mRNA_H-canaliculatus_M_contigs9049.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9049.1.1
Unique NamemRNA_H-canaliculatus_M_contigs9049.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs9049.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD91_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.370e-6
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:  403 LLSPAEPPPERRSLRAVPIKKIPFRSSSSA---PGQAAR----DDPRRLLGNYGEAFAEDTLSCSSG 582
            LLSPAEP P+ R+ RA  +K+IPF +   A   PG++      DDPRRLLGNYGEAFAE    C  G
Sbjct:  154 LLSPAEPLPQPRAPRAPVVKRIPFAAPPVAGVPPGRSKHRRRDDDPRRLLGNYGEAFAEVAEGCGLG 220
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9049.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.370e-653.73protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9049contigH-canaliculatus_M_contigs9049:1255..3187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1500
Hectar predicted targeting categoryother localisation
Exons2
Cds size1500
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854186.5457451-CDS-H-canaliculatus_M_contigs9049:1254..27211696854186.5457451-CDS-H-canaliculatus_M_contigs9049:1254..2721Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9049 1255..2721 -
1696854186.5610073-CDS-H-canaliculatus_M_contigs9049:3154..31871696854186.5610073-CDS-H-canaliculatus_M_contigs9049:3154..3187Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9049 3155..3187 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9049.1.1prot_H-canaliculatus_M_contigs9049.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9049 1255..3187 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9049.1.1

>prot_H-canaliculatus_M_contigs9049.1.1 ID=prot_H-canaliculatus_M_contigs9049.1.1|Name=mRNA_H-canaliculatus_M_contigs9049.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=500bp
NGEDLPSFEDEVDDDAALPAGATGLDREPGGRRSTAARAVAGGSCPVSRL
LAGIKDDTDSGSSSGRTNAVVGGANELAPATGAPRQPSSSGPRTLAAAAA
TAATAAAAAAAAPKSSRRAKKKKKREKAKIFDQELLSPAEPPPERRSLRA
VPIKKIPFRSSSSAPGQAARDDPRRLLGNYGEAFAEDTLSCSSGDEEEAE
EQEEEEEEEEDDDDDDDAPPSQEMALVSSSSGSLGFRIPSGVGSGPSTVY
GFSGGGGGGRVGARVSRIVGLTRMVSVDGDCGGGSGSSGAPPPFGGAAFG
SVPMTARPGQGDHAAVATPVAMPVAAPSLVTRGSSSNSVGSGEAGEAAVP
FTSSPAAVSASAAAAGPPAPSLPPPPSTFYQLAADDAVAAFARIPSMSTA
