mRNA_H-canaliculatus_M_contigs9010.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9010.1.1
Unique NamemRNA_H-canaliculatus_M_contigs9010.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs9010.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD13_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 5.090e-60
Identity = 207/573 (36.13%), Postives = 263/573 (45.90%), Query Frame = 1 
Query:    1 MDGSCGFDEEGNLEDDENGTDAFEAALQPLPTWDGRPYLITNKGSIEKPIFPIASLFPSTRELEWASSAPYLWPEDQGEIMNNRHADIASRGPDESKTTGNTDPSVLRASTAVCDPNVTLQQPQLQPWAIRRSTSPDPKRLGHLSEAEGALTHVIRLHRTGSVVVERKGSPSTSGDIADEVGIASLGRHSRGPSYYAEEERFWLERCPTGSAAETAVRGEHRDEAVAPSRQSPSMRSGRDTQRTGTEASYDYFTAEAAYRPSTRKSSTPRIASPCSHDSDGAAGKDGRSRRRTRSTHFEEDDGLNATKEKFQQEPRPPQCRALTSDRGARTNGL-ETMTGAAQRRRSRSLRDAENVLHGVLESMAEAAPTNDA--------------STPRERRASVLRQRVEDLLRGEAESPTRAGTTHRHYDEVDRTKPSQGMRGRRYPHDGDDDSDHYDRDTCKPNDQHGQSPRWERTSPLER-SNKEMNR-RGFGVRGVARGADSQTRREC---------------------DAADESAGRVAELGRRIAVRCLHMEQECLRRERAQTRLFQEQLRGAR 1605
            MDGSCG  +  N +D + G DAFEAALQPLP WDG  Y  TN+G+ E  I         TR+ +   SA    PE    ++++      + GPDE+    +   S LR +    DP+  +  P  Q W+  RSTSP+PK  GH  E    LTHVIRLHRTGSVVVERKG P+  G I  + G     +H+     YAEEERFW  RCP  +           D AV   R +P+  S R T+  G  A+YDYF AEAA+      S   +   P  + S    G    + RRT +   E+ D         Q    PP  R       AR   + E     AQRRR +SLRDAE+VL GVLES+ +A  T +                TP+  R SVLRQ V +L R EA       +T +H   +  T PS+  R +         S HYD D             W     + R  N+  +R RG   RG ++  D   +R+C                         ESAGRVAEL RRIA+RC            +QTRLFQEQLR  R
Sbjct:   13 MDGSCGGFQN-NADDSDGGADAFEAALQPLPAWDGLAYS-TNRGNAENDIVW------GTRQSDRDRSAASPSPEHHPGMLDDLDLGAVNVGPDEAGDCTDNVSSTLRTTKLAGDPDG-MHPPIGQAWSETRSTSPEPKPKGHDLETGDNLTHVIRLHRTGSVVVERKGKPNARGGIIGDAGAFGPRQHAAEQYSYAEEERFWQARCPPEA-----------DNAVVVQRTAPTA-SPRVTKANGRAANYDYFAAEAAHLAG---SPAGKSVPPGGNSSLRGRGPGQPTGRRTTTRFEEKADACVQENCATQGTHVPPPRRTARKGCSARAKAITERKRDKAQRRRLQSLRDAESVLRGVLESVEDAPSTGEVCRKTAAEEDSYSTMDTPQGERFSVLRQNVANLFRDEAHEERGESSTGKHGGSMGGTSPSK-YRAQT--------SRHYDGDN------------WPSPLGIRRVGNRSGSRERGAMARGTSQQVDQHEQRQCIEDERAEGLAHSEEXXXXXXGXXXQESAGRVAELSRRIAMRCXXXXXXXXXXXXSQTRLFQEQLRSVR 540
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9010.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized5.090e-6036.13protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9010contigH-canaliculatus_M_contigs9010:588..4161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1605
Hectar predicted targeting categoryother localisation
Exons5
Cds size1605
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854185.2316566-CDS-H-canaliculatus_M_contigs9010:587..7291696854185.2316566-CDS-H-canaliculatus_M_contigs9010:587..729Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9010 588..729 +
