mRNA_H-canaliculatus_M_contigs8811.1.2 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8811.1.2
Unique NamemRNA_H-canaliculatus_M_contigs8811.1.2
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8811.1.2 vs.
Match: CBF (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ6_ECTSI)

HSP 1 Score: 447 bits (1151), Expect = 2.270e-144
Identity = 242/284 (85.21%), Postives = 255/284 (89.79%), Query Frame = 1
Query:    1 GASATLPPAVTAQARAAGKALLEAEVAAWAAQRARHASGDDKWVEQVLRGGTLSDKVAALTLQVQESPVHRLSVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDARRLVAFEARPLMQALAAVEGGGVGGQXXXXXXXKGSSSGAXXQGVSSPGGKAAGKALLMWYFEDQILTRFYRMVGAIEAGSRDTVENFKRFSLEAAKDLLEAKPEAEGRLLALLVNKLGDPDRKISSKVIHLLQRLLMKHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQV 852
            G+S+T  PA+T+QARAAGKALLEAEVAAW AQR RHASGDDKWV QVLRGGTLSDKVAALTLQVQESPVHRL+VLDGLLDLGLKKERRTAQMALEALKDLFITNLLPD+R+LV FE RPL+QALA+V   G  GQ        G S     +GV+SPGGKAAGKALLMWY+EDQIL RFYR+VGAIEAGSRDTVENFKRFSLEAAKDLLEAKPE EGRLLALLVNKLGDPDRKISSKVIHLLQRLL KHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQV
Sbjct:  221 GSSSTASPAMTSQARAAGKALLEAEVAAWTAQRERHASGDDKWVAQVLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDSRKLVPFETRPLLQALASVTEEGNKGQGGG-----GDSVPGGGRGVNSPGGKAAGKALLMWYYEDQILNRFYRLVGAIEAGSRDTVENFKRFSLEAAKDLLEAKPEGEGRLLALLVNKLGDPDRKISSKVIHLLQRLLAKHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQV 499          
BLAST of mRNA_H-canaliculatus_M_contigs8811.1.2 vs.
Match: Reverse (transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C9_9PHAE)

HSP 1 Score: 308 bits (788), Expect = 4.450e-92
Identity = 181/246 (73.58%), Postives = 192/246 (78.05%), Query Frame = 1
Query:   28 VTAQARAAGKALLEAEVAAWAAQRARHASGDDKWVEQV------------------LRGGTLSDKVAALTLQVQESPVHRLSVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDARRLVAFEARPLMQALAAVEGGGVGGQXXXXXXXKGSSSGAXXQGVSSPGGKAAGKALLMWYFEDQILTRFYRMVGAIEAGSRDTVENFKRFSLEAAKDLLEAKPEAEGRLLALLVNKLGDPDRKISSK 711
            +T+QARAAGKALLEAEVAAW AQR RHASGDDKWV QV                  LRGGTLSDKVAALTLQVQESPVHRL+VLDGLLDLGLKKERRTAQMALEALKDLFITNLLPD+R+LV FE+RPL+QALA+V   G  GQ        G S     +GV+ P GKAAGKALLMW         F R+VGAIEAGSRDTVENFKRFSLEAAKDLLEAKPE EGRLLALLVNKLGDPDRKISSK
Sbjct:    1 MTSQARAAGKALLEAEVAAWTAQRERHASGDDKWVAQVQSLGKHMELRRIVPRTWVLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDSRKLVPFESRPLLQALASVTEEGNKGQGGG-----GESVPEGGRGVNGPRGKAAGKALLMW---------FSRLVGAIEAGSRDTVENFKRFSLEAAKDLLEAKPEGEGRLLALLVNKLGDPDRKISSK 232          
BLAST of mRNA_H-canaliculatus_M_contigs8811.1.2 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC94_9STRA)

