mRNA_H-canaliculatus_M_contigs9964.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs9964.1.1 vs.
Match: PseudoU_synth_2 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN60_9PHAE) HSP 1 Score: 427 bits (1097), Expect = 5.820e-149 Identity = 206/232 (88.79%), Postives = 218/232 (93.97%), Query Frame = 1
Query: 10 GKGNDVPTEEIWLNGPFKAPMPPGPLDILFMDSDIVVANKPSNLLCVPGRDEKDSLATRAALHLGHYRVDRMIVHRLDMATSGCVIMARTEAALKDLNRQFREREVRKRYVAMVHGVLPADEGEVDLPLCRNSGSPPLHMVNFEHGKPSLTKWRVLERAADKTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTKESLVLADRCLLHAHTLCVRHPITGERTIFTAPCEF 705
GKG V EE+WLNGPF AP+PPGPLDILF+D +IVV NKPS+LLCVPGR EKDSLATRAAL LGHYRVDRMIVHRLDMATSGCVIMART+AALKDLNRQFRER+VRKRYVAMVHGVL ADEGEVDLPLCRN G PPLHMVNFEHGKPSLTKWRVLERAAD+TRVELIPVSGRSHQLRLHM+AIGHPILGDHFYGTK+SL LADRCLLHAHTLC+RHP TGERT+FTAPCEF
Sbjct: 99 GKGKGVAAEEMWLNGPFNAPVPPGPLDILFVDEEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLWADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLDLADRCLLHAHTLCLRHPKTGERTMFTAPCEF 330
BLAST of mRNA_H-canaliculatus_M_contigs9964.1.1 vs.
Match: Pseudouridylate (synthases, 23S RNA-specific n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR37_ECTSI) HSP 1 Score: 420 bits (1080), Expect = 1.620e-147 Identity = 202/235 (85.96%), Postives = 218/235 (92.77%), Query Frame = 1
Query: 1 DARGKGNDVPTEEIWLNGPFKAPMPPGPLDILFMDSDIVVANKPSNLLCVPGRDEKDSLATRAALHLGHYRVDRMIVHRLDMATSGCVIMARTEAALKDLNRQFREREVRKRYVAMVHGVLPADEGEVDLPLCRNSGSPPLHMVNFEHGKPSLTKWRVLERAADKTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTKESLVLADRCLLHAHTLCVRHPITGERTIFTAPCEF 705
+A GKG V EE+WLNGPF AP+PPGPL+ILF+D +IVV NKPS+LLCVPGR EKDSLATRAAL LGHYRVDRMIVHRLDMATSGCVIMART+AALKDLNRQFRER+VRKRYVA+VHGVL ADEGEVDLPLCRN G PPLHMVNFEHGKPSLTKWRVL+RAAD+TRVELIPVSGRSHQLRLHM+AIGHPILGDHFYGT +SL LA RCLLHAHTLC+RHP TGERT+FTAPCEF
Sbjct: 22 EAGGKGKGVAAEEMWLNGPFNAPVPPGPLEILFVDEEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAIVHGVLWADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTTDSLALAGRCLLHAHTLCLRHPKTGERTMFTAPCEF 256
BLAST of mRNA_H-canaliculatus_M_contigs9964.1.1 vs.
Match: Pseudouridylate (synthase, 23S RNA-specific n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD05_9STRA) HSP 1 Score: 214 bits (544), Expect = 1.870e-66 Identity = 111/214 (51.87%), Postives = 138/214 (64.49%), Query Frame = 1
Query: 79 GPLDILFMDSDIVVANKPSNLLCVPGRDEKDSLATRAALHLGHYRVDRMIVHRLDMATSGCVIMARTEAALKDLNRQFREREVRKRYVAMVHGVLPADEGEVDLPLCRNSGSPPLHMVNFEHGKPSLTKWRVLER-----AADKTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTKESLVLADRCLLHAHTLCVRHPITGERTIFTAPCEF 705
GP+D+++ D I+V NKPS LL VPG KD L +R A+ G R+D+M+VHRLD ATSG V+ ART+ AL+ L+ FR R V K Y A+V+G + D GEV P+ ++ +PPL +++ GKP T W VL R AD TRV L PV+GRSHQLRLHM +GHPILGD Y + LA RCLLHA TL RHP TGE F P EF
Sbjct: 14 GPVDVVYSDDHIIVCNKPSGLLSVPGITLKDCLVSRVAVKFGQARIDKMVVHRLDQATSGLVLFARTDEALRALHEDFRLRRVSKCYEAVVYGSVAGDSGEVTEPMRKDMDNPPLQLIDHVQGKPCQTLWSVLSRETRGGGADATRVALTPVTGRSHQLRLHMQVLGHPILGDDLYAHAAARALAPRCLLHARTLRFRHPATGEDLSFEVPPEF 227
BLAST of mRNA_H-canaliculatus_M_contigs9964.1.1 vs.
Match: bifunctional (tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA n=1 Tax=Marinobacter nauticus TaxID=2743 RepID=UPI001C984345) HSP 1 Score: 205 bits (522), Expect = 3.100e-63 Identity = 114/218 (52.29%), Postives = 145/218 (66.51%), Query Frame = 1
Query: 58 FKAPMPPGPLDILFMDSDIVVANKPSNLLCVPGRD--EKDSLATRAALHLGHYRVDRMIVHRLDMATSGCVIMARTEAALKDLNRQFREREVRKRYVAMVHGVLPADEGEVDLPLCRNSGSPPLHMVNFEHGKPSLTKWRVLERAADKTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTKESLVLADRCLLHAHTLCVRHPITGERTIFTAPCEF 705
++ P+ P L +L+ D DIVV +KPS LL VPGRD +DS+ R G VHRLDMATSG +++A + A ++L RQFRERE K YVA V G L EGEVDLPL + + P MV FE+GKPSLT++RV+ + VEL P++GRSHQLR+HM A+GHPILGD FY +E+L +DR LLHAHTLC++ P +GE FTAP F
Sbjct: 6 YQPPLEPF-LTVLYEDKDIVVVDKPSGLLSVPGRDPAHRDSIYARVEQRYGKV----YDVHRLDMATSGVMVLALRKNAERELKRQFRERETSKSYVARVWGHLAQPEGEVDLPLICDWPNRPKQMVCFENGKPSLTQYRVMSEDERSSLVELTPITGRSHQLRVHMLALGHPILGDSFYAHEEALAASDRLLLHAHTLCIKQPYSGEPLSFTAPVPF 218
BLAST of mRNA_H-canaliculatus_M_contigs9964.1.1 vs.
Match: RluA (family pseudouridine synthase n=1 Tax=Kordiimonas gwangyangensis TaxID=288022 RepID=UPI000371F359) HSP 1 Score: 205 bits (522), Expect = 3.200e-63 Identity = 112/210 (53.33%), Postives = 141/210 (67.14%), Query Frame = 1
Query: 82 PLDILFMDSDIVVANKPSNLLCVPGRDEK--DSLATRAALHLGHYRVDRMIVHRLDMATSGCVIMARTEAALKDLNRQFREREVRKRYVAMVHGVLPADEGEVDLPLCRNSGSPPLHMVNFEHGKPSLTKWRVLERAADKTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTKESLVLADRCLLHAHTLCVRHPITGERTIFTAPCEF 705
PLDI+ +D DI+V NKP+ LL VPGR E+ D LATRA R IVHRLDM TSG +IMAR AL+ L RQF +R+ K Y A+++G L DEGEVDLPL + + P H V+FE+GKP+ T+++V+ER TRV L PV+GRSHQLR+HM ++GH I+GD+ Y E+ LADR LHA L V HP +GE FTAP F
Sbjct: 15 PLDIIHVDDDILVLNKPNGLLSVPGRTEEKFDCLATRAEAEFTGVR----IVHRLDMETSGVIIMARHMDALRHLGRQFEDRKTDKVYEALIYGNLARDEGEVDLPLLVDWPNRPKHRVDFENGKPAFTRYKVIERTEKTTRVALYPVTGRSHQLRVHMLSLGHAIIGDNLYAEGEAFTLADRLCLHARELTVTHPESGESLTFTAPVPF 220
BLAST of mRNA_H-canaliculatus_M_contigs9964.1.1 vs.