1696854185.2459815-CDS-H-canaliculatus_M_contigs9010:1198..14371696854185.2459815-CDS-H-canaliculatus_M_contigs9010:1198..1437Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9010 1199..1437 +
1696854185.2604413-CDS-H-canaliculatus_M_contigs9010:1929..20241696854185.2604413-CDS-H-canaliculatus_M_contigs9010:1929..2024Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9010 1930..2024 +
1696854185.271415-CDS-H-canaliculatus_M_contigs9010:2436..30751696854185.271415-CDS-H-canaliculatus_M_contigs9010:2436..3075Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9010 2437..3075 +
1696854185.2819924-CDS-H-canaliculatus_M_contigs9010:3671..41611696854185.2819924-CDS-H-canaliculatus_M_contigs9010:3671..4161Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9010 3672..4161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9010.1.1prot_H-canaliculatus_M_contigs9010.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9010 588..4161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9010.1.1

>prot_H-canaliculatus_M_contigs9010.1.1 ID=prot_H-canaliculatus_M_contigs9010.1.1|Name=mRNA_H-canaliculatus_M_contigs9010.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=535bp
MDGSCGFDEEGNLEDDENGTDAFEAALQPLPTWDGRPYLITNKGSIEKPI
FPIASLFPSTRELEWASSAPYLWPEDQGEIMNNRHADIASRGPDESKTTG
NTDPSVLRASTAVCDPNVTLQQPQLQPWAIRRSTSPDPKRLGHLSEAEGA
LTHVIRLHRTGSVVVERKGSPSTSGDIADEVGIASLGRHSRGPSYYAEEE
RFWLERCPTGSAAETAVRGEHRDEAVAPSRQSPSMRSGRDTQRTGTEASY
DYFTAEAAYRPSTRKSSTPRIASPCSHDSDGAAGKDGRSRRRTRSTHFEE
DDGLNATKEKFQQEPRPPQCRALTSDRGARTNGLETMTGAAQRRRSRSLR
DAENVLHGVLESMAEAAPTNDASTPRERRASVLRQRVEDLLRGEAESPTR
AGTTHRHYDEVDRTKPSQGMRGRRYPHDGDDDSDHYDRDTCKPNDQHGQS
PRWERTSPLERSNKEMNRRGFGVRGVARGADSQTRRECDAADESAGRVAE
LGRRIAVRCLHMEQECLRRERAQTRLFQEQLRGAR
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mRNA from alignment at H-canaliculatus_M_contigs9010:588..4161+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9010.1.1 ID=mRNA_H-canaliculatus_M_contigs9010.1.1|Name=mRNA_H-canaliculatus_M_contigs9010.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3574bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9010:588..4161+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGATGGGTCTTGTGGCTTCGACGAAGAAGGAAACCTCGAGGACGACGA
AAACGGCACCGACGCCTTCGAGGCCGCACTTCAGCCTTTGCCCACGTGGG
ATGGGAGGCCTTACCTCATCACCAACAAGGGCAGCATCGAAAGTATGAGA
AACGAGAACCTTAGTGCCACGATGCGACGAAGAAGGTGCGAAATTCTAAC
CCTTGGCCACTTCTGAAAGTATTCTGTTGCTTGAGAAAATGCACAGCAAC
ATGTCCTCTTACTTTTCCGGTATTCGGGTCTGAATGGTAGTCGCCGGGCA
GAGCGAACGAGCGCAAGAGCTTGTACGACAGCACACCGACTTGCTCCGTA