TPHAPQVYNPSSTPGAAAGTKEKLGLPDHRPHHPHHPEDCREDGHQRSSS
SVDAALAALSVAGSSRSSGCSTATLSLDSSVSSSPPRASPTKTPAGGPPA
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mRNA from alignment at H-canaliculatus_M_contigs9049:1255..3187-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9049.1.1 ID=mRNA_H-canaliculatus_M_contigs9049.1.1|Name=mRNA_H-canaliculatus_M_contigs9049.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1933bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9049:1255..3187- (Hapterophycus canaliculatus Oshoro7m male)
AACGGCGAAGATCTCCCAAGCTTCGAGGACGAGGTGAGTCTCTCGTTTAA
CCTGCCGCTGCTACTGCTACCGCTGCCTGGAGCGCGACACCGTTGATCTT
CTCCAACCTCGGCTCTGCCCCTGCTCGCTGACTCTTTCTCTTGAGTTTCG
TGTTCCTCTCTGGTTGTGCGAGGGGCGGACGGATCGAACGCCACCGTTGC
GCAGACGAATCCTGCATTGGAGTGCGGAGCGAGGATCTCAGTTCGACCCC
ATCATCGCGCAAAGGGGTCCAAGTGCGTAGGCGCGGACGTTTGCGTCGGT
TCCCGTCAGCGCTCGATAGCTTTCAGACAAAACACATCGAACATGATATC
AGCCACGACGTTCCTTGGGCCACAATGAAGGAAACATGAGCAACCTCAAA
AATTCCGTCTGTTGCTTCTACAAGCGCACTGCTGCTTTATGCACACGCTC
TCTGATTGACGCACAGGTGGATGACGACGCAGCGCTCCCGGCCGGTGCGA
CCGGCCTAGACAGGGAACCTGGCGGGCGGCGATCGACAGCTGCGAGGGCT
GTGGCGGGCGGCTCGTGTCCTGTCTCTCGATTGCTCGCTGGGATCAAAGA
CGACACGGACAGCGGCAGCAGCAGTGGCCGAACCAATGCTGTGGTTGGTG
GCGCCAACGAACTTGCGCCGGCCACTGGCGCACCGAGACAACCATCTTCG
TCTGGACCCAGGACGCTGGCAGCGGCAGCAGCAACGGCAGCAACGGCAGC
AGCAGCAGCAGCGGCGGCGCCGAAGAGCAGCAGGAGGGCCAAGAAGAAGA
AGAAGAGGGAGAAAGCGAAGATCTTCGACCAAGAGCTTCTATCTCCCGCC
GAACCCCCGCCGGAGAGGAGGTCCCTTCGCGCCGTCCCGATCAAGAAGAT
CCCTTTTCGATCCAGCTCGTCCGCCCCGGGCCAGGCGGCCAGGGACGACC
CCCGGCGTCTACTGGGCAACTACGGCGAGGCCTTCGCGGAGGACACGCTT
TCGTGCAGCAGCGGAGACGAGGAGGAGGCGGAGGAGCAGGAGGAGGAGGA
GGAGGAGGAGGAGGACGACGACGACGACGACGACGCGCCGCCGTCGCAGG
AAATGGCGTTGGTGTCATCCTCGTCGGGTAGCCTCGGTTTCAGGATACCA
AGCGGGGTTGGTTCAGGCCCATCGACGGTCTACGGATTTTCTGGAGGGGG
CGGAGGAGGGAGGGTGGGGGCGAGGGTCAGCAGGATCGTAGGTCTAACGA
GGATGGTGTCGGTTGATGGGGATTGTGGTGGCGGAAGTGGCAGCAGCGGC
GCCCCGCCCCCCTTCGGTGGTGCTGCTTTCGGGTCCGTGCCGATGACAGC
CCGGCCGGGACAGGGAGACCATGCGGCGGTGGCCACGCCGGTGGCCATGC
CGGTGGCGGCACCCAGCCTGGTCACGCGGGGCAGTAGCAGCAACAGCGTG
GGCTCTGGCGAAGCTGGAGAGGCCGCTGTTCCCTTCACGAGCTCCCCGGC
CGCCGTGTCTGCTTCGGCCGCCGCCGCCGGCCCCCCGGCGCCGTCACTCC
CGCCGCCGCCATCAACCTTCTACCAGCTCGCTGCTGATGACGCCGTTGCG
GCATTCGCCCGAATCCCTTCTATGAGCACGGCGACACCACACGCCCCTCA
AGTTTACAACCCTAGCAGCACCCCTGGAGCTGCTGCAGGAACCAAGGAAA
AGCTAGGGCTGCCGGACCACCGCCCCCACCACCCCCACCACCCAGAGGAC
TGCCGCGAAGACGGGCACCAGCGCTCGTCCTCGTCGGTGGACGCTGCGCT
CGCAGCTCTATCGGTTGCGGGATCATCTCGTAGCAGCGGCTGCTCCACCG
CCACCCTGTCCTTGGACTCGTCTGTGTCCTCTTCTCCTCCTCGGGCGTCC
CCGACCAAGACCCCCGCGGGGGGCCCGCCGGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9049:1255..3187-

>mRNA_H-canaliculatus_M_contigs9049.1.1 ID=mRNA_H-canaliculatus_M_contigs9049.1.1|Name=mRNA_H-canaliculatus_M_contigs9049.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1500bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9049:1255..3187- (Hapterophycus canaliculatus Oshoro7m male)
AACGGCGAAGATCTCCCAAGCTTCGAGGACGAGGTGGATGACGACGCAGC
GCTCCCGGCCGGTGCGACCGGCCTAGACAGGGAACCTGGCGGGCGGCGAT
CGACAGCTGCGAGGGCTGTGGCGGGCGGCTCGTGTCCTGTCTCTCGATTG
CTCGCTGGGATCAAAGACGACACGGACAGCGGCAGCAGCAGTGGCCGAAC
CAATGCTGTGGTTGGTGGCGCCAACGAACTTGCGCCGGCCACTGGCGCAC
CGAGACAACCATCTTCGTCTGGACCCAGGACGCTGGCAGCGGCAGCAGCA
ACGGCAGCAACGGCAGCAGCAGCAGCAGCGGCGGCGCCGAAGAGCAGCAG
GAGGGCCAAGAAGAAGAAGAAGAGGGAGAAAGCGAAGATCTTCGACCAAG
AGCTTCTATCTCCCGCCGAACCCCCGCCGGAGAGGAGGTCCCTTCGCGCC
GTCCCGATCAAGAAGATCCCTTTTCGATCCAGCTCGTCCGCCCCGGGCCA
GGCGGCCAGGGACGACCCCCGGCGTCTACTGGGCAACTACGGCGAGGCCT
TCGCGGAGGACACGCTTTCGTGCAGCAGCGGAGACGAGGAGGAGGCGGAG
GAGCAGGAGGAGGAGGAGGAGGAGGAGGAGGACGACGACGACGACGACGA
CGCGCCGCCGTCGCAGGAAATGGCGTTGGTGTCATCCTCGTCGGGTAGCC
TCGGTTTCAGGATACCAAGCGGGGTTGGTTCAGGCCCATCGACGGTCTAC
GGATTTTCTGGAGGGGGCGGAGGAGGGAGGGTGGGGGCGAGGGTCAGCAG
GATCGTAGGTCTAACGAGGATGGTGTCGGTTGATGGGGATTGTGGTGGCG
GAAGTGGCAGCAGCGGCGCCCCGCCCCCCTTCGGTGGTGCTGCTTTCGGG
TCCGTGCCGATGACAGCCCGGCCGGGACAGGGAGACCATGCGGCGGTGGC
CACGCCGGTGGCCATGCCGGTGGCGGCACCCAGCCTGGTCACGCGGGGCA
GTAGCAGCAACAGCGTGGGCTCTGGCGAAGCTGGAGAGGCCGCTGTTCCC
TTCACGAGCTCCCCGGCCGCCGTGTCTGCTTCGGCCGCCGCCGCCGGCCC
CCCGGCGCCGTCACTCCCGCCGCCGCCATCAACCTTCTACCAGCTCGCTG
CTGATGACGCCGTTGCGGCATTCGCCCGAATCCCTTCTATGAGCACGGCG
ACACCACACGCCCCTCAAGTTTACAACCCTAGCAGCACCCCTGGAGCTGC
TGCAGGAACCAAGGAAAAGCTAGGGCTGCCGGACCACCGCCCCCACCACC
CCCACCACCCAGAGGACTGCCGCGAAGACGGGCACCAGCGCTCGTCCTCG
TCGGTGGACGCTGCGCTCGCAGCTCTATCGGTTGCGGGATCATCTCGTAG
CAGCGGCTGCTCCACCGCCACCCTGTCCTTGGACTCGTCTGTGTCCTCTT
CTCCTCCTCGGGCGTCCCCGACCAAGACCCCCGCGGGGGGCCCGCCGGCG
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