mRNA_H-canaliculatus_M_contigs891.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs891.1.1
Unique NamemRNA_H-canaliculatus_M_contigs891.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs891.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ6_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 4.420e-70
Identity = 108/125 (86.40%), Postives = 116/125 (92.80%), Query Frame = 1
Query:   34 MNRCASGIKGVLETLANQLKQLEEEIKIDEAGKHEFERRLAQLGEKKREIQGRIDANMRWTSSFDQDLGPFEQMYKAKTKEIASIYDDAKERHKEGIKVLVDEFRYHPEFFRPKDSFHATPFVPK 408
            MNRCASGIKGVLETLAN+LKQ EEEIK DEAGK EFERRL+QL EKKREI+ RIDANMRWT+SFDQDLGPF +MYKAKTKEIASIYDDAK RH+EG+KVLV+EF YHPEFFRPKD FHATPFVPK
Sbjct:    1 MNRCASGIKGVLETLANKLKQQEEEIKADEAGKLEFERRLSQLREKKREIESRIDANMRWTASFDQDLGPFAKMYKAKTKEIASIYDDAKARHREGVKVLVNEFNYHPEFFRPKDGFHATPFVPK 125          
BLAST of mRNA_H-canaliculatus_M_contigs891.1.1 vs.
Match: Hypothetical (protein n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DC27_9EUKA)

HSP 1 Score: 112 bits (281), Expect = 1.510e-27
Identity = 55/133 (41.35%), Postives = 82/133 (61.65%), Query Frame = 1
Query:   10 ITIKHFRGMNRCASGIKGVLETLANQLKQLEEEIKIDEAGKHEFERRLAQLGEKKREIQGRIDANMRWTSSFDQDLGPFEQMYKAKTKEIASIYDDAKERHKEGIKVLVDEFRYHPEFFRPKDSFHATPFVPK 408
            I I     +N  AS I  +LE     ++QL  EIK D+ G  ++ER+L  L  +KR+++ RI+AN +W +S+D ++GPF Q Y   T ++  +YD+AKE+H  G+ +L +EF YHP F R  D F A PF P+
Sbjct:    9 IGIAQTHQLNSNASNIANLLENAQTAVEQLNTEIKADDKGIEDWERQLGYLTRRKRDLEKRIEANTKWATSYDGEIGPFTQKYDNFTSDLGKLYDNAKEKHAGGLDILKEEFEYHPAFKRWHDYFSAVPFKPE 141          
BLAST of mRNA_H-canaliculatus_M_contigs891.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XS68_9STRA)

HSP 1 Score: 114 bits (285), Expect = 6.420e-25
Identity = 54/125 (43.20%), Postives = 82/125 (65.60%), Query Frame = 1
Query:   34 MNRCASGIKGVLETLANQLKQLEEEIKIDEAGKHEFERRLAQLGEKKREIQGRIDANMRWTSSFDQDLGPFEQMYKAKTKEIASIYDDAKERHKEGIKVLVDEFRYHPEFFRPKDSFHATPFVPK 408
            MNR +SG+ GVLETL  ++  LE EI+ DE GK +++ +L +LG+++ ++  ++  +  W + FD+ + P E  Y   T  + + Y+DAK RH +G++VLVD F YHPEF R  D+F A PF PK
Sbjct: 1246 MNRASSGLGGVLETLELRIDTLEREIRADEKGKQDYDDQLFRLGQRRADLDAKLRESQDWIALFDRSIKPLEGKYSETTGHMQAQYEDAKLRHAQGVRVLVDNFDYHPEFKRFSDTFSAVPFKPK 1370          
BLAST of mRNA_H-canaliculatus_M_contigs891.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WQL8_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.450e-24
Identity = 52/130 (40.00%), Postives = 78/130 (60.00%), Query Frame = 1
Query:   19 KHFRGMNRCASGIKGVLETLANQLKQLEEEIKIDEAGKHEFERRLAQLGEKKREIQGRIDANMRWTSSFDQDLGPFEQMYKAKTKEIASIYDDAKERHKEGIKVLVDEFRYHPEFFRPKDSFHATPFVPK 408
            K  R MNR  SGI G LE +   + QL  EIK DE GK +++ +L +L +++++++ ++     W++ F+  + P    Y   T  +   Y+DAK RH +GIKVL++ F YHPEF R  D+F A PF PK
Sbjct:   26 KDARKMNRVTSGIGGALEGVQMTINQLNREIKADEKGKQDYDDQLFRLNQRRKDMEAKLLECREWSALFESKIKPLAGKYTETTDNMQGQYEDAKLRHAQGIKVLIENFDYHPEFKRFSDTFSAVPFKPK 155          
BLAST of mRNA_H-canaliculatus_M_contigs891.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WTT7_GLOUD)

