mRNA_H-canaliculatus_M_contigs931.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs931.1.1
Unique NamemRNA_H-canaliculatus_M_contigs931.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs931.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 5.970e-19
Identity = 67/169 (39.64%), Postives = 83/169 (49.11%), Query Frame = 1
Query:    1 CLDAFLVALCQTHEDKEDRQRRWYVSTLDLQLVSLEFCIACRSVPSLHVRVVHGAPPTLWAPRRQEPEELREKPR---RTRVPVVRAARLTWRL--------------------RAHT-------------------------SVRKISWPAHLEQLSFGSCFDNSIAG 363
            CLDAF+VAL Q  + +E   +RWYVSTL+LQLVSLE C ACR V +LHVRV    PP+LW P +         P+    +RVPVV+A  LTW L                    RA+T                         +V   SWPA L+QLSFG  F+ +I G
Sbjct:    9 CLDAFVVALNQACDGQE---KRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRSATEVRSGSGCRRANTHSSAASLESAVWPQRLKRMVFESDMTVNTASWPASLQQLSFGCGFNQAIVG 174          
BLAST of mRNA_H-canaliculatus_M_contigs931.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 8.610e-17
Identity = 41/63 (65.08%), Postives = 49/63 (77.78%), Query Frame = 1
Query:    1 CLDAFLVALCQTHEDKEDRQRRWYVSTLDLQLVSLEFCIACRSVPSLHVRVVHGAPPTLWAPR 189
            CLDAF+VAL QT + +E   +RWY STL+LQLVSLEFC ACR VP+LHVRV    P +LW+PR
Sbjct:   41 CLDAFVVALNQTCDGQE---KRWYASTLELQLVSLEFCGACRHVPTLHVRVDRRTPRSLWSPR 100          
BLAST of mRNA_H-canaliculatus_M_contigs931.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.360e-16
Identity = 50/100 (50.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:    7 DAFLVALCQTHEDKEDRQRRWYVSTLDLQLVSLEFCIACRSVPSLHVRVVHGAPPTLWAPRRQE--PEELREKPRR-TRVPVVRAARLTWRLRAHTSVRK 297
            DAF +AL Q  E  E   +RWY ST +LQL SL+ C ACRS P+LHVRV  G P +LW+P   +  P     K R  +RVPVVRA RLTW     T V++
Sbjct:   11 DAFAIALSQACEGGE---KRWYTSTTELQLGSLDICRACRSTPTLHVRVTGGTPTSLWSPPTVQALPNTQSSKVRVVSRVPVVRALRLTWAFSMETLVQR 107          
BLAST of mRNA_H-canaliculatus_M_contigs931.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 3.700e-16
Identity = 49/89 (55.06%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    1 CLDAFLVALCQTHEDKEDRQRRWYVSTLDLQLVSLEFCIACRSVPSLHVRVVHGAPPTLWAPRRQEPEELREKPRRTRVPVVRAARLTW 267
            CLDAF+VAL Q +E  E   +RWY STL LQL SLEFC ACRS P LHV V    PPTLW+  +  P         TRVP V+A  LTW
Sbjct:    9 CLDAFVVALSQCYEGGE---KRWYTSTLQLQLASLEFCGACRSTPMLHVYVDAETPPTLWSLGQANPTAGTS----TRVPAVQAVGLTW 90          
BLAST of mRNA_H-canaliculatus_M_contigs931.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 4.030e-16
Identity = 50/94 (53.19%), Postives = 61/94 (64.89%), Query Frame = 1
Query:    1 CLDAFLVALCQTHEDKEDRQRRWYVSTLDLQLVSLEFCIACRSVPSLHVRVVHGAPPTLWAPRRQEP---EELREKPRRTRVPVVRAARLTWRL 273
            CL AF+VAL QT   +E   +RWY STL+LQLVSLEFC ACR VP+LHVRV    P +LW+P +      +  RE     RVP V+A+ LTW L
Sbjct:   17 CLRAFIVALNQTCNGQE---KRWYASTLELQLVSLEFCGACRRVPTLHVRVDRQTPRSLWSPCKSHATTKKRSREACVSNRVPAVQASGLTWAL 107          
BLAST of mRNA_H-canaliculatus_M_contigs931.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K9_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 5.560e-15
Identity = 62/169 (36.69%), Postives = 79/169 (46.75%), Query Frame = 1
Query:    1 CLDAFLVALCQTHEDKEDRQRRWYVSTLDLQLVSLEFCIACRSVPSLHVRVVHGAPPTLWAPRRQE---PEELREKPRRTRVPVVRAARLTWRL-------RAHT--------------------------------------SVRKISWPAHLEQLSFGSCFDNSIAG 363
            CLDAF+VAL Q  +    R +RWYVSTL+LQLVSLEFC ACRS  S  V++    P +LW+PR+      +  RE    +RVP V+A    W L       R+ T                                      SV  +SWPA L++LSFG  F+  I G