TATGAATACGCTGGATCTGTCGGCACCGGGTGTTGGAAGGACACCGTTGA
GCGGCATGAATCCATGCGTAACGTATATTTCGTGTTGAGGGTGTGAGGTT
TATCCTGGAGCATCCATTGTTGTCGTAGATCGCTGTGCTATCCTCGTGGC
CTCACGTTACTATCGGAGAAAAACACGGCGGTGATCTTGTCTCTTTTTCT
GCGCACAGAAACGAGCAGCAAAGCTCGAGACCATTTTTTCTACCTTCGAT
GGCTGAAGAAGAGCCTATCTTTCCGATCGCGTCCCTTTTTCCATCCACTA
GGGAGCTCGAATGGGCCAGCAGCGCGCCCTATTTGTGGCCAGAAGACCAA
GGTGAAATCATGAACAACCGTCACGCGGACATTGCCAGTCGAGGACCAGA
CGAGTCAAAGACTACTGGGAACACTGACCCATCGGTGCTCAGAGCGAGCA
CAGCGGTGTGCGATCCAAATGTGACGTTGCAGCAGCCACAGCTGCAGCCG
GTGAGTGAGGGGGTCCCAAACCGTTTGCCCGCCTTGGCATCCGGCAAGCT
GCGATAGACGGGGTGCTTTGGAAGTAGTTGTTCGGCGCGGAGGACGATAC
GAGGTGTAACAGTGTTCCGGCGTTTGTCAAACGACGAACGTGGCCATTCA
GCGCACCTGCCACTGCTTTGGTTGAGGTTCGCGCTGGAGTTATTTTCAAC
CAAAAAGAAAAAAAAAGGCACGTTCCTGAAACATGTAGCTAGACCCAAGT
CAGAGAGAAACGCTCGACCCGCAACGCCTCTTATCGACCGTTGGGATATT
TTTTTTGTAGATAGCAGCACGAACGCGGGACGCAATATATTTCCCGCACC
CCTTCGAGCGCAGCACCCTGATTCGAACCCAATGGAGATGTCTGCACTGC
TGTCTTCGGCACTGCTCGCATCTTCGATTCGCCGTGTGGCGACGTTTTAA
GATCATCCGTTCAACACTCGTTCCGTGGATTTGACCATGAAGTGGGCCAT
CAGGCGCTCCACATCACCAGATCCGAAACGGCTTGGCCACTTGTCGGAAG
CGGAAGGGGCTCTTACCCATGTCATCAGACTGCACAGGTCAGTTGCCGTC
GCTTACACTGACGAAGAAAAAGGGTTTCCGCAGGCTGAACCACTTCAGTC
CAGGATTTAAAACAATGTCACCGCATGCGCCCGTGACCGTGGCAGTCTTC
AGTGTGGGACTAAAACCACAGCATGATGACGCTTGAGCGGCACATTCCAG
GATGAGGATTGCGTCTGTCGTACTGCTCCGCTTGGTTTGCGATAGATGCA
CCTTTTGGTTGCAGAGTGCGATGCACTGTCTTGAGTAGAAGCCCCTCTGT
GTATACACCGCGTACTGTGCGGTGCTCGTGTGTGCAGCGACTCCTCCATC
GTCAGCCGGGCGCCGATTTCTTGTCCCACCTCGCTTCTCCGTCTTCATGG
CTCTACACGTGGTGACCTGGATAACCCTCGCGCTTCTGCTATGCTGCAGG
ACGGGGAGTGTAGTAGTCGAACGAAAAGGCAGCCCGAGCACGTCTGGAGA
TATCGCGGACGAAGTAGGTATTGCGAGCCTTGGGCGGCACAGCAGAGGGC
CCTCCTACTACGCAGAAGAGGAGCGATTCTGGCTAGAAAGGTGTCCGACC
GGCAGCGCCGCAGAGACTGCTGTGCGCGGGGAACACAGAGATGAAGCCGT
CGCTCCCTCAAGGCAGTCGCCGTCGATGCGATCAGGTCGCGACACCCAAA
GGACGGGGACGGAGGCGAGCTACGACTATTTCACGGCCGAAGCCGCCTAC
CGTCCCTCTACTCGGAAGTCCTCGACGCCTCGTATCGCCAGCCCCTGCTC
GCACGACAGCGATGGGGCCGCGGGGAAAGACGGGCGAAGCAGGCGAAGAA
CACGAAGCACACATTTCGAGGAAGATGACGGCTTGAACGCCACAAAAGAA
AAATTCCAGCAAGAACCGCGACCGCCACAATGCCGAGCGCTCACCAGTGA
TCGTGGCGCGCGGACCAACGGACTTGAGACAATGACGGGTGCGGCCCAGC
GACGGCGATCCCGGTCGCTGCGCGACGCGGAGAACGTTCTGCATGGGGTG
CTGGAGTCGATGGCGGAAGCAGCGCCAACGAATGATGCGTTTGCTAGCGA
AGACGAGGACGTCGATATGAGAGAGCTAGCCGAGGTAGTCGATAGAAGCG
GCTATTGTCGGGCTGATTTACAAGCCGTAACATTGAGCGGCCCATTGGGG
TGTTCCGCGTGGCTCTCGTGCAACCGAGGAGCGCATATGCTAGCTTGTAC
AGGCGAGGCTCCCATTGTTTCGCGAAGGCTGTACATCTTTATTACAGGGT
CCCAGCTTCGAGAATGGGGACTGATGTCAGCGGCTTCAAACGTGGCCTTC
GTACTCCCCTATGGCGCTGACTTTACGATGATTTGGCAGTATGTTTCTTT
GGCGACACAGCACCCAACTAGGCTTGGTCAGCGCTGCTTATACCTTGCGG
CGGAAGCGCCAGTTATCACGCACGTCGCACCAGCGTGGTCGTTCCTTCAA
AACCTGAAAAGCTGCTGAATATTGCCCGTCCATGTCAACCCACAGCCTCC
AACGTTTTTGGAGGGCAGCTCCGAATGACTCCCTCTTCACTGCTTTGTTG
