mRNA_H-canaliculatus_M_contigs9995.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9995.2.1
Unique NamemRNA_H-canaliculatus_M_contigs9995.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs9995.2.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWM3_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 2.570e-55
Identity = 174/245 (71.02%), Postives = 186/245 (75.92%), Query Frame = 1 
Query:    1 GHGAGASELNPAALAHEAAAAGRLGQWDRVSPLVAKATRSPDLRGVAGARLYAALISAASACGKPRRGLEVFEEMLETSSSLSPSXXXXXXXXXXXXXXXXXXXXXRASLASSGDGVEWSDDVRGQGVDDSPSADEGGLARVDGGXXXXXXXXDTATFLAALDACAAVGGDESVSLAVGVTKQAAXXXXXXXXXXXXXXXX--AKARLSSRQLAAVLSKAAEVCAAAGKESTAAALAAKAAQLSG 729
            G G G  ELNP ALAHEAAAAGRLGQWDRVSPL+AKA RSPDLRGVAG RLYAALI+AA+ACGKPRRGLEVF+EM+E S S       XXXXXXXXXXXX       A+ A    GVEWSD + G+       A E   +R    XXXXXXXX   TFLAALDACAAVGG+ESV+LA+GVTK A XXXXXXXXXXXXXXXX   K RLSSRQLAAVLSKA EVCAA GKESTA ALAAKA QL G
Sbjct:  820 GGGGGVRELNPGALAHEAAAAGRLGQWDRVSPLLAKAMRSPDLRGVAGCRLYAALITAAAACGKPRRGLEVFQEMVEESRS------GXXXXXXXXXXXXVDAAVLGAAAAVVSGGVEWSDSMSGEDGTTGEVAMEEAFSRSGXXXXXXXXXXXXXTFLAALDACAAVGGEESVTLAIGVTKDAXXXXXXXXXXXXXXXXXDAKKPRLSSRQLAAVLSKAGEVCAAVGKESTAIALAAKAEQLVG 1058
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9995.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.570e-5571.02protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWM3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9995contigH-canaliculatus_M_contigs9995:1796..2524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FWM3
PFAMsPPR,PPR_2,PPR_3
Model size731
Max annot lvl2759|Eukaryota
KEGG koko:K17710
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.22e-56
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Descriptionendonuclease activity
Cds size729
COG categoryS
BRITEko00000,ko03016,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854239.0557537-CDS-H-canaliculatus_M_contigs9995:1795..25241696854239.0557537-CDS-H-canaliculatus_M_contigs9995:1795..2524Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9995 1796..2524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9995.2.1prot_H-canaliculatus_M_contigs9995.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9995 1796..2524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9995.2.1

>prot_H-canaliculatus_M_contigs9995.2.1 ID=prot_H-canaliculatus_M_contigs9995.2.1|Name=mRNA_H-canaliculatus_M_contigs9995.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=243bp
GHGAGASELNPAALAHEAAAAGRLGQWDRVSPLVAKATRSPDLRGVAGAR
LYAALISAASACGKPRRGLEVFEEMLETSSSLSPSSSGAAADGGGALGAA
AAAAAARASLASSGDGVEWSDDVRGQGVDDSPSADEGGLARVDGGGGRRL
PPPDTATFLAALDACAAVGGDESVSLAVGVTKQAAAAARELQERGGSGNG
GAKARLSSRQLAAVLSKAAEVCAAAGKESTAAALAAKAAQLSG
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mRNA from alignment at H-canaliculatus_M_contigs9995:1796..2524+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9995.2.1 ID=mRNA_H-canaliculatus_M_contigs9995.2.1|Name=mRNA_H-canaliculatus_M_contigs9995.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=729bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9995:1796..2524+ (Hapterophycus canaliculatus Oshoro7m male)
GGCCACGGCGCCGGCGCGAGCGAGCTCAACCCGGCCGCGCTGGCCCACGA
GGCGGCGGCCGCGGGCCGTCTCGGGCAGTGGGACCGGGTGTCGCCGCTGG
TGGCCAAGGCCACGCGGTCCCCGGACCTGAGGGGCGTCGCGGGGGCGCGC
CTGTACGCGGCGCTCATCTCTGCGGCCTCCGCGTGCGGAAAGCCGAGGCG
CGGGCTGGAGGTTTTCGAGGAGATGCTCGAGACCTCGTCCTCTCTGTCGC
CGTCGTCGTCCGGGGCGGCTGCCGATGGCGGGGGGGCGTTGGGGGCGGCG
GCGGCGGCGGCGGCGGCGCGAGCTTCGCTGGCGTCGTCGGGGGACGGTGT
GGAGTGGAGCGACGACGTGCGGGGGCAAGGGGTTGACGACAGCCCCAGTG
CCGACGAAGGAGGCCTCGCCAGAGTAGACGGGGGCGGGGGGCGCAGGCTC
CCGCCCCCGGACACGGCGACCTTCCTGGCGGCCTTGGATGCCTGTGCCGC
CGTTGGCGGGGACGAGTCGGTGTCGCTTGCCGTAGGTGTTACGAAGCAGG
CTGCGGCCGCCGCGAGGGAGCTCCAAGAACGAGGCGGTAGCGGAAACGGG
GGTGCTAAGGCGAGGCTCTCGAGCCGGCAGCTCGCGGCGGTGCTTTCGAA
GGCCGCGGAGGTGTGCGCCGCGGCGGGTAAGGAGTCGACGGCGGCAGCCT
TGGCCGCGAAAGCGGCGCAGCTTAGCGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9995:1796..2524+

>mRNA_H-canaliculatus_M_contigs9995.2.1 ID=mRNA_H-canaliculatus_M_contigs9995.2.1|Name=mRNA_H-canaliculatus_M_contigs9995.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=729bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9995:1796..2524+ (Hapterophycus canaliculatus Oshoro7m male)
GGCCACGGCGCCGGCGCGAGCGAGCTCAACCCGGCCGCGCTGGCCCACGA
GGCGGCGGCCGCGGGCCGTCTCGGGCAGTGGGACCGGGTGTCGCCGCTGG
TGGCCAAGGCCACGCGGTCCCCGGACCTGAGGGGCGTCGCGGGGGCGCGC
CTGTACGCGGCGCTCATCTCTGCGGCCTCCGCGTGCGGAAAGCCGAGGCG
CGGGCTGGAGGTTTTCGAGGAGATGCTCGAGACCTCGTCCTCTCTGTCGC
CGTCGTCGTCCGGGGCGGCTGCCGATGGCGGGGGGGCGTTGGGGGCGGCG
GCGGCGGCGGCGGCGGCGCGAGCTTCGCTGGCGTCGTCGGGGGACGGTGT
GGAGTGGAGCGACGACGTGCGGGGGCAAGGGGTTGACGACAGCCCCAGTG
CCGACGAAGGAGGCCTCGCCAGAGTAGACGGGGGCGGGGGGCGCAGGCTC
CCGCCCCCGGACACGGCGACCTTCCTGGCGGCCTTGGATGCCTGTGCCGC
CGTTGGCGGGGACGAGTCGGTGTCGCTTGCCGTAGGTGTTACGAAGCAGG
CTGCGGCCGCCGCGAGGGAGCTCCAAGAACGAGGCGGTAGCGGAAACGGG
GGTGCTAAGGCGAGGCTCTCGAGCCGGCAGCTCGCGGCGGTGCTTTCGAA
GGCCGCGGAGGTGTGCGCCGCGGCGGGTAAGGAGTCGACGGCGGCAGCCT
TGGCCGCGAAAGCGGCGCAGCTTAGCGGG
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