Match: Pseudouridine (synthase n=1 Tax=Motiliproteus coralliicola TaxID=2283196 RepID=A0A369WRJ6_9GAMM) HSP 1 Score: 203 bits (516), Expect = 1.660e-62 Identity = 104/209 (49.76%), Postives = 146/209 (69.86%), Query Frame = 1
Query: 85 LDILFMDSDIVVANKPSNLLCVPGR--DEKDSLATRAALHLGHYRVDRMIVHRLDMATSGCVIMARTEAALKDLNRQFREREVRKRYVAMVHGVLPADEGEVDLPLCRNSGSPPLHMVNFEHGKPSLTKWRVLERAADKTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTKESLVLADRCLLHAHTLCVRHPITGERTIFTAPCEF 705
+++L+ D +V+A KP++LL VPGR + +D L R R IVHRLD ATSG +++A + ++L+RQF +RE RKRY+A+V G L +G V+LPL + + P MV+ + GKP+LT++R+L++A D++RVELIP++GRSHQLR+HM A+GHPILGD FY T +L ADR LHA L +RHP++GER FTAPC F
Sbjct: 2 IEVLYQDDSLVIAVKPADLLSVPGRGPENQDCLLHRLQSEFPTAR----IVHRLDCATSGVMVLALDADSHRELSRQFHDRETRKRYIAVVDGTLKQHQGRVELPLRCDWPNRPKQMVDHDQGKPALTEYRLLDQADDRSRVELIPITGRSHQLRVHMQALGHPILGDRFYATPSALAKADRLNLHAEQLGIRHPVSGERMEFTAPCPF 206
BLAST of mRNA_H-canaliculatus_M_contigs9964.1.1 vs.
Match: Pseudouridine (synthase n=4 Tax=Zobellella denitrificans TaxID=347534 RepID=A0A291HLR0_9GAMM) HSP 1 Score: 203 bits (517), Expect = 2.010e-62 Identity = 110/223 (49.33%), Postives = 146/223 (65.47%), Query Frame = 1
Query: 58 FKAPMPPGPLDILFMDSDIVVANKPSNLLCVPGRD--EKDSLATRAALHLGHYRVDRM-----IVHRLDMATSGCVIMARTEAALKDLNRQFREREVRKRYVAMVHGVLPADEGEVDLPLCRNSGSPPLHMVNFEHGKPSLTKWRVLERAADKTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTKESLVLADRCLLHAHTLCVRHPITGERTIFTAPCEF 705
+ PM P ++L+ D+ ++V NKPS LL VPGR+ +DSL+ YRV R+ +VHRLDMATSG ++MA A ++L+RQFRERE KRY A VHG L D G +DLPLC + + P HMV+ EHGKP+LT WR L R D++ VEL P++GRSHQLR+HM ++GHPILGD+ Y + E+L +A LHA L RHP + + F+AP F
Sbjct: 6 YDPPMDPQ-FEVLYQDNSLIVLNKPSGLLSVPGRELIHRDSLS---------YRVARVYPGVQVVHRLDMATSGVIVMALHPKAHRELSRQFRERETAKRYYAWVHGRLEQDAGSIDLPLCCDWPNRPRHMVSLEHGKPALTHWRCLRREPDRSLVELTPITGRSHQLRVHMLSLGHPILGDNLYASGEALAMAPHLQLHAAWLAFRHPRSKQWLEFSAPAPF 218
BLAST of mRNA_H-canaliculatus_M_contigs9964.1.1 vs.
Match: Pseudouridine (synthase n=4 Tax=Oceanimonas TaxID=129577 RepID=A0A233RBH1_9GAMM) HSP 1 Score: 199 bits (506), Expect = 8.710e-61 Identity = 107/208 (51.44%), Postives = 134/208 (64.42%), Query Frame = 1
Query: 88 DILFMDSDIVVANKPSNLLCVPGRDEK--DSLATRAALHLGHYRVDRMIVHRLDMATSGCVIMARTEAALKDLNRQFREREVRKRYVAMVHGVLPADEGEVDLPLCRNSGSPPLHMVNFEHGKPSLTKWRVLERAADKTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTKESLVLADRCLLHAHTLCVRHPITGERTIFTAPCEF 705
DIL+ D ++V NKPS LL VPGRD DSL+ R + +V VHRLDMATSG ++MA A ++L+RQFRERE KRY A VHG DEG +DLPLC + + P HMV+ EHGK +LT WR L R ++ +EL P++GRSHQLR+HM ++GHPILGD+ Y E+L +A LHA L RHP R FTAP F
Sbjct: 15 DILYQDDSLIVLNKPSGLLSVPGRDPVHFDSLSLRVSRVFPAVQV----VHRLDMATSGVIVMALNPKAHRELSRQFRERETEKRYYAWVHGQPSEDEGSIDLPLCCDWPNRPRHMVSHEHGKKALTHWRCLRREGQRSLMELTPITGRSHQLRVHMLSLGHPILGDNLYAEGEALTMAPHLQLHAAWLAFRHPRYKHRLEFTAPAPF 218
BLAST of mRNA_H-canaliculatus_M_contigs9964.1.1 vs.
