_long1.850e-1283.78domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized1.860e-1283.78protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7511contigH-canaliculatus_M_contigs7511:1103..1780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G9B5
PFAMsPPR,PPR_2,PPR_3
Model size246
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.81e-09
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Descriptionendonuclease activity
Cds size228
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854088.859704-CDS-H-canaliculatus_M_contigs7511:1102..11891696854088.859704-CDS-H-canaliculatus_M_contigs7511:1102..1189Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7511 1103..1189 -
1696854088.8715825-CDS-H-canaliculatus_M_contigs7511:1621..17621696854088.8715825-CDS-H-canaliculatus_M_contigs7511:1621..1762Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7511 1622..1762 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854088.8929682-UTR-H-canaliculatus_M_contigs7511:1762..17801696854088.8929682-UTR-H-canaliculatus_M_contigs7511:1762..1780Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7511 1763..1780 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7511.1.1prot_H-canaliculatus_M_contigs7511.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7511 1103..1762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7511.1.1

>prot_H-canaliculatus_M_contigs7511.1.1 ID=prot_H-canaliculatus_M_contigs7511.1.1|Name=mRNA_H-canaliculatus_M_contigs7511.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=76bp
MACARTGQVEEGMYLLREMWARDVGRDLQTYNTAMALCKAAGEWTRAVGL
LEAMEAEGIAADAVTFNTVIAACEAG
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mRNA from alignment at H-canaliculatus_M_contigs7511:1103..1780-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7511.1.1 ID=mRNA_H-canaliculatus_M_contigs7511.1.1|Name=mRNA_H-canaliculatus_M_contigs7511.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=678bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7511:1103..1780- (Hapterophycus canaliculatus Oshoro7m male)
GTTTTTAACGCGGGTATAATGGCGTGCGCGCGGACGGGGCAGGTGGAGGA
GGGCATGTACCTCCTGAGGGAGATGTGGGCGAGGGACGTCGGGAGGGACC
TGCAGACGTACAACACGGCCATGGCCCTCTGCAAGGCGGCGGGCGAGTGG
ACGAGAGCGGTGCGTCCTGTGCCGTTTCGGGCCGTGCTGTCTGCGCGGGT
GACGTGGTGGCCGCGAGTTCGGGGGCCCGCCGTCGGTGCTGATGCTGATC
GAAATCTCGCCGAGACTCGACGGCGCTACTTTATTTTTTTTTCTATCTGT
GGCTGATTTCGAGCCTGTTTTCGTCGTCTGCGAAGTCGGGACTGCGAAGT
CGGGAAGGTTGGGTGCGCCGGTCGCTTGATCGACGCCGCGCAGAGCGGAG
AAGCAAAAACATTTTGTCTCGTCGTGGCTCTCGAGCAGATCGACCGCTTC
TTGATGTGCTTGCAAAGCGATCGTAGCGGATGGAGATCGGAGGCGAGGAC
CGTTTCCGCCGTTGACGGCAGATGGCGCTTATGTCTCGCCGCTGCTGCCG
CTGCTGCCGATGTTTATTGTGACGTTCGTCGATTGCACCAGGTGGGTTTG
CTGGAGGCGATGGAGGCCGAAGGCATCGCCGCCGACGCGGTCACGTTCAA
CACGGTCATCGCCGCTTGCGAGGCGGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7511:1103..1780-

>mRNA_H-canaliculatus_M_contigs7511.1.1 ID=mRNA_H-canaliculatus_M_contigs7511.1.1|Name=mRNA_H-canaliculatus_M_contigs7511.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=228bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7511:1103..1780- (Hapterophycus canaliculatus Oshoro7m male)
ATGGCGTGCGCGCGGACGGGGCAGGTGGAGGAGGGCATGTACCTCCTGAG
GGAGATGTGGGCGAGGGACGTCGGGAGGGACCTGCAGACGTACAACACGG
CCATGGCCCTCTGCAAGGCGGCGGGCGAGTGGACGAGAGCGGTGGGTTTG
CTGGAGGCGATGGAGGCCGAAGGCATCGCCGCCGACGCGGTCACGTTCAA
CACGGTCATCGCCGCTTGCGAGGCGGGG
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