HSP 1 Score: 112 bits (281), Expect = 2.150e-24
Identity = 53/133 (39.85%), Postives = 83/133 (62.41%), Query Frame = 1
Query:   10 ITIKHFRGMNRCASGIKGVLETLANQLKQLEEEIKIDEAGKHEFERRLAQLGEKKREIQGRIDANMRWTSSFDQDLGPFEQMYKAKTKEIASIYDDAKERHKEGIKVLVDEFRYHPEFFRPKDSFHATPFVPK 408
            ++ K    MNR  SGI GVL+ L  ++  L+ EIK DE GK +++ +L +L +++ +++ ++  +  W + F+  + P E  Y   T+ + S Y+DAK RH +GI+VL+D F YHPEF R  D+F A PF PK
Sbjct: 1143 MSAKDVSKMNRATSGIGGVLDNLQTKIDMLDREIKADEKGKQDYDDQLFRLRKRREDLEAKLRESQNWIALFESKIAPLEGKYAETTENMQSQYEDAKLRHAQGIRVLMDNFEYHPEFKRFSDTFSAVPFKPK 1275          
BLAST of mRNA_H-canaliculatus_M_contigs891.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MXB1_PHYIT)

HSP 1 Score: 101 bits (252), Expect = 4.410e-23
Identity = 49/125 (39.20%), Postives = 76/125 (60.80%), Query Frame = 1
Query:   34 MNRCASGIKGVLETLANQLKQLEEEIKIDEAGKHEFERRLAQLGEKKREIQGRIDANMRWTSSFDQDLGPFEQMYKAKTKEIASIYDDAKERHKEGIKVLVDEFRYHPEFFRPKDSFHATPFVPK 408
            MNR  SGI G LE +  +++ L  EIK DE GK +++ +L +L E++++++ ++     W++ F+  + P    Y   T  +   YD+AK+RH +GI VL+  F YHPEF R  D+F A PF PK
Sbjct:   32 MNRVTSGIGGALEGVQMRIETLTREIKADEKGKKDYDEQLFRLNERRKDLEAKLKECREWSALFESKIKPLAGKYTETTDSMQGQYDEAKQRHAQGIIVLMQNFDYHPEFKRFSDTFTAVPFKPK 156          
BLAST of mRNA_H-canaliculatus_M_contigs891.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WW89_9STRA)

HSP 1 Score: 105 bits (261), Expect = 9.370e-22
Identity = 52/130 (40.00%), Postives = 78/130 (60.00%), Query Frame = 1
Query:   19 KHFRGMNRCASGIKGVLETLANQLKQLEEEIKIDEAGKHEFERRLAQLGEKKREIQGRIDANMRWTSSFDQDLGPFEQMYKAKTKEIASIYDDAKERHKEGIKVLVDEFRYHPEFFRPKDSFHATPFVPK 408
            K  R MNR  SGI G LE +   + QL  EIK DE GK +++ +L +L +++++++ ++     W++ F+  + P    Y   T  +   Y+DAK RH +GIKVL++ F YHPEF R  D+F A PF PK
Sbjct: 1101 KDARKMNRVTSGIGGALEGVQMTINQLSREIKADEKGKQDYDDQLFRLNQRRQDMEAKLLECREWSALFESKIKPLAGKYAETTDSMQGQYEDAKLRHAQGIKVLIENFDYHPEFKRFSDTFSAVPFKPK 1230          
BLAST of mRNA_H-canaliculatus_M_contigs891.1.1 vs.
Match: Uncharacterized (protein n=3 Tax=Volvox TaxID=3066 RepID=D8TP60_VOLCA)

HSP 1 Score: 97.8 bits (242), Expect = 1.910e-21
Identity = 54/133 (40.60%), Postives = 79/133 (59.40%), Query Frame = 1
Query:   10 ITIKHFRGMNRCASGIKGVLETLANQLKQLEEEIKIDEAGKHEFERRLAQLGEKKREIQGRIDANMRWTSSFDQD-LGPFEQMYKAKTKEIASIYDDAKERHKEGIKVLVDEFRYHPEFFRPKDSFHATPFVP 405
            +T++ F   N  ++ I G  + L   LK+LE+++K DEAGK EFE  L QL  K+ ++Q ++D N  W  + +Q      EQ YK   ++I +IY+ AKE H +GI +L+ EF YH  + R  DSF A PF P
Sbjct:   15 VTVQEF---NHTSTSIGGTADGLRRSLKELEDDLKKDEAGKKEFETYLKQLETKRADLQRKVDENKAWLEAIEQQGSNSSEQQYKRLLEQIQTIYEGAKEFHGKGIDMLIKEFGYHIAYKRWNDSFTAIPFKP 144          
BLAST of mRNA_H-canaliculatus_M_contigs891.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YJN4_9CRYP)

HSP 1 Score: 91.7 bits (226), Expect = 2.760e-19
Identity = 45/127 (35.43%), Postives = 74/127 (58.27%), Query Frame = 1
Query:   25 FRGMNRCASGIKGVLETLANQLKQLEEEIKIDEAGKHEFERRLAQLGEKKREIQGRIDANMRWTSSFDQDLGPFEQMYKAKTKEIASIYDDAKERHKEGIKVLVDEFRYHPEFFRPKDSFHATPFVP 405
            F+    CA  +K ++E       QL  EIK DE G  ++  ++ +L ++++ +Q RI  N  W +++D++ GPF   YK    ++  +Y  AK +H +G+K+L++ F YHPEF R  D+F A PF P
Sbjct:   29 FKVTTNCAFSVK-IMENFKISSDQLLSEIKADEKGLEDYGGQIMRLKQRRQFLQKRIVENQAWAANYDENFGPFVAKYKDFMDQMDKLYQQAKVKHADGLKLLMEHFAYHPEFKRWSDTFSAVPFRP 154          
BLAST of mRNA_H-canaliculatus_M_contigs891.1.1 vs.
Match: FAP286 (protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H1N4_GONPE)

HSP 1 Score: 90.5 bits (223), Expect = 6.820e-19
Identity = 52/134 (38.81%), Postives = 77/134 (57.46%), Query Frame = 1
Query:   10 ITIKHFRGMNRCASGIKGVLETLANQLKQLEEEIKIDEAGKHEFERRLAQLGEKKREIQGRIDANMRWTSSFD-QDLGPFEQMYKAKTKEIASIYDDAKERHKEGIKVLVDEFRYHPEFFRPKDSFHATPFVPK 408
            IT++ F   N  ++ I G  + L   LK+LE E+K DEAGK E+E  L +L  ++ ++Q ++D N  W  + + Q +   E  YK    +I  IY+ AKE H +GI +L+ EF YH  + R  D+F A PF PK
Sbjct:   21 ITVQQF---NHTSTSIGGTADGLRRSLKELEAELKKDEAGKKEYEAYLKRLEIQRADLQRKVDENRAWLDAVEAQGMESAESKYKQLLDQIQQIYEGAKEFHGKGIDLLIKEFGYHIAYKRWNDTFTAIPFKPK 151          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs891.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
Uncharacterized4.420e-7086.40protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical1.510e-2741.35protein n=2 Tax=Palpitomonas bilix TaxID=652834 Re... [more]
Uncharacterized6.420e-2543.20protein n=1 Tax=Pythium brassicum TaxID=1485010 Re... [more]
Uncharacterized1.450e-2440.00protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID... [more]
Uncharacterized2.150e-2439.85protein n=1 Tax=Globisporangium ultimum (strain AT... [more]
Uncharacterized4.410e-2339.20protein n=2 Tax=Phytophthora infestans TaxID=4787 ... [more]
Uncharacterized9.370e-2240.00protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID... [more]
Uncharacterized1.910e-2140.60protein n=3 Tax=Volvox TaxID=3066 RepID=D8TP60_VOL... [more]
Hypothetical2.760e-1935.43protein n=1 Tax=Hemiselmis tepida TaxID=464990 Rep... [more]
FAP2866.820e-1938.81protein n=1 Tax=Gonium pectorale TaxID=33097 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs891contigH-canaliculatus_M_contigs891:7702..9370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LMQ6
Model size816
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue9.28e-73
EggNOG OGs2CZ2R@1|root,2S82N@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_003290.1
Cds size411
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854179.1977959-UTR-H-canaliculatus_M_contigs891:7701..81061696854179.1977959-UTR-H-canaliculatus_M_contigs891:7701..8106Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs891 7702..8106 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854179.214905-CDS-H-canaliculatus_M_contigs891:8106..83581696854179.214905-CDS-H-canaliculatus_M_contigs891:8106..8358Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs891 8107..8358 -
1696854179.2272637-CDS-H-canaliculatus_M_contigs891:8778..88771696854179.2272637-CDS-H-canaliculatus_M_contigs891:8778..8877Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs891 8779..8877 -
1696854179.2399797-CDS-H-canaliculatus_M_contigs891:9310..93701696854179.2399797-CDS-H-canaliculatus_M_contigs891:9310..9370Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs891 9311..9370 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs891.1.1prot_H-canaliculatus_M_contigs891.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs891 8107..9370 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs891.1.1

>prot_H-canaliculatus_M_contigs891.1.1 ID=prot_H-canaliculatus_M_contigs891.1.1|Name=mRNA_H-canaliculatus_M_contigs891.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=137bp
MAPITIKHFRGMNRCASGIKGVLETLANQLKQLEEEIKIDEAGKHEFERR
LAQLGEKKREIQGRIDANMRWTSSFDQDLGPFEQMYKAKTKEIASIYDDA
KERHKEGIKVLVDEFRYHPEFFRPKDSFHATPFVPK*
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mRNA from alignment at H-canaliculatus_M_contigs891:7702..9370-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs891.1.1 ID=mRNA_H-canaliculatus_M_contigs891.1.1|Name=mRNA_H-canaliculatus_M_contigs891.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1669bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs891:7702..9370- (Hapterophycus canaliculatus Oshoro7m male)
ATGGCTCCCATTACCATCAAGCATTTTCGAGGGATGAACCGGTGCGCAAG CGGGATAAAGGTGCGGCAAACAAAGAAACAATATTTTGGGTCCTCGCATA CCCGTCCCCCACTTCAGCAGATTCCAGTATACTTACACCTAGTCTCCTCC TCACTCAGGAAAATGAGCGGCCACTCCCAAGCTCGCCGGACTTCGAGCTG AATTCTCTTCTAACTCGTTAGTGCAGTAAATATCCCAGGTACTCTCCATC TCCTTGTTGTAAAAACGATACCCTATACCATGGTACTCGAGTATATCGGG GGGTTCGCAAAATGTAGCCCGATCGCTGTGCCGCCTCGTTATTATCTGTT TTGGAAGGGCGAGCAAAAATTATTACTGTAAATATCGCTACAGTAAAGAG CGGAAAGCAGGTTGCATGATTTTCGAAGACACAACACTCGAGTGCCGAAG TCAAGTGTGTGCATGGCGTCCGCGATTCGATTGGTACTCTCAGGGGGTGC TAGAGACTTTGGCGAACCAGCTCAAGCAGCTTGAGGAGGAGATAAAAATC GACGAAGCTGGGAAGCACGAGTTCGAACGACGGCTAGCTCAGGTAGATTA TATCATTGACACACGGGCCTACAGTGCTCGTTTCATGGAGCCAACTCACT TTCAGCCATGCTGTGCTCTCTGACGAAAGCGCTCCGCCTGTGACTTGTAC ACGTGCAAATACGCGCTATACCAAAACAAGCAACTACCGCGATGAGCCAT CCACTCCCCGTGCTTTTTCGAAGCTTGACTCCCTGCTGAAAACATGAAGG TAGTCGTCCCGTTGGCTCCTTCACGCCGAGGCTGTGCTTCTCGATTACTT GTTGGCTTTAACATGAACCTCTCGAAGTCTTGAAACGCGTACAATACAGG GTGCACCGAGGCACGGGTGCGAAAACAGATGACCTCTCTCGCAAGTATCA AACCCTTGAGGTTGAGGTTGCCTGACGAGATGTTGTATTCCGCCTTTCCC GAAAACAATCAGTTGGGGGAGAAGAAGAGAGAGATCCAGGGTCGGATAGA TGCCAACATGCGGTGGACGTCCAGTTTTGACCAGGATTTAGGGCCGTTCG AGCAGATGTACAAGGCCAAGACGAAAGAGATCGCCTCTATCTATGACGAT GCCAAAGAACGTCACAAGGAGGGCATCAAGGTTCTTGTCGACGAATTTCG CTATCACCCTGAGTTTTTCAGGCCGAAGGACAGCTTTCACGCCACGCCAT TCGTGCCGAAGTAATCAGTTCAAAGATGGCGATGCATATTGTTTCAACGA AGAATTTCTCAACTTTCTAGGACTTAGACGGATTCTTTGTTGTTTGCGGA AGGAAAGAGAGGTATTCTCAATTGACAAGGCTGGGCTACCCCAATTTGCC GTGCCCAATCCAGCTTGGAAACATCAAGGTACCCGCTTCCTAACGTCAAG GATATGCATGCATGTGACGAAAAAGAGGGGTGAGGCATTGCACTTCCCGC CGAAAATATTTGCTGTGGACACACCTGCGTAGGTGTGATAACGAAAGCGA TGACATGGAGGTGCGATTCACGGCCAGAATGTGCACGAATCAATGTACAA TATTAATATTTTCTTCGTGCCACTCCCTCAATCCGAGAACGGAACACATC AACACAAGCCCTCTCCTCA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs891:7702..9370-

>mRNA_H-canaliculatus_M_contigs891.1.1 ID=mRNA_H-canaliculatus_M_contigs891.1.1|Name=mRNA_H-canaliculatus_M_contigs891.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=411bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs891:7702..9370- (Hapterophycus canaliculatus Oshoro7m male)
ATGGCTCCCATTACCATCAAGCATTTTCGAGGGATGAACCGGTGCGCAAG
CGGGATAAAGGGGGTGCTAGAGACTTTGGCGAACCAGCTCAAGCAGCTTG
AGGAGGAGATAAAAATCGACGAAGCTGGGAAGCACGAGTTCGAACGACGG
CTAGCTCAGTTGGGGGAGAAGAAGAGAGAGATCCAGGGTCGGATAGATGC
CAACATGCGGTGGACGTCCAGTTTTGACCAGGATTTAGGGCCGTTCGAGC
AGATGTACAAGGCCAAGACGAAAGAGATCGCCTCTATCTATGACGATGCC
AAAGAACGTCACAAGGAGGGCATCAAGGTTCTTGTCGACGAATTTCGCTA
TCACCCTGAGTTTTTCAGGCCGAAGGACAGCTTTCACGCCACGCCATTCG
TGCCGAAGTAA
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