Match: Pseudouridine (synthase n=1 Tax=Zobellella taiwanensis TaxID=347535 RepID=A0A2P7QL36_9GAMM) HSP 1 Score: 199 bits (505), Expect = 1.310e-60 Identity = 105/208 (50.48%), Postives = 138/208 (66.35%), Query Frame = 1
Query: 88 DILFMDSDIVVANKPSNLLCVPGRD--EKDSLATRAALHLGHYRVDRMIVHRLDMATSGCVIMARTEAALKDLNRQFREREVRKRYVAMVHGVLPADEGEVDLPLCRNSGSPPLHMVNFEHGKPSLTKWRVLERAADKTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTKESLVLADRCLLHAHTLCVRHPITGERTIFTAPCEF 705
++L+ D+ ++V NKPS LL VPGR+ +DSL+ R A D +VHRLDMATSG ++MA A ++L+RQFRERE KRY A V+G AD G VDLPLC + + P HMV+ EHGKP+LT WR L R ++ +EL P++GRSHQLR+HM ++GHPILGD+ Y + E+L +A + LHA L RHP FTAP F
Sbjct: 15 EVLYQDNSLIVLNKPSGLLSVPGREAVHRDSLSYRVA----RVYPDVQVVHRLDMATSGVIVMALHPKAHRELSRQFRERETEKRYYAWVYGSPAADAGSVDLPLCCDWPNRPRHMVSLEHGKPALTHWRCLRREPGRSLLELTPITGRSHQLRVHMLSLGHPILGDNLYASGEALTMAPQLQLHAAHLAFRHPRYRHWLEFTAPAPF 218
BLAST of mRNA_H-canaliculatus_M_contigs9964.1.1 vs.
Match: RNA (pseudouridine synthase n=1 Tax=Paremcibacter congregatus TaxID=2043170 RepID=A0A2G4YMN5_9PROT) HSP 1 Score: 198 bits (504), Expect = 1.490e-60 Identity = 105/218 (48.17%), Postives = 138/218 (63.30%), Query Frame = 1
Query: 58 FKAPMPPGPLDILFMDSDIVVANKPSNLLCVPGRDE--KDSLATRAALHLGHYRVDRMIVHRLDMATSGCVIMARTEAALKDLNRQFREREVRKRYVAMVHGVLPADEGEVDLPLCRNSGSPPLHMVNFEHGKPSLTKWRVLERAADKTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTKESLVLADRCLLHAHTLCVRHPITGERTIFTAPCEF 705
F+ P PL +L D DIVV NKPS LL VPGR E KDSL+ R +VHRLDM TSG ++MA A + ++ QF +R K Y+A +HG + +EGE+DLPL + + P HMV+ E+GK +LT+W++L R TRV PV+GR+HQLR+H AIGHPILGD Y T+E+L +ADR LLHA L + HP + E+ F+ P EF
Sbjct: 3 FEYAPPTTPLQVLHQDKDIVVLNKPSGLLSVPGRQEHMKDSLSLRVQAQFP----TATVVHRLDMDTSGIIVMALNIEAHRHISMQFEKRYTEKSYIAHLHGAVADEEGEIDLPLILDWPNRPHHMVDHENGKQALTRWKILARGDGFTRVAFYPVTGRTHQLRVHSQAIGHPILGDTLYATEEALKMADRLLLHAEVLTITHPYSKEKMTFSTPAEF 216 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9964.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs9964.1.1 >prot_H-canaliculatus_M_contigs9964.1.1 ID=prot_H-canaliculatus_M_contigs9964.1.1|Name=mRNA_H-canaliculatus_M_contigs9964.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=236bp DARGKGNDVPTEEIWLNGPFKAPMPPGPLDILFMDSDIVVANKPSNLLCVback to top mRNA from alignment at H-canaliculatus_M_contigs9964:170..2647- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs9964.1.1 ID=mRNA_H-canaliculatus_M_contigs9964.1.1|Name=mRNA_H-canaliculatus_M_contigs9964.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2478bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9964:170..2647- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9964:170..2647- >mRNA_H-canaliculatus_M_contigs9964.1.1 ID=mRNA_H-canaliculatus_M_contigs9964.1.1|Name=mRNA_H-canaliculatus_M_contigs9964.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=708bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9964:170..2647- (Hapterophycus canaliculatus Oshoro7m male)back to top |