mRNA_H-canaliculatus_M_contigs8904.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8904.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8904.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs8904.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFF8_9PHAE)

HSP 1 Score: 613 bits (1581), Expect = 5.020e-211
Identity = 323/485 (66.60%), Postives = 377/485 (77.73%), Query Frame = 1 
Query:   16 AVLIHSGAFTRQLNLVGSDLSVEHLALTDGDVRYTDVTVDRR-------TGDVYFTTNNSSIQRARYDSISSPTWEVTPVIGGHVEVRVEGYNLGASAEDIVYFAIRGVECRSLRRESSNSLVCVLGDPTVTGDLGEGIGPEDIVVQTAIGGWTHGGYPGDFVDAKLADHSLKPIISRVEATGRAITPGALCFDDVRGHLYYSDHSTRSVNRIYLADDGDDRSAQTVELDFDAFLPHIGMVHGLAVDGTEGRNGGYLYFSEGEMGTISRAELPADGNLSASTGAPQVLASGLIDPMGVALEPNGGT-RLFFALRGGSIRAVMRDGSASTAVPPTA-LLNGGGYEVRGFDSGTRLEGIAISEDEDSTDDPTQLRLYWIESGRAAGIKRSTLDGTRPEEISVFDD-TGQDIRLIWPRGLVFGAGASAGLLYCEFLGSVHLLPYP-AGERAETVIAADSYPAAKAVQALVAAASRGGLKERLFTESLR 1437
            A LIH GAFT QLNLVG+D SVE LALTD DV++  +TVD         +GDVY+ T+NS+IQRA YDS  SP+W VT V+GGHVEVRVEGYNLG S +D+V F+++GVEC + RRESSN+LVC LGDP VT DLGE +G EDIVVQTA GGWT GGYPGDFVDAKLADHSLKPII+RVEATGR I+P ALCFD   G LYYSD +TRS+NRI L + GD  S  T +++FDAFLP +G+V G+A+D +EG+NGG++YFS+ + GTISR ELPADG      GA QVLASGLIDPMG+ALEP+GG  RLF+ALRGG I AV RDGS ST+VPPTA LL GGGYEVR FDSGTRL+GIAIS  E    DPT++RLYW ESGR   IKRSTLDGTRPE++SV DD T    +L+WPRGL FGA AS GLL+ E+LGSV LLP P A    +T+  ADSYPAA A+ ALVAAA R G +ER FT S+R
Sbjct:   36 ATLIHRGAFTEQLNLVGADASVEQLALTDDDVQFLGITVDESRSGGKMGSGDVYYATSNSAIQRAHYDSAKSPSWYVTTVVGGHVEVRVEGYNLGTSIDDVVSFSVKGVECPTRRRESSNTLVCALGDPAVTSDLGESVGTEDIVVQTASGGWTQGGYPGDFVDAKLADHSLKPIITRVEATGRTISPRALCFDSAGGTLYYSDLATRSLNRISLDNSGDGGSTLTAKVEFDAFLPDVGLVQGMAIDVSEGQNGGFVYFSDAQGGTISRVELPADGTRPEVPGARQVLASGLIDPMGIALEPDGGRGRLFYALRGGRICAVSRDGSISTSVPPTAVLLEGGGYEVRRFDSGTRLDGIAISASEGGVLDPTEIRLYWAESGRTPAIKRSTLDGTRPEDVSVEDDGTEAKGQLVWPRGLAFGAEASTGLLFGEYLGSVRLLPLPPARGSVDTIAEADSYPAAVAIHALVAAAGREGAEERFFTHSVR 520
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BLAST of mRNA_H-canaliculatus_M_contigs8904.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLU4_9STRA)

HSP 1 Score: 181 bits (459), Expect = 9.980e-46
Identity = 155/481 (32.22%), Postives = 236/481 (49.06%), Query Frame = 1 
Query:   52 LNLVGSDLSVEHLALTDGDVRYTDVTVDRRTGDVYFTTNNSSIQRARYDSISSPTWEVTPVIGGHVEVRVEGYNLGASAEDIVYFAIRGVECRSLRRESSNSLVCVLGDPTVTGDLGEGIGPEDIVVQTAIGGWTHGGYPGDFVDAKLADHSLKPIISRVEATGRAITPGALCFDDVRGHLYYSDHSTRSVNRIYLADDGDDRSAQTVELDFDAFLPHI-GMVHGLAVDGTEGRNGGY---LYFSEGEMGTISRAELPADGNLSASTGAPQVLASGLIDPMGVALEPN--GGTRLFFALRGGSI-RAVMRDGSASTAVPPTALLN----------GGGYEVRGFDSGTRLEGIAISEDEDSTDDPTQLRLYWIESGRAAGIKRSTLDGTRPEE-ISVFDDTGQDIRLIWPRGLVFGAGASAGLL--YCEFLGSVHLLPYP-AGERAETVIAADSYPAAKA-VQALVAAASRGGLKERLFTE 1428
            L++V S  + + L L  G  RY ++ +D  T  +Y+ T+++       + + +   +   ++ G V +++ GYNLG S ED++ F +RGV C++L  ES+NS+ C    P V                    G   GGY G FV+  LADHS  PII+ +    RA  P AL  D   G LY+S+H+ R++ R+    D  D SA  V     A +  + GMV G+A DG+          LY+S  + G I+R  L      +A+    +VLA+GL  PMG+AL+ +  GGT L+FA  GG+I +  +   +A+ A  P+              G    V    +  R++G+A++    +T DP +LRLYW ESG    + R+++ GT  E  +S  DD G    ++WPRG+  GA A  G +  + E+L  + +L    +G  A   I  D   AAKA V     A    G+   LF E
Sbjct:   42 LSIVDSQYNEQLLPLPSGQ-RYHNIIIDPDTRKIYWATDST------IEVMDASGSDRKTLLAGWVTIKLVGYNLGTSEEDVLQFTVRGVPCQALYYESANSVSCSFAAPAVAXXXXXXXXXXXXXTFATRSGTVTGGYHGAFVEHHLADHSASPIITGLSVERRAQAPYALALDAAAGALYWSNHAARTIERM----DAADGSALAV---LAAGVGKVCGMVAGVASDGSXXXXXXXXXVLYYSSADRGHIARMALRG----AAAGAREEVLAAGLQRPMGIALDTDAAGGT-LYFAHGGGTISKLALLPSAAAGATAPSXXXXXXXXXXXXXXGAVRTVLQRGTLARIDGVALAAA--ATADPGELRLYWAESGARGAVARASVYGTDVEILVSDADDAGGGAAVLWPRGVALGAYAGGGTVVAFTEYLSRLRVLSAAGSGGTAAAAILVDEACAAKAKVVERAEAGKSAGVDGALFLE 501
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BLAST of mRNA_H-canaliculatus_M_contigs8904.1.1 vs.
Match: Aste57867_7709 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KIP7_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.290e-12
Identity = 95/393 (24.17%), Postives = 164/393 (41.73%), Query Frame = 1 
Query:  124 VTVDRRTGDVYFTTNNSSIQRARYDSISSPTWEVTPVIGGHVEVRVEGYNLGASAEDIVYFAIRGVECRSLRRESSNSLVCVLGDPTVTGDLGEGIGPEDIVVQTAIGGWTHGGYPGDFVDAKLADHSLKPIISRVEATGRAITPGALC---FDDVRGHLYYSDHSTRSVNRIYLADDGDDRSAQTVELDFDAFLPHIGMVHGLAVDGTEGRNGGYLYFSEGEMGTISRAELPADGNLSASTGAPQVLASGLIDPMGVALEPNGGTRLFFALRGGSIRAVMRDGSASTAVPPTALLNGGGYEVRGFDSGTRLEGIAISEDEDSTDDPTQLRLYWIESGRAAGIKRSTLDGTRPEEISVFDDTGQDIRLIWPRGLVFGAGASAGLLYCEFLGSV 1293
            +TV  +   +Y++ + + I R+  D  S     V   +G  V V ++GYN GASA D+    +  + C S+   S  ++ C+L  P V       + P D+ +QT  G  T  G      D   +   +KP++S +      ++P  L    FD     LY+S +    + R ++         QT++         +  V+G+++ GT       L ++    GTI+  ++    N      AP V+   L  P G+ ++      L+F  +GG I   + +G + +     ++       + G  S TRL GIA+ E        T   LYW ES     I R+ LD  + +   +    G +  + WPR +      S  L + E+ G +
Sbjct:   54 MTVHEQAAKLYWS-DGTVIWRSNIDGSS-----VEVFVGAFVSVTLQGYNFGASANDVTLTVLTYL-CTSILSWSPTTVTCLLRIPAVASS--NYVTPPDVTIQTPFGSTT--GITPAINDLLSSKAYVKPLVSNISIQVTLLSPHTLAIDNFDATAKWLYFSSYVCGCIYRAHV---------QTMDAT-------VWSVYGMSIFGT------LLRYTVESKGTINLLDVSNTSN------APIVIIQNLKSPRGICVDHTNSV-LYFVEKGGKIFKALTNGKSFSDQQQNSIQI---QRLMGLSSFTRLNGIALDE--------TNNMLYWSESNSNV-IARAPLDILQRQ---IVIGGGPNSIISWPRHV--HVTQSDALFFSEYGGRI 389
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8904.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized5.020e-21166.60protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
Uncharacterized9.980e-4632.22protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Aste57867_77091.290e-1224.17protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8904contigH-canaliculatus_M_contigs8904:680..3940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2301
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionSix-bladed beta-propeller, TolB-like
Ec32 orthologEc-06_002340.1
Cds size729
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854178.9756389-UTR-H-canaliculatus_M_contigs8904:679..8181696854178.9756389-UTR-H-canaliculatus_M_contigs8904:679..818Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8904 680..818 +
1696854178.9908247-UTR-H-canaliculatus_M_contigs8904:1294..15601696854178.9908247-UTR-H-canaliculatus_M_contigs8904:1294..1560Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8904 1295..1560 +
1696854179.0027475-UTR-H-canaliculatus_M_contigs8904:2044..23501696854179.0027475-UTR-H-canaliculatus_M_contigs8904:2044..2350Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8904 2045..2350 +
1696854179.0268085-UTR-H-canaliculatus_M_contigs8904:3079..39401696854179.0268085-UTR-H-canaliculatus_M_contigs8904:3079..3940Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8904 3080..3940 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854179.0150032-CDS-H-canaliculatus_M_contigs8904:2350..30791696854179.0150032-CDS-H-canaliculatus_M_contigs8904:2350..3079Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8904 2351..3079 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8904.1.1prot_H-canaliculatus_M_contigs8904.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8904 2351..3079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8904.1.1

>prot_H-canaliculatus_M_contigs8904.1.1 ID=prot_H-canaliculatus_M_contigs8904.1.1|Name=mRNA_H-canaliculatus_M_contigs8904.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=243bp
MVHGLAVDGTEGRNGGYLYFSEGEMGTISRAELPADGNLSASTGAPQVLA
SGLIDPMGVALEPNGGTRLFFALRGGSIRAVMRDGSASTAVPPTALLNGG
GYEVRGFDSGTRLEGIAISEDEDSTDDPTQLRLYWIESGRAAGIKRSTLD
GTRPEEISVFDDTGQDIRLIWPRGLVFGAGASAGLLYCEFLGSVHLLPYP
AGERAETVIAADSYPAAKAVQALVAAASRGGLKERLFTESLR*
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mRNA from alignment at H-canaliculatus_M_contigs8904:680..3940+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8904.1.1 ID=mRNA_H-canaliculatus_M_contigs8904.1.1|Name=mRNA_H-canaliculatus_M_contigs8904.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3261bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8904:680..3940+ (Hapterophycus canaliculatus Oshoro7m male)
GCTGTTCTGGCCGATGCTGTGTTGATTCACAGTGGTGCGTTCACCCGGCA
GCTCAACCTGGTGGGTTCGGACCTCAGCGTGGAGCACCTCGCACTGACAG
ATGGAGACGTGCGATACACAGATGTTACGGTTGATCGACGTGAGAAAGTT
TGCGGCCACAAAATCCATGCGTTCAACCCTTCGAGAGCACAGTAGACCAG
CCAAAATTTGGGTCCTGTACGCGAGAACAGCACAAACTTCGCTTAAAATC
GTCCATAAAAATATATTTAGCACAGGCGACAGAGGTTCAGGGGAGCGGTC
TGTCTGATCTGTGTCGCGATTCATGCATCATGGAGCTCTTATTCCTGAGA
GACCGAAGACTGGATTGCGCTTCTAGCCACGGCGGCAGTAGACTAGAATC
CTAAGCCTCCGTATCCTTCTTCTAGTTGCTGCCGTGCCGAAGAAAAACAA
CGGTGTCCGACACCCAACCCCTTTCTCTGCCAGTTTCGCGTTCTTCGGCA
TTTCGAGTGTGAATCTCACACAGACTAATAACATCGCGTTGACGATAGGT
AGCGAATCCTCCTGCTCTAAGCAACAAGTTTCTCACACCGCCTCGCCCTG
TGCACTCGTATAAAGGTACCGGGGACGTCTATTTTACAACCAATAACTCA
TCTATACAACGAGCACGGTACGACTCGATAAGTTCACCGACGTGGGAAGT
CACGCCGGTCATCGGGGGGCACGTTGAGGTGCGCGTCGAGGGGTACAACC
TCGGTGCCAGCGCCGAAGATATCGTGTATTTCGCCATCAGGGGTGTGGAA
TGCAGGAGCCTGAGAAGGGAGTCAAGCAACAGCCTCGTGTGTGTGCTTGG
GGACCCGACAGTTACAGGCGACCTTGGAGAGGTAGGAAACGCGGTGCTTT
GGTCAGGTTGCCAGGTGTTTCGTACCCACCTTTCATTTTCAAGATTTCAC
CCTTGGAGCTTCCGAGGGGGCACACCTTGGCAGGGAAACGACAAAATGGT
TAAGCAATCTGCAGACTAGATGGTAGGAGAGATAATTTTCGAGAGGGCGT
TTGAACCCAGGGAGACGTTTAAAAGAAATACACAACAACACCGTAGGAAC
ACCTCATGAGGTACGTTGCGTAGATCTATCTAGAAGTTTCTGTTGGGTTC
CAAATAGCGAAAGTTCATTGTGGATGGTTGGGACAAAAAGCAAAAAAGAT
GGAAGAGAAATGTTTTGTTCACAATATCTTTAAAACCCTTGTTGAAGGTT
AATGGACAAGATGGGTAGCATCGCTAGTGGTGTGGACGCTGAGTTCACCG
CGCTGCCCGTGTACAGCGTTTGGCAAACGAAATACAAATCATATGATGTT
CTCTTTGTTTTTCAGGGTATCGGACCTGAAGACATTGTCGTTCAAACCGC
GATTGGAGGGTGGACGCACGGCGGGTACCCCGGCGACTTTGTGGATGCAA
AACTAGCTGACCACTCGCTCAAGCCCATCATCTCGCGTGTCGAGGCCACT
GGCCGCGCCATCACACCGGGTGCGCTTTGTTTTGACGATGTGCGGGGGCA
TCTTTACTACTCAGATCACAGCACTAGGTCTGTAAATAGGATATACCTCG
CCGATGATGGCGATGATCGGTCGGCGCAAACCGTGGAGTTAGACTTCGAC
GCATTTCTTCCACATATCGGCATGGTTCACGGCTTAGCAGTCGACGGAAC
GGAAGGCCGGAACGGCGGCTACCTCTACTTTTCAGAGGGCGAGATGGGGA
CAATTTCGAGGGCAGAGCTGCCTGCCGATGGAAACCTATCGGCATCAACG
GGGGCACCTCAAGTTCTCGCCTCCGGCTTGATCGACCCGATGGGGGTCGC
GCTCGAGCCAAACGGGGGAACACGCCTCTTCTTCGCGTTGCGCGGGGGCA
GCATTCGCGCCGTCATGCGAGATGGTTCTGCCAGCACCGCAGTCCCACCG
