mRNA_H-canaliculatus_M_contigs8870.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8870.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8870.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8870.1.1 vs.
Match: Fimbrin (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBI9_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 2.030e-41
Identity = 77/91 (84.62%), Postives = 82/91 (90.11%), Query Frame = 1
Query:   19 LYQVMDRIQPGAVVWKRVNLAPKNRFKKVENGNYVIEIAKVMGLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQASSS*GQEDRGP 291
            + +VMDRIQPG VVWKRVN+APKNRFKKVENGNYVI+IAKVMGLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQA S  G+    P
Sbjct:  495 ILKVMDRIQPGVVVWKRVNIAPKNRFKKVENGNYVIDIAKVMGLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQALSKKGKRIEDP 585          
BLAST of mRNA_H-canaliculatus_M_contigs8870.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ18_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 1.240e-40
Identity = 74/80 (92.50%), Postives = 78/80 (97.50%), Query Frame = 1
Query:   19 LYQVMDRIQPGAVVWKRVNLAPKNRFKKVENGNYVIEIAKVMGLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQA 258
            + +VMDRIQPG VVWKRVN+APKNRFKKVENGNYVI+IAKVMGLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQA
Sbjct:  442 ILKVMDRIQPGVVVWKRVNIAPKNRFKKVENGNYVIDIAKVMGLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQA 521          
BLAST of mRNA_H-canaliculatus_M_contigs8870.1.1 vs.
Match: Actin (binding protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF36_9STRA)

HSP 1 Score: 141 bits (355), Expect = 9.770e-37
Identity = 69/83 (83.13%), Postives = 75/83 (90.36%), Query Frame = 1
Query:   19 LYQVMDRIQPGAVVWKRVNLAPKNRFKKVENGNYVIEIAKVMGLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQASSS 267
            + +VMD IQPG V WK+VN+APKNR+KKVENGNYVIEIAK M LTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQ  S+
Sbjct:  425 ILKVMDAIQPGVVNWKKVNVAPKNRYKKVENGNYVIEIAKAMRLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQQLST 507          
BLAST of mRNA_H-canaliculatus_M_contigs8870.1.1 vs.
Match: Actin (bundling protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV37_9STRA)

HSP 1 Score: 137 bits (344), Expect = 4.380e-35
Identity = 68/82 (82.93%), Postives = 72/82 (87.80%), Query Frame = 1
Query:   28 VMDRIQPGAVVWKRVNLAPKNRFKKVENGNYVIEIAKVMGLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQASSS*G 273
            VMD IQPG V WKRVN  PKNR+KK+ENGNYVIE+AK M LTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQ  S+ G
Sbjct:  432 VMDTIQPGLVQWKRVNKEPKNRYKKLENGNYVIELAKAMQLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQHLSTTG 513          
BLAST of mRNA_H-canaliculatus_M_contigs8870.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CR49_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.080e-25
Identity = 40/76 (52.63%), Postives = 61/76 (80.26%), Query Frame = 1
Query:   31 MDRIQPGAVVWKRVNLAPKNRFKKVENGNYVIEIAKVMGLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQA 258
            MD+++PG V W+RVNL+P+N++K++ENGNYV+E+ + M  T+V +GG DI+DG  K+  A++WQLMR HTL L+ +
Sbjct:    1 MDKLEPGIVDWRRVNLSPRNKYKRIENGNYVVELGRAMEFTLVGIGGTDIVDGYAKLVHALLWQLMRYHTLKLISS 76          
BLAST of mRNA_H-canaliculatus_M_contigs8870.1.1 vs.
Match: FIM3 (protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VU38_SYMMI)

HSP 1 Score: 100 bits (250), Expect = 1.770e-22
Identity = 45/86 (52.33%), Postives = 64/86 (74.42%), Query Frame = 1
Query:    1 VSSSWYLYQVMDRIQPGAVVWKRVNLAPKNRFKKVENGNYVIEIAKVMGLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQA 258
            +S  + + Q+ D +QPG V WK+ N  PK+ +KKVEN NY +EI + MG ++VN+GGLDI+  ++K+ LAI+WQLMRRHTL +L A
Sbjct:  254 LSDGFVILQLEDSVQPGVVNWKKANKDPKSVYKKVENCNYAVEIGRSMGFSMVNIGGLDIVHKDKKLILAIIWQLMRRHTLKVLAA 339          
BLAST of mRNA_H-canaliculatus_M_contigs8870.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MHY3_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.240e-22
Identity = 42/84 (50.00%), Postives = 62/84 (73.81%), Query Frame = 1
Query:    1 VSSSWYLYQVMDRIQPGAVVWKRVNLAPKNRFKKVENGNYVIEIAKVMGLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLL 252
            +S+   + +VM+R+Q G VVWK+ +  P+NR   ++N NY   +AK M L +VN+GG+DI DGN+K+ LAIMWQLMRR T+++L
Sbjct:   16 LSNGLPILKVMERMQEGLVVWKKAHADPQNRIHTIDNCNYACTLAKKMDLVLVNIGGMDIADGNQKLILAIMWQLMRRFTVDML 99          
BLAST of mRNA_H-canaliculatus_M_contigs8870.1.1 vs.
Match: Fimbrin ((Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GDA8_9CRUS)