HSP 1 Score: 229 bits (585), Expect = 9.750e-65
Identity = 145/331 (43.81%), Postives = 189/331 (57.10%), Query Frame = 1
Query:   19 PPAVTAQARAAGKALLEAEVAAWAAQRARHASGDDKWVEQVLRGGTLSDKVAALTLQVQESPVHRLSVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDARRLVAFEARPLMQALAAVEGGGVGGQXXXXXXXKGSSSGAXXQGVSSPGGKAAGKALLMWYFEDQILTRFYRMVGAIEAGSR-----------------------DTVENFKRFSLEAAKDLLEAKPEAEGRLLALLVNKLGDPDRKISSKVIHLLQRLLMKH----PAMKG--------------------------VVVREVQQYLHRPGLQPKAVYAGIIFLNQV 852
            P  V  + R A  ALL  EVAAW     +  +GDD+++ QVL+ GTLSDK++ALT++ +ESPVHRL+ LD L++L  K +RRTAQMA EALKDLFI++LLPD RRLV F  RPL+Q                             +  +    + A K LLMWYFE ++L R+  +V A++A ++                       D+V N KR  +EAA+DLLEAKP  E +LLA+LVNK GDPDRK+++K IHLLQ  L +      AM+G                          VVVREVQQYLHRPGL PKA+YAG++FL+QV
Sbjct:  199 PAEVVRRLRDAAAALLAKEVAAWDHGAEKRQTGDDRYLSQVLKSGTLSDKISALTMRCKESPVHRLADLDKLVELATKHDRRTAQMAQEALKDLFISDLLPDERRLVPFRERPLLQ----------------------------FEEWAPNFKEQAAKTLLMWYFEGELLRRYGALVTALDAATKVRRYLSVLRLGGGWVAALHAATKDSVSNTKRSGMEAARDLLEAKPTGEAQLLAILVNKFGDPDRKVANKGIHLLQHALPQALNELSAMRGIVREQVLNKHXXXXXXXXXXXXXXXXVVVREVQQYLHRPGLAPKALYAGVVFLSQV 501          
BLAST of mRNA_H-canaliculatus_M_contigs8811.1.2 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GVG6_9STRA)

HSP 1 Score: 194 bits (494), Expect = 3.670e-57
Identity = 108/258 (41.86%), Postives = 155/258 (60.08%), Query Frame = 1
Query:   85 WAAQRARHASGDDKWVEQVLRGGTLSDKVAALTLQVQESPVHRLSVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDARRLVAFEARPLMQALAAVEGGGVGGQXXXXXXXKGSSSGAXXQGVSSPGGKAAGKALLMWYFEDQILTRFYRMVGAIEAGSRDTVENFKRFSLEAAKDLLEAKPEAEGRLLALLVNKLGDPDRKISSKVIHLLQRLLMKHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQVRI 858
            W+A+R  ++ GD+++++Q+LR GTL+D++AA+TL+VQ+SP+H LS LDGLL LG K   R +++A EAL DLF  NLLP  R+L+A E+RPL+ + A  E                                      LMW FE ++  RF   +  +    +D+  + +R  L+ A DLL  + E EG L++L+VNKLGDPDRKI+S+ +  LQ+LL KHP M  VVV+  +  L R  LQP+A Y  I+FLNQVR+
Sbjct:   57 WSAKRNANSDGDERFMDQMLRSGTLADRIAAMTLRVQQSPLHELSSLDGLLKLGQKGNHRGSRLAFEALCDLFKENLLPADRQLIALESRPLLSSEATEE------------------------------------HKLMWGFEAELKARFSLFLDQLSLALKDSTTDLRRIGLDCAADLLTHRSEQEGTLMSLVVNKLGDPDRKIASRAVLKLQQLLQKHPNMTKVVVQYTKGLLGRKNLQPRATYNAIVFLNQVRL 278          
BLAST of mRNA_H-canaliculatus_M_contigs8811.1.2 vs.
Match: CBF (domain-containing protein (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699YNK8_HAELA)

HSP 1 Score: 195 bits (496), Expect = 3.880e-56
Identity = 116/269 (43.12%), Postives = 160/269 (59.48%), Query Frame = 1
Query:   52 GKALLEAEVAAWAAQRARHASGDDKWVEQVLRGGTLSDKVAALTLQVQESPVHRLSVLDGLLDLGLKKE--RRTAQMALEALKDLFITNLLPDARRLVAFEARPLMQALAAVEGGGVGGQXXXXXXXKGSSSGAXXQGVSSPGGKAAGKALLMWYFEDQILTRFYRMVGAIEAGSRDTVENFKRFSLEAAKDLLEAKPEAEGRLLALLVNKLGDPDRKISSKVIHLLQRLLMKHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQV 852
            G+ +L  E A++  +  +  + D KW++QV R GT +DKVAA+TLQVQES V  L+ LD LL    +++  R   + ALEAL++LF+T LLPD RRL   E++PL                                  S P GK   K LL W+ EDQI  R+   VGA+E  SRD +E  K  + +A   LL  KPEAE RLL  LVNKLGDP RK++SK  +LL +LL++HP MK VV+RE+++++ RPGLQ +A Y  ++F+NQ+
Sbjct:  131 GEQMLANEAASFEREMQKRNAADYKWLQQVKRQGTTADKVAAITLQVQESAVANLAGLDMLLGWVTRRQGGREVVRQALEALQELFLTVLLPDGRRLKHLESQPL---------------------------------ASLPSGKEGAKYLLWWFLEDQIKVRYGLFVGALEECSRDNLEFLKDKATKALYTLLVKKPEAEARLLGALVNKLGDPARKLASKAGYLLSQLLLQHPVMKPVVLRELERFVFRPGLQDRARYYAVVFMNQL 366          
BLAST of mRNA_H-canaliculatus_M_contigs8811.1.2 vs.
Match: CBF (domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CW61_9STRA)

HSP 1 Score: 201 bits (512), Expect = 4.250e-55
Identity = 119/267 (44.57%), Postives = 157/267 (58.80%), Query Frame = 1
Query:   52 GKALLEAEVAAWAAQRARHASGDDKWVEQVLRGGTLSDKVAALTLQVQESPVHRLSVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDARRLVAFEARPLMQALAAVEGGGVGGQXXXXXXXKGSSSGAXXQGVSSPGGKAAGKALLMWYFEDQILTRFYRMVGAIEAGSRDTVENFKRFSLEAAKDLLEAKPEAEGRLLALLVNKLGDPDRKISSKVIHLLQRLLMKHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQV 852
            G+A+L A    + A+R+R    D KW E++LR GTLSDKVAALTL VQE+P+ RL  LD LL L  K +RR AQMA+EAL+DL   NLLP  R+LV +  +       A  G                          S         L + +FEDQ+  R   ++  +E  + DTV +FKRF+L     LL+ +PE E RLL++LVNKLGD ++K++    +LL+RLL  HPAMK VV REVQQ+LHRP LQP+ +Y GI FL Q+
Sbjct:  132 GEAVLTAAQTLFEARRSRKLDQDQKWTEKILRQGTLSDKVAALTLLVQEAPLFRLRTLDALLALAQKADRRCAQMAIEALQDLLEHNLLPPERKLVPWARQDEASLPPAAAG-------------------------DSEQRARREACLALRFFEDQLKQRVAVLIDRLEKATHDTVTSFKRFALTGVAGLLQGRPEQEERLLSILVNKLGDVEKKVAPHAAYLLRRLLAAHPAMKVVVAREVQQFLHRPNLQPRPLYNGISFLGQL 373          
BLAST of mRNA_H-canaliculatus_M_contigs8811.1.2 vs.
Match: CBF (domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXB7_9STRA)

HSP 1 Score: 197 bits (502), Expect = 8.100e-54
Identity = 122/281 (43.42%), Postives = 160/281 (56.94%), Query Frame = 1
Query:   10 ATLPPAVTAQARAAGKALLEAEVAAWAAQRARHASGDDKWVEQVLRGGTLSDKVAALTLQVQESPVHRLSVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDARRLVAFEARPLMQALAAVEGGGVGGQXXXXXXXKGSSSGAXXQGVSSPGGKAAGKALLMWYFEDQILTRFYRMVGAIEAGSRDTVENFKRFSLEAAKDLLEAKPEAEGRLLALLVNKLGDPDRKISSKVIHLLQRLLMKHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQV 852
            A LP A    A+   + LLEAEVA + AQ++   S DDK++  ++R GTL+D+VAALTL VQ +P H L+ L  L+ +  KK RR + MA+++LKDLFI NLLPD RRL  F    L    A  E                                       +W+FE  + T F ++VG + +G  D V+N KR  + AA  LL AKPE E  LLA+LVNKLGDPDRKI+S V+  LQ LL +HPAMK VVV EV++ L RP +  +  Y  I+FLNQ+
Sbjct:  113 AQLPAAEAEAAKRHAQRLLEAEVARFEAQKSARLSSDDKYLATMMRSGTLADRVAALTLTVQSAPFHNLARLSQLITMASKKARRESMMAVDSLKDLFINNLLPDDRRLRFFHQHALAHPDATDE------------------------------------HRALWFFEHCLKTAFAQLVGVLASGMDDAVDNHKRACIRAASALLAAKPEQEAVLLAMLVNKLGDPDRKIASYVLKTLQELLQEHPAMKRVVVDEVERVLTRPQVSDRTKYNAILFLNQM 357          
BLAST of mRNA_H-canaliculatus_M_contigs8811.1.2 vs.
Match: CBF (domain-containing protein (Fragment) n=3 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4D0A4_9CHLO)

HSP 1 Score: 191 bits (485), Expect = 2.210e-51
Identity = 115/272 (42.28%), Postives = 156/272 (57.35%), Query Frame = 1
Query:   43 RAAGKALLEAEVAAWAAQRARHASGDDKWVEQVLRGGTLSDKVAALTLQVQESPVHRLSVLDGLLDLGLKKE--RRTAQMALEALKDLFITNLLPDARRLVAFEARPLMQALAAVEGGGVGGQXXXXXXXKGSSSGAXXQGVSSPGGKAAGKALLMWYFEDQILTRFYRMVGAIEAGSRDTVENFKRFSLEAAKDLLEAKPEAEGRLLALLVNKLGDPDRKISSKVIHLLQRLLMKHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQV 852
            RAA +AL++AE AA+  +  R   GD KW++QV R GT +DK+AA TL VQES V  +  LD L+ L  K+   +   + ALEAL++LF   LLPD R+L   E +PL                                    P G+   K LL+W+ ED +  R+   V A+E  S++ +E  K  S+    DLL +KPE E RLLA LVNKLGDP R+++SK ++LL +LL  HP MK VVVREV++++ RPGL  KA Y  +IFLNQ+
Sbjct:  215 RAAAEALMDAEAAAFEKEVLRRNPGDAKWLQQVRRAGTSTDKLAAATLLVQESVVSNMKALDQLVSLATKRSGGKELVRQALEALQELFTNALLPD-RKLKFLEQQPLQDL---------------------------------PPGRDGEKLLLLWWTEDCVKRRYAEFVTALEEHSKENLEFLKEKSMRVMADLLSSKPECEARLLAALVNKLGDPSRQVASKAVYLLMQLLSSHPVMKPVVVREVERFVFRPGLADKARYYAVIFLNQI 452          
BLAST of mRNA_H-canaliculatus_M_contigs8811.1.2 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GN86_9STRA)

HSP 1 Score: 185 bits (470), Expect = 2.520e-51
Identity = 105/248 (42.34%), Postives = 150/248 (60.48%), Query Frame = 1
Query:  115 GDDKWVEQVLRGGTLSDKVAALTLQVQESPVHRLSVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDARRLVAFEARPLMQALAAVEGGGVGGQXXXXXXXKGSSSGAXXQGVSSPGGKAAGKALLMWYFEDