mRNA_H-canaliculatus_M_contigs888.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs888.1.1
Unique NamemRNA_H-canaliculatus_M_contigs888.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs888.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIG5_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.570e-5
Identity = 20/37 (54.05%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:   16 CTKNPYFGWLGGKANFCVAHKEPGMVDVKNKRCEGEG 126
            CTK P FG+ GGKA FC  HK+  M++++N+RCE  G
Sbjct:   28 CTKQPAFGYSGGKAEFCSRHKKHQMINLRNRRCEQLG 64
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BLAST of mRNA_H-canaliculatus_M_contigs888.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0KHK8_9ZZZZ)

HSP 1 Score: 49.7 bits (117), Expect = 7.270e-5
Identity = 22/39 (56.41%), Postives = 23/39 (58.97%), Query Frame = 1 
Query:   16 CTKNPYFGWLGG-KANFCVAHKEPGMVDVKNKRCEGEGC 129
            C K   F   G  K  FC  HKEP MVDVKNK CE +GC
Sbjct:    6 CGKRAIFNLRGQTKGRFCAEHKEPEMVDVKNKTCEADGC 44
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs888.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.570e-554.05protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized7.270e-556.41protein (Fragment) n=1 Tax=viral metagenome TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs888contigH-canaliculatus_M_contigs888:5377..11100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FMP7
Model size384
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue1e-06
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Cds size384
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854178.187147-CDS-H-canaliculatus_M_contigs888:5376..54611696854178.187147-CDS-H-canaliculatus_M_contigs888:5376..5461Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs888 5377..5461 +
1696854178.209996-CDS-H-canaliculatus_M_contigs888:9145..92561696854178.209996-CDS-H-canaliculatus_M_contigs888:9145..9256Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs888 9146..9256 +
1696854178.226022-CDS-H-canaliculatus_M_contigs888:10053..101061696854178.226022-CDS-H-canaliculatus_M_contigs888:10053..10106Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs888 10054..10106 +
1696854178.2390766-CDS-H-canaliculatus_M_contigs888:10965..111001696854178.2390766-CDS-H-canaliculatus_M_contigs888:10965..11100Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs888 10966..11100 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs888.1.1prot_H-canaliculatus_M_contigs888.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs888 5377..11100 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs888.1.1

>prot_H-canaliculatus_M_contigs888.1.1 ID=prot_H-canaliculatus_M_contigs888.1.1|Name=mRNA_H-canaliculatus_M_contigs888.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=128bp
CGIPVCTKNPYFGWLGGKANFCVAHKEPGMVDVKNKRCEGEGCLKRGLFG
FSGEKARFCSAHRLHGMVDLKNKRCKWAGCPKQANFAPPGKTIASFCSRH
KSPVMVALNARRCEGDNCTKIASFGVEG
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mRNA from alignment at H-canaliculatus_M_contigs888:5377..11100+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs888.1.1 ID=mRNA_H-canaliculatus_M_contigs888.1.1|Name=mRNA_H-canaliculatus_M_contigs888.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=5724bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs888:5377..11100+ (Hapterophycus canaliculatus Oshoro7m male)
TGTGGCATCCCGGTCTGCACAAAAAACCCGTACTTCGGCTGGCTGGGCGG
CAAGGCGAACTTCTGCGTTGCGCACAAGGAACCAGGTATGCGGCATGTCG
TTGTGTTTGCCACGTTCGCAAGTTTGTAAATAGTGAGTTATATTTCCGTC
TACATGTTCCTCCTTTCCTTGGTCCTCTACTTCCTGCCACCAAATGGTCC
CATCATATCTATCTGTCGTTGAGTCTAAAAACGATACCCCGAGTAATGAT
TACTGTAGATTAAAAAGACAATCATAAGTCGTTGCCGTCGGCGTTTGTTT
GCTGACCTGGTATCCCTGTATTCGTCGCTGGCTTCGTAGTTTCCGTCCGT
ACGGGACTGGGTGAACGAGAGGGTGTGGTGCGAAGTGCAGTAGGTGGTCA
GGCCGCCTACTGTTAGGTACAGCGTTGGTCGTGGGAAGTGTTCACACCAT
CAAAGTCCTTTTTCGGAGTTGGAAATGGAAACGCGTCGACGCTTTTCTCT
CCGATTTGTCCTCTCGCAAGAATCGAATGGCACCAGCAGCGCGCGACGCT
CGGCGGCCCTCCATCATCGGGAAGACTCTCTTACGTCGCAGCACACATCT
CCTGAAGCTGCCAAGCAGTGGAATGGGAAAGATATATTTCGTGTGATTGC
CACCTACTCGTAATACATGGCGTCGAGAGTAGGCAAAAGGTTGTTGGCAT
TTTGTCAGTATGTCTTCTTGTGTTGCAGACCATTCTCCACCCCTCCTTTC
TGGGTGCTGGTATCGTGGTGTCGATCTTGAGAGGGCGAGTCACGTGCTGT
GTTTGGAAACGGTGTTCCATCGTCTCGATCGAACAGTGTGGGATGTTGGT
TAGGTATTCCCAGGATGTGCTTCTGCAATCGCGTGCATTCAAGGTGATTT
ATCAAACCTTTTTGTGCTTTACGCATCAAAAACATAACTGACTGCTGCAC
TTCATCAAAGTGCATCCATTCGAAGCCGCGGAGAAGTATAATGAAGGGCG
CCTCGAGATAGATGATCAACAGAACGTTCGTAGTCTTCCTTGAGCTCTTG
TTTCCTTCATGAACTCATGTCCACAGGCGTTGTGTGCGTGCGAGGTTTTC
TCTCGTCTGGTGGTTTCGACGATGCTCCAATGAAATTGGGCTCTAATTGA
GAGATGATCTGGCCCAGCCCCCTCGTAGACACAGACACAGACACACACAC
AGACACAGACACACACATGATGTTGCGGAGAGAGCAGAGAGGACGAAAGG
CTCGCTGTCTTACCCGCCAAAGCGCAACAACATCGAAAATTATACTTCGA
GTATTATTTACTCCGCATCAGACGCCACCGGAATACAGAGAGTCTGATGC
AGATGCAGACTCGTCTCTCTGTACTGAGGGCCTTTGGCGCCGTGCACCGC
GAGTGTAGCGCGTGGCAGAGCCATTATGTATCCCAGAGCCCTGCCTTTCT
TGTGCTGTGCAATTCTGGCTACTGCTCTGTGCTGGTGTGTTTCATTCGCT
AAACGTTTCAAGCACCTGCCCCTCCAACGCAGTAGGCTGGTCACCAACTG
CGGCTGTGAGACAGTAGCTCTGGACCCAAGGATAATGAAATGCGGATAAT
TATTTCGGTTCTTTTACTGAGCGGAGAGTTTTTCGGTAATTATCGCATAT
TTTGTCTAATGTGGCTCTTCGTCCAGTGCAGTGTTCTGAAGTGATGCTGC
CCGGCAAGTTCTGTAGCTGCAGCACACAACACACAACAGACACGTGCATA
CAGAGCAACCACCCGTAGAATCTTGGTGGAAGCCCAGTCGGATTGGGTCA
AGATTATCCAGAAATCAGGAACAACCGTTCAGGCGTTGATTTACTGCTGC
TGTTCTGCTGTCCTTCGGGAAGGTATGAGTTCATTAATGCAAGTAAGGTT
CGAAAGTTGCCCTACTTGTACAACCATTGAGAATATACTCTTAGTTATGT
GCTCTCCAACAGTATTTTGTTTATTATGACGTAACAGCAGTGCATTTAGA
ATTGGCGACGTTCAGGCCTCGTCGCCGGCGCACTCTTGATTTTACGAACC
AAAATACTTTTTTCTAACCAAGCTGCTGCCGATGATGCTTGATTATCTTA
AGGCAATATCGAGCGCGAAGGTTTGTGTGCGGTTTGCTCCTTGAAAGCGT
TCTATGAAATCGAGAGAGGAGGGAGAAGCAAGTGTGGCGGTGAGGTGGTG
GGTGTCACCTTCCTTGTTCCATCGGCGAAGAAAGGGCTTCGGCAACTTCT
TTTTCTTCGTACTACAGTACGCGGTGTGTCATACATACAAGTACAGGGTT
TATTTTTTTTCACCACAAACGAAGAGTCAGGATCCAGGAACGAACGGATG
AATTATTTCTCACACCCATTGATCTTCAATCCGAACGACGAAAGTGTTGC
TCTCATATTCTATGGATGTAGACTTGAGAATGTCGGATGAAAACTGGAAA
CAAAGTTACGAGTGAAATAACCACGTGAACAAGGTCGAAGAGTTCCTCGT
CCAAGGACTTGGTGAACACATGACGAAAAAACAGAGAAGAAGCAGAGAAG
CAGCTGAAGCTTGCTTTACGTTCACCCTCGCTCGTCCTGTGGTATGGGTG
TCGGTGCGGAAGCTTTGGTTTGTCTGAAGAATAGGGGGGAATCCCCACTC
GGTACTTTTGTGTTGGTGATCGAGTTTTATAAAAAGATAGGACAATCAGG
ATGATGAGCGGTTTACCATTCATTCTGCACCGACCGGCTAAATAGAGAGC
AGCAGCGTTTTATTCGTTCGTTGTTTTATTGTCGGTGGGGAGTGTACTGC
GGTTGTTATGAAAGAGAAAGTCTGGAGACAGGACATCCAGATGTCACGAA
TCCGTCAGCCTTTCAACTGGCACCACCGTATGCTGATGATGGTGGCAAGC
AGGTGGGAGGGCTTGCTTGCTTGCATCAATTAATAGTAGTAATAGGGTGG
ATTCCCTCCCGTCTTGCATGTCTATTTCGCGTAGTCTAGACGAATGAAAA
TGACCGCCTGATCAGCTCCACACTGATCAGCTCCTCCACAACACAGTGGC
GCTCCACACCCAACGAGAGACTTGGCCGCCCATTTTCCTTGTCTTTCCGT
GATCTCTACAACTACGCCGTCCATTCACCTGAGTGAGACTATTGGCGGTC
TCAAGAAAAAAGCGTGCACCTTTCCCACTTTCACCCCCCTCTCTCCCGAG
CCCTGTCCGAGAGTCCTGTGCTCTTGGGGCAAGGCCCTCTTTGATGATGG
TGTCAAACGTCCTGCGTAGGCCAGGTTTATGGTCGTAATAGAGAGCTAGC
TCAGGCTCTCTGGCGCCACAATCCCCGTCGATCCCAACATTTTGTTATTC
GAAGGTTTTGTGTTGTGGTTACGTGGTTACCCTCTCGGCTGCTGCTGCTG
CGCCCACCTGAGGAATGTTCCGCTTCATTCATGCAACATGGCGGGGCGGG
TCCGATCAGCAACGGGTCGGGATTGGCAGATTCAACCAGTGTAATGTAAC
GGAGGTTTTTGCTCATGACGGAGGCCGAGCACACATCTAGCGAGCGGTTG
ATGGCGAGCGCGCTCGCTCGTTCTCCGCTACTGTTGTAGCGATGCAGCAG
GAAAAACCTAATTTGAACGCATTGGGCCAGAACTCGAAGTTCTTTTCATT
TTCGATTTCACGTTGACCATGTTCGGTCGATTGATCCTGGTGCTGGTGGT
CATGTAATAGCCTCTTGTGCCTCTCTTGATATGATAAAACGCCATGATTG
AATCAAACCTTCACCGCAGGGATGGTGGACGTGAAGAACAAGCGTTGCGA
GGGCGAGGGGTGCCTGAAGAGGGGACTGTTTGGCTTCAGCGGGGAGAAAG
CGCGCTTCTGCAGCGCTCACCGCCTCCACGGTCAGTCGTCCATGAAACCA
CGACCGAGCAACACCTATCTGTTTGTCTCCTTACTTGCCCCGACGCCTTG
AATGCTCGAATATGGCTGGCACGTTTACGAACGCGCAGATAGCAACGCAA
AGCTTATCCGTCGGCTTCTCCAATAAATAAATCCCGTTCGCTGAACAGAA
CATTTTTTTCAAGTTGTTGGTGGTTGGTTCTACATCCCCATGGTGGAGTT
CTTGCATCGGGAAGGTTTTTCCCGAGCATCGATGCAGGAAGAAGGAAGCA
GGAAGCAGGAAGCAATTGGTGCCGCGTGTTATCTTCCCGTGCTTGATAAG
CTGCTACTGCTGCTGCTTGTAGGCGTGGCATAGTCCGGCCATGCCTCGAC
GAGGAGCGCCCCTTTTCAACCTGTGTTCATTGCCTCATATTTGATCTCGC
ATCTAGTCGCGGTCTTCCCTCCCGTGTGCCAACCCTCCCCTGCCTCTCTG
CCGTCCTCCTCCACTACTGGTCACTTGGGGATTGTTGCCTGTTGGGATTA
GCCCCTAGGCTGGGGCGGAGAAACGATCTGGCGTTGTTGCGTGAGCACGC
TGCTTGGCCTCACCCACCGCGCAACCTCTCCCCTTTCCCTCCTCGGAGAT
ATCAATTTCAATACCCAAGCGATCACGAATAGGCATTAATTAATTAATTA
ATCCGTTCGCGGGTATTTTCTACCTTCGCACGGCCGTTGACGCATGACGC
ATCAACACCGACCAGCATCTATCGCCGACTCGCTGACACCACCCTCTTAT
CAAAATCAACTCTCCCCAATCCATCAGGCATGGTGGACCTCAAGAACAAG
CGGTGCAAGTGGGCCGGCTGCCCGAAGCAGGTGAGCGGGTGTGTTAGGCG
TGATGCCGTTGCCCAGACGGCTCCTTCCGATCCGACAAAATCTTGCTTGA
ACGATGACAAACACGCGGGAGAGAGCCGTTTGAACGTTTGAACCTGTGTG
CCCCTGACGTGTTCAAGACTGAAAAAAAGAAATGCGACACGTGAAGTGTT
GTGGGCGAGGCGAGCGTGAACAGATCAGAGACAGCCGAGAGAGGAAGGGG
AAGGGGAAGAGCATGTAAGCGACCGAAGAGGTGATGAGAGGACGTAGGTA
CGGGATCATCTTGTGAAAGTCGCCCCGTTGGACTGTGCGTGAACGGGGCC
ACCATAGATGATGTCGTGCTGTTGGTGTGGCGCAGCACAATGAAGATCAT
CGCCACCGCCGTTTCCAGAACTACCCCCACTGTCGCCGCCACTACCATCG
TCACGTCCGCCACCCAAGACCCAACACCCGCGCTACTAGCTCGCACCATA
GCCAGCAGTGTGGCGATAGCAATAACGATCGCTCATTCCTACAACTTATG
TTTTCGTCGCAGCTCTGTTGTGTACGATTCCTCGTCCTCGAGTATACAAC
AGGCGTCTAGAAAAGCAGGCACGCGACGACTCTTCGCGTGGTACTTTCCA
GGCATCCTCCCGGTCCCACTCGCCTAACACAAGCGTCCCCTCCACTCCGA
TGCTATCACAAGGCATGCCCATCACGTACACCGAAGCGCCACCTCGCTAT
CTCGACCCTACCGGTATGATTTAACAGAGTCAGGACCCGATGCAGCTGTT
GCTGCTGGGGCGTTTCTTCCCCTTACCATTGTACCGCCGAACGCGTCGAC
CGAATTCCTCGCACGCCCCTCCCTCGCCGTGCTTCGCAGGCGAACTTCGC
GCCCCCGGGCAAGACCATCGCGTCCTTCTGCTCCCGACACAAGTCGCCAG
TCATGGTCGCCCTCAACGCCCGACGCTGCGAAGGCGACAACTGCACCAAG
ATCGCCTCCTTCGGCGTGGAGGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs888:5377..11100+

>mRNA_H-canaliculatus_M_contigs888.1.1 ID=mRNA_H-canaliculatus_M_contigs888.1.1|Name=mRNA_H-canaliculatus_M_contigs888.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=384bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs888:5377..11100+ (Hapterophycus canaliculatus Oshoro7m male)
TGTGGCATCCCGGTCTGCACAAAAAACCCGTACTTCGGCTGGCTGGGCGG
CAAGGCGAACTTCTGCGTTGCGCACAAGGAACCAGGGATGGTGGACGTGA
AGAACAAGCGTTGCGAGGGCGAGGGGTGCCTGAAGAGGGGACTGTTTGGC
TTCAGCGGGGAGAAAGCGCGCTTCTGCAGCGCTCACCGCCTCCACGGCAT
GGTGGACCTCAAGAACAAGCGGTGCAAGTGGGCCGGCTGCCCGAAGCAGG
CGAACTTCGCGCCCCCGGGCAAGACCATCGCGTCCTTCTGCTCCCGACAC
AAGTCGCCAGTCATGGTCGCCCTCAACGCCCGACGCTGCGAAGGCGACAA
CTGCACCAAGATCGCCTCCTTCGGCGTGGAGGGG
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