HSP 1 Score: 94.0 bits (232), Expect = 3.860e-20
Identity = 39/78 (50.00%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   19 LYQVMDRIQPGAVVWKRVNLAPKNRFKKVENGNYVIEIAKVMGLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLL 252
            L ++MD I+PG V WK V   P N+FKKV N NY + + K M  ++V +GG+DI+DGN+K+ LA++WQLMR H + +L
Sbjct:  200 LLKIMDHIEPGIVSWKNVEKKPNNKFKKVANTNYAVLVGKQMNFSLVGIGGIDIVDGNQKLVLALVWQLMRYHAVKIL 277          
BLAST of mRNA_H-canaliculatus_M_contigs8870.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E1W1_9FUNG)

HSP 1 Score: 94.7 bits (234), Expect = 4.210e-20
Identity = 44/88 (50.00%), Postives = 63/88 (71.59%), Query Frame = 1
Query:   19 LYQVMDRIQPGAVVWKRVNLAP-KNRFKKVENGNYVIEIAKVMGLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQASSS*GQE 279
            L   MD + PG+V WK+VN AP  ++FKKVEN NYV+ + K M  ++V +GG+DI DGN+ +TLA++WQLMR H +  L+  S+ G+E
Sbjct:  599 LLHAMDTVHPGSVDWKKVNKAPVSSKFKKVENCNYVVVLGKSMKFSLVGIGGVDITDGNKTLTLALVWQLMREHVIQTLRTLSTGGRE 686          
BLAST of mRNA_H-canaliculatus_M_contigs8870.1.1 vs.
Match: Actin (bundling protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VCL8_NAEGR)

HSP 1 Score: 93.2 bits (230), Expect = 1.260e-19
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 1
Query:   19 LYQVMDRIQPGAVVWKRVNLAPKNRFKKVENGNYVIEIAKVMGLTVVNVGGLDIIDGNRKMTLAIMWQLMRRHTLNLLQA 258
            L +V D+++PG V WKRV+  PKNR++ +EN NY +++AK      VNVGG DI DGN+K+ L ++WQLMRR  L+ L+A
Sbjct:  325 LLKVFDKVKPGCVEWKRVSNPPKNRYQAIENTNYCVDLAKQFKFNTVNVGGTDIADGNKKIILGLIWQLMRRSLLDTLKA 404          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8870.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Fimbrin2.030e-4184.62n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
Uncharacterized1.240e-4092.50protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Actin9.770e-3783.13binding protein (Fragment) n=1 Tax=Tribonema minus... [more]
Actin4.380e-3582.93bundling protein n=1 Tax=Tribonema minus TaxID=303... [more]
Hypothetical2.080e-2552.63protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014... [more]
FIM31.770e-2252.33protein n=1 Tax=Symbiodinium microadriaticum TaxID... [more]
Hypothetical2.240e-2250.00protein (Fragment) n=1 Tax=Dictyocha speculum TaxI... [more]
Fimbrin3.860e-2050.00(Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452... [more]
Uncharacterized4.210e-2050.00protein n=1 Tax=Powellomyces hirtus TaxID=109895 R... [more]
Actin1.260e-1951.25bundling protein n=1 Tax=Naegleria gruberi TaxID=5... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8870contigH-canaliculatus_M_contigs8870:298..1816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LBI9
PFAMsCH,EF-hand_7
Model size382
Max annot lvl2759|Eukaryota
KEGG koko:K17275,ko:K17276
Hectar predicted targeting categoryother localisation
Exons3
Evalue8.18e-42
EggNOG OGsCOG5069@1|root,KOG0046@2759|Eukaryota
Descriptionactin filament network formation
Cds size240
COG categoryZ
BRITEko00000,ko04147,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854177.8137057-UTR-H-canaliculatus_M_contigs8870:297..3271696854177.8137057-UTR-H-canaliculatus_M_contigs8870:297..327Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8870 298..327 +
1696854177.8607275-UTR-H-canaliculatus_M_contigs8870:1704..18161696854177.8607275-UTR-H-canaliculatus_M_contigs8870:1704..1816Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8870 1705..1816 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854177.8258426-CDS-H-canaliculatus_M_contigs8870:327..4351696854177.8258426-CDS-H-canaliculatus_M_contigs8870:327..435Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8870 328..435 +
1696854177.8374553-CDS-H-canaliculatus_M_contigs8870:950..10801696854177.8374553-CDS-H-canaliculatus_M_contigs8870:950..1080Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8870 951..1080 +
1696854177.8488626-CDS-H-canaliculatus_M_contigs8870:1702..17041696854177.8488626-CDS-H-canaliculatus_M_contigs8870:1702..1704Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8870 1703..1704 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8870.1.1prot_H-canaliculatus_M_contigs8870.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8870 328..1704 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8870.1.1

>prot_H-canaliculatus_M_contigs8870.1.1 ID=prot_H-canaliculatus_M_contigs8870.1.1|Name=mRNA_H-canaliculatus_M_contigs8870.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=80bp
MDRIQPGAVVWKRVNLAPKNRFKKVENGNYVIEIAKVMGLTVVNVGGLDI
IDGNRKMTLAIMWQLMRRHTLNLLQASSS*
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mRNA from alignment at H-canaliculatus_M_contigs8870:298..1816+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8870.1.1 ID=mRNA_H-canaliculatus_M_contigs8870.1.1|Name=mRNA_H-canaliculatus_M_contigs8870.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1519bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8870:298..1816+ (Hapterophycus canaliculatus Oshoro7m male)
GTTTCTTCGTCGTGGTACTTGTATCAGGTAATGGACCGTATCCAGCCCGG CGCGGTTGTGTGGAAGCGTGTCAACCTCGCCCCCAAGAACCGGTTCAAGA AGGTGGAAAACGGAAACTACGTGATCGAAATCGCAAAGGTGCGTTATCGC CTGAAATCTCCTCCGCAGGCAGATGACCAAGACCAACATCATGCTGAACG ACAGGGTTTGGTCTGTTCGTGGGTGATGCGGGGGTGCGTGCGTGCTCGTC GCAGCCTGGTTTTCGTCGGTGCCAAGATTCCGACAAAAAAGAGAGAGGAA GTCGCGACTTTTCGCCCTCTTGTTTGAGACACTTTGTGGACGCGCGCCGT TGTCGTTCAAAGTGTGCGTTAGTTCTTCGTGCTGTAATGGATGAGTTGTC GGCGTCGAGCGTGCGCTCATGAAGAGCGCGTGGGCTTTGTCAAGCGCTTG CAAAGAAGACTCACACGCTGCTACTTTCTGTCTTCTGTATCAGGGGTCAG TTGCTCCTGTTTGTTGGATTCTCATCGTCGCCCGCCGATGATCGAACGGT GATTGTAGTCCTTGTTGATGGCTACGATTCCGGCTACTCACGCATGAGGA TGGATCTGATTGAGATGAATCTCGCCCGTGCGCAACCGATCATGTCGACG AAGGTGATGGGTCTGACGGTGGTGAACGTGGGGGGATTGGACATCATCGA CGGCAACAGAAAAATGACGCTGGCCATCATGTGGCAGCTCATGCGCCGGC ACACCCTCAACCTCCTACAGGCGAGTTCCTCTTGTCGCTTACTTTTTGGA CAGGATGCTTGCCGTTCTTGCTGGTGCCCGTGTAGGAGCGTTGATGCTAC AGGTATTCGACTGAAAAAAAAATTCAGGTGCCCTTCCATGCAATATCTCG CCTGCGTGCCAGATCGGGCTGGGTGGGCGGTAGATTCCGTGTGACACGTT GTTTTCATGCGATTCTTTGCCGTACCTTTCGATCTCGCTTGCCCTTGTGT GGACGTGAATATTTTGATGTTTTAGTGGACTGTCTACGCCCACGGAACAA AACCCACCCACCAAAGAGTAGGGAGGCTCGGTCTCCTCTCGTCTCGCAGA CGCTCGTAGCGGGCCTCATCGCTCTGTGAGTCGTTCGTTCTCTACATGGT TGCTTTCTCTCGGAGATGCATCTCCTCGCGTGCCACCACCTTCACGCTTG TCCGAGTTTTGGCTTTCGACCGAAGCCGTCGTGTGTCTCGACCCATTTCA TTTCATGGCGCCTTCACGATTTTCCAGCTCTTTTGACCGTTCTTTCCAAT GCCGTCGTGTGTCGTAACGCCGTCTTCAAAAATATCGGGTCCGATCGCGT CATCCCTGGCGGGACTGCAAACACCACGCCACTCAATCCAAAGGCTCTGT CGAAGAAGGGCAAGAGGATAGAGGACCCTCAGATCGTGGCCTGGGCCAAC TCCAAGGTTGAGGGGTCCAAGATTCGCAGCTTCGGGGACCCTTCGCTGTC CACGGGCGTGTTCTTACTC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8870:298..1816+

>mRNA_H-canaliculatus_M_contigs8870.1.1 ID=mRNA_H-canaliculatus_M_contigs8870.1.1|Name=mRNA_H-canaliculatus_M_contigs8870.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=240bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8870:298..1816+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGACCGTATCCAGCCCGGCGCGGTTGTGTGGAAGCGTGTCAACCTCGC
CCCCAAGAACCGGTTCAAGAAGGTGGAAAACGGAAACTACGTGATCGAAA
TCGCAAAGGTGATGGGTCTGACGGTGGTGAACGTGGGGGGATTGGACATC
ATCGACGGCAACAGAAAAATGACGCTGGCCATCATGTGGCAGCTCATGCG
CCGGCACACCCTCAACCTCCTACAGGCGAGTTCCTCTTAA
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