ACGGCACTTCTGAACGGAGGCGGCTACGAAGTCCGTGGTTTTGATTCAGG
GACACGTCTTGAAGGCATCGCAATATCTGAAGACGAGGACTCCACAGACG
ATCCCACTCAGCTTAGGCTGTACTGGATCGAGTCGGGCCGCGCCGCCGGG
ATAAAAAGGTCGACCTTGGACGGCACTCGCCCCGAAGAGATATCTGTTTT
CGACGATACTGGGCAAGATATTCGATTAATTTGGCCCCGCGGGCTGGTGT
TTGGTGCTGGAGCATCGGCGGGATTGTTATACTGTGAATTCCTCGGAAGT
GTTCATCTCCTACCATATCCGGCCGGGGAGCGTGCCGAGACGGTAATAGC
GGCGGACTCCTACCCTGCGGCAAAGGCGGTCCAGGCTTTGGTTGCAGCGG
CAAGTAGGGGGGGGCTTAAGGAAAGACTTTTCACGGAGAGCCTTCGATGA
GCTTGGTGAAGTTGCTTCATCTTGGTGCCGATTGCCTCAAGATGCCCTTT
GTTGCAAATTTGAGGGTTACCTTTCGGTCATCAACGCTCGTAGTTGATGG
AAAACTTTGATCTCAAGTCGAGTTTTTCTCCTGATGCGTGTGGATCGCGA
TGCCGTTGACCTCTGCTGCATATGTCCACAGGATCATACGTTTTCAGTGT
CATGTTTTACATTGTACCCAATATCAGTGCTGCCGGAATGTGACAATCAG
ACCGCAGGCACCTTGAGGTTTTTCCAGTGTTTCGTCTCTCGTACACTGCA
CACGCCATCGGACCGATGTGCACGTCCTCTGATACGAAGTCACTTTAAGG
ATGGGCTACCTTTCATCGGTAGGAATTTCCCGCAACCTTGGGGAAGATCC
AACTCCAAGTAGTCGCATTTTTACTTTTGTCTTCAAGTGTATCAGCTCGC
GGTTGGTTGTGTCTTCTCAAGATATTCAAACGTATGGCTCATCTCACGGA
AGTGGAGGCCCAGCCTGAGAAATCTGGGACACATGGCCTGCCTTTTGGCC
AAGGAAGGAAGCGCCACTCCAAAGTATCCCTTTCGATTCACACAAGCTTT
GTGTATTTGCGAAATCTCGTGGGGCGGTGCTACACGAAAAATACTTCGGC
ACACCGATTGATGCGAAACTTTAGCATCGAACCTAGTTAACTCGAAGGTT
CCCTAAGCGACAGAGAGGGAATCGCCTTTTCGTGTTTTGTCCATCGCAAT
CAACAAACATGCGTGCCTATTGGTCATACGACGACGAACGCATACTGATA
CTAGTAGTTCAGAGCACTGTAACGCTGGAAAGGCGATATCTCGTAGCTTA
CTCAATTGCTC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8904:680..3940+

>mRNA_H-canaliculatus_M_contigs8904.1.1 ID=mRNA_H-canaliculatus_M_contigs8904.1.1|Name=mRNA_H-canaliculatus_M_contigs8904.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=729bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8904:680..3940+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGTTCACGGCTTAGCAGTCGACGGAACGGAAGGCCGGAACGGCGGCTA
CCTCTACTTTTCAGAGGGCGAGATGGGGACAATTTCGAGGGCAGAGCTGC
CTGCCGATGGAAACCTATCGGCATCAACGGGGGCACCTCAAGTTCTCGCC
TCCGGCTTGATCGACCCGATGGGGGTCGCGCTCGAGCCAAACGGGGGAAC
ACGCCTCTTCTTCGCGTTGCGCGGGGGCAGCATTCGCGCCGTCATGCGAG
ATGGTTCTGCCAGCACCGCAGTCCCACCGACGGCACTTCTGAACGGAGGC
GGCTACGAAGTCCGTGGTTTTGATTCAGGGACACGTCTTGAAGGCATCGC
AATATCTGAAGACGAGGACTCCACAGACGATCCCACTCAGCTTAGGCTGT
ACTGGATCGAGTCGGGCCGCGCCGCCGGGATAAAAAGGTCGACCTTGGAC
GGCACTCGCCCCGAAGAGATATCTGTTTTCGACGATACTGGGCAAGATAT
TCGATTAATTTGGCCCCGCGGGCTGGTGTTTGGTGCTGGAGCATCGGCGG
GATTGTTATACTGTGAATTCCTCGGAAGTGTTCATCTCCTACCATATCCG
GCCGGGGAGCGTGCCGAGACGGTAATAGCGGCGGACTCCTACCCTGCGGC
AAAGGCGGTCCAGGCTTTGGTTGCAGCGGCAAGTAGGGGGGGGCTTAAGG
AAAGACTTTTCACGGAGAGCCTTCGATGA
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