Sbjct:   29 CLDAFIVALKQAGDG---RAKRWYVSTLELQLVSLEFCGACRSALSFDVQIHRQTPHSLWSPRKSHGTLKKRSREACIPSRVPAVQANGWMWALPMEILLPRSATELHQVSENRQPTGPSSATSPGRMGWFQKLTRLMFYSERSVNSVSWPACLQELSFGDFFNQPIIG 194          
BLAST of mRNA_H-canaliculatus_M_contigs931.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 3.600e-14
Identity = 55/125 (44.00%), Postives = 67/125 (53.60%), Query Frame = 1
Query:    1 CLDAFLVALCQTHEDKEDRQRRWYVSTLDLQLVSLEFCIACRSVPSLHVRVVHGAPPTLWAPRRQEPEELREKPRR------TRVPVVRAARLTWRLRAHTSVRKIS-----WPAHLEQLSFGSC 342
            CLDAF++AL Q  E  E   +RWY STL+LQL SL+ C ACR+   LHV V    P +LW+ R  +    R   R       +RVPVVRA RLTW L     +RK +     W   LE L   SC
Sbjct:   11 CLDAFVIALSQACEGGE---KRWYASTLELQLTSLDLCRACRTTSILHVHVDDQTPRSLWSSRTAQ---TRPNTRSWNLHISSRVPVVRALRLTWALSMEALLRKAAIELWTWSERLELLG-SSC 128          
BLAST of mRNA_H-canaliculatus_M_contigs931.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G0_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 5.660e-13
Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 1
Query:    1 CLDAFLVALCQTHEDKEDRQRRWYVSTLDLQLVSLEFCIACRSVPSLHVRVVHGAPPTLWAPRRQEP 201
            CLDAF+VAL QT + +E+R   WY STL+LQLVSL+FC ACR  P+LHVRV    P      RR++P
Sbjct:    9 CLDAFIVALNQTCDGRENR---WYASTLELQLVSLKFCGACRRFPTLHVRVDRQTPRKKPTCRRRKP 72          
BLAST of mRNA_H-canaliculatus_M_contigs931.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA08_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 8.890e-13
Identity = 51/122 (41.80%), Postives = 66/122 (54.10%), Query Frame = 1
Query:    1 CLDAFLVALCQTHEDKEDRQRRWYVSTLDLQLVSLEFCIACRSVPSLHVRVVHGAPPTLWAPRRQEPEELREKPRR-TRVPVVRAARLTWRLRAHTSVRKISWPAHLEQLSF--GSCFDNSI 357
            CLDA ++AL Q    +      WY ST+ LQL SLE C ACRS+  L + V HG PP LW       E    K R  TRVPVVRA  +TW+L    ++R ++  A  E  +F  G  FD+ +
Sbjct:   43 CLDALIIALNQASGGE------WYTSTMQLQLTSLELCAACRSMHLLKLNVQHGTPPRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPG-VALRNMTGDAWSEVTTFSLGPGFDDDL 157          
BLAST of mRNA_H-canaliculatus_M_contigs931.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 1.400e-12
Identity = 45/93 (48.39%), Postives = 53/93 (56.99%), Query Frame = 1
Query:    4 LDAFLVALCQTHEDKEDRQRRWYVSTLDLQLVSLEFCIACRSVPSLHVRVVHGAPPTLWAPRRQEPEELREKPR---RTRVPVVRAARLTWRL 273
            LD  +VAL Q  + +E   +RWYVSTL+LQLVSLE C ACRS   LHV V    PPTLW+ R       +  P      RVP V+A   TW L
Sbjct:   90 LDTLIVALNQACDGQE---KRWYVSTLELQLVSLELCGACRSAQLLHVFVREDTPPTLWSSRTSRTTPSQRSPEVCTSNRVPAVQALCWTWAL 179          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs931.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized5.970e-1939.64protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized8.610e-1765.08protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.360e-1650.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.700e-1655.06protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.030e-1653.19protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.560e-1536.69protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.600e-1444.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.660e-1356.72protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.890e-1341.80protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.400e-1248.39protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs931contigH-canaliculatus_M_contigs931:4718..5509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Model size597
Hectar predicted targeting categoryother localisation
Exons3
Cds size597
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854201.2855897-CDS-H-canaliculatus_M_contigs931:4717..49471696854201.2855897-CDS-H-canaliculatus_M_contigs931:4717..4947Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs931 4718..4947 +
1696854201.3015244-CDS-H-canaliculatus_M_contigs931:5001..50531696854201.3015244-CDS-H-canaliculatus_M_contigs931:5001..5053Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs931 5002..5053 +
1696854201.3246288-CDS-H-canaliculatus_M_contigs931:5194..55091696854201.3246288-CDS-H-canaliculatus_M_contigs931:5194..5509Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs931 5195..5509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs931.1.1prot_H-canaliculatus_M_contigs931.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs931 4718..5509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs931.1.1

>prot_H-canaliculatus_M_contigs931.1.1 ID=prot_H-canaliculatus_M_contigs931.1.1|Name=mRNA_H-canaliculatus_M_contigs931.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=199bp
CLDAFLVALCQTHEDKEDRQRRWYVSTLDLQLVSLEFCIACRSVPSLHVR
VVHGAPPTLWAPRRQEPEELREKPRRTRVPVVRAARLTWRLRAHTSVRKI
SWPAHLEQLSFGSCFDNSIAGVAWPASLQHISFGYAFNQPIAEVLWPPSL
QQMSFGQYFNQPLVEVEWPASLQQLSLGNAFNQPITGVAWPPSLQQLSF
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mRNA from alignment at H-canaliculatus_M_contigs931:4718..5509+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs931.1.1 ID=mRNA_H-canaliculatus_M_contigs931.1.1|Name=mRNA_H-canaliculatus_M_contigs931.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=792bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs931:4718..5509+ (Hapterophycus canaliculatus Oshoro7m male)
TGCCTGGACGCCTTCCTCGTAGCCCTGTGCCAAACACACGAGGACAAGGA GGACAGGCAAAGACGTTGGTATGTGTCGACACTCGATCTTCAGCTGGTGT CGTTGGAGTTCTGTATAGCATGCCGGAGCGTCCCCTCCTTGCACGTCCGT GTCGTCCACGGAGCCCCTCCGACATTGTGGGCTCCTCGAAGGCAGGAGCC CGAGGAGCTCCGGGAAAAGCCTCGGCGGACGTCATCGCGGAGTCGAACAC GCAGCTGCTTTTTGACGGCTTTACTCACCCCAAGCCGCGTTCCTGTGGTG CGGGCGGCCCGTTTGACATGGAGGCTTAGGGCGCACGTTTTGGTGGAAAG CGGTGCAATGGAACAGTGGAAAGACCTGGAGAGTCTGCGGTTGGAAGGGA CAGGCCGTTTAGCAGGGCTGGAGTCGGTGGCTTGGCCACCACGGCTAAAG CTGCTGGTGTTAGACACCAGATTGGAGACGTCCGTGAGGAAGATTTCGTG GCCCGCCCATCTAGAACAGCTTTCTTTCGGGTCTTGTTTCGACAATTCCA TCGCCGGAGTCGCGTGGCCGGCGTCCCTTCAACATATTTCGTTCGGCTAT GCCTTCAATCAGCCCATCGCCGAAGTTCTGTGGCCGCCCTCCTTGCAGCA AATGTCATTCGGGCAATATTTCAACCAGCCTTTGGTCGAAGTCGAGTGGC CGGCCTCCTTGCAACAGCTTTCGTTAGGGAATGCCTTCAACCAACCCATC ACCGGAGTCGCGTGGCCACCCTCCCTGCAACAATTATCGTTC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs931:4718..5509+

>mRNA_H-canaliculatus_M_contigs931.1.1 ID=mRNA_H-canaliculatus_M_contigs931.1.1|Name=mRNA_H-canaliculatus_M_contigs931.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=597bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs931:4718..5509+ (Hapterophycus canaliculatus Oshoro7m male)
TGCCTGGACGCCTTCCTCGTAGCCCTGTGCCAAACACACGAGGACAAGGA
GGACAGGCAAAGACGTTGGTATGTGTCGACACTCGATCTTCAGCTGGTGT
CGTTGGAGTTCTGTATAGCATGCCGGAGCGTCCCCTCCTTGCACGTCCGT
GTCGTCCACGGAGCCCCTCCGACATTGTGGGCTCCTCGAAGGCAGGAGCC
CGAGGAGCTCCGGGAAAAGCCTCGGCGGACCCGCGTTCCTGTGGTGCGGG
CGGCCCGTTTGACATGGAGGCTTAGGGCGCACACGTCCGTGAGGAAGATT
TCGTGGCCCGCCCATCTAGAACAGCTTTCTTTCGGGTCTTGTTTCGACAA
TTCCATCGCCGGAGTCGCGTGGCCGGCGTCCCTTCAACATATTTCGTTCG
GCTATGCCTTCAATCAGCCCATCGCCGAAGTTCTGTGGCCGCCCTCCTTG
CAGCAAATGTCATTCGGGCAATATTTCAACCAGCCTTTGGTCGAAGTCGA
GTGGCCGGCCTCCTTGCAACAGCTTTCGTTAGGGAATGCCTTCAACCAAC
CCATCACCGGAGTCGCGTGGCCACCCTCCCTGCAACAATTATCGTTC
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