CGTGCTGCCTGGTTCCTGAGACTCAAGCGTTTGTTTTGGCTTCCCCCTCC
TCATCTGATGTCGCCAGTCCTCGTCGCCTACAAGGAGCACCCCGCGGGAG
CGACGCGCGTCTGTCCTCCGCCAGAGAGTCGAGGACCTTCTGCGCGGTGA
AGCAGAGAGCCCGACGAGAGCAGGGACGACCCACCGTCACTACGACGAGG
TCGACCGCACCAAGCCTAGCCAAGGCATGCGGGGGCGTCGCTATCCTCAC
GACGGCGACGATGACAGTGACCACTACGATCGCGACACTTGCAAGCCCAA
CGATCAACACGGCCAGTCGCCACGATGGGAAAGAACGTCTCCGCTGGAGC
GCAGTAACAAGGAAATGAATCGTAGAGGGTTCGGGGTTAGAGGAGTGGCT
AGGGGGGCTGACTCGCAAACACGGAGGGAATGCGATGCAGCGGATGAATC
CGCAGGACGAGTTGCCGAGCTCGGCCGCCGGATAGCCGTGCGCTGTCTGC
ACATGGAGCAAGAGTGCTTGAGGAGAGAGCGAGCCCAAACGAGGCTTTTT
CAGGAACAGCTTCGTGGCGCTCGG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9010:588..4161+

>mRNA_H-canaliculatus_M_contigs9010.1.1 ID=mRNA_H-canaliculatus_M_contigs9010.1.1|Name=mRNA_H-canaliculatus_M_contigs9010.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1605bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9010:588..4161+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGATGGGTCTTGTGGCTTCGACGAAGAAGGAAACCTCGAGGACGACGA
AAACGGCACCGACGCCTTCGAGGCCGCACTTCAGCCTTTGCCCACGTGGG
ATGGGAGGCCTTACCTCATCACCAACAAGGGCAGCATCGAAAAGCCTATC
TTTCCGATCGCGTCCCTTTTTCCATCCACTAGGGAGCTCGAATGGGCCAG
CAGCGCGCCCTATTTGTGGCCAGAAGACCAAGGTGAAATCATGAACAACC
GTCACGCGGACATTGCCAGTCGAGGACCAGACGAGTCAAAGACTACTGGG
AACACTGACCCATCGGTGCTCAGAGCGAGCACAGCGGTGTGCGATCCAAA
TGTGACGTTGCAGCAGCCACAGCTGCAGCCGTGGGCCATCAGGCGCTCCA
CATCACCAGATCCGAAACGGCTTGGCCACTTGTCGGAAGCGGAAGGGGCT
CTTACCCATGTCATCAGACTGCACAGGACGGGGAGTGTAGTAGTCGAACG
AAAAGGCAGCCCGAGCACGTCTGGAGATATCGCGGACGAAGTAGGTATTG
CGAGCCTTGGGCGGCACAGCAGAGGGCCCTCCTACTACGCAGAAGAGGAG
CGATTCTGGCTAGAAAGGTGTCCGACCGGCAGCGCCGCAGAGACTGCTGT
GCGCGGGGAACACAGAGATGAAGCCGTCGCTCCCTCAAGGCAGTCGCCGT
CGATGCGATCAGGTCGCGACACCCAAAGGACGGGGACGGAGGCGAGCTAC
GACTATTTCACGGCCGAAGCCGCCTACCGTCCCTCTACTCGGAAGTCCTC
GACGCCTCGTATCGCCAGCCCCTGCTCGCACGACAGCGATGGGGCCGCGG
GGAAAGACGGGCGAAGCAGGCGAAGAACACGAAGCACACATTTCGAGGAA
GATGACGGCTTGAACGCCACAAAAGAAAAATTCCAGCAAGAACCGCGACC
GCCACAATGCCGAGCGCTCACCAGTGATCGTGGCGCGCGGACCAACGGAC
TTGAGACAATGACGGGTGCGGCCCAGCGACGGCGATCCCGGTCGCTGCGC
GACGCGGAGAACGTTCTGCATGGGGTGCTGGAGTCGATGGCGGAAGCAGC
GCCAACGAATGATGCGAGCACCCCGCGGGAGCGACGCGCGTCTGTCCTCC
GCCAGAGAGTCGAGGACCTTCTGCGCGGTGAAGCAGAGAGCCCGACGAGA
GCAGGGACGACCCACCGTCACTACGACGAGGTCGACCGCACCAAGCCTAG
CCAAGGCATGCGGGGGCGTCGCTATCCTCACGACGGCGACGATGACAGTG
ACCACTACGATCGCGACACTTGCAAGCCCAACGATCAACACGGCCAGTCG
CCACGATGGGAAAGAACGTCTCCGCTGGAGCGCAGTAACAAGGAAATGAA
TCGTAGAGGGTTCGGGGTTAGAGGAGTGGCTAGGGGGGCTGACTCGCAAA
CACGGAGGGAATGCGATGCAGCGGATGAATCCGCAGGACGAGTTGCCGAG
CTCGGCCGCCGGATAGCCGTGCGCTGTCTGCACATGGAGCAAGAGTGCTT
GAGGAGAGAGCGAGCCCAAACGAGGCTTTTTCAGGAACAGCTTCGTGGCG
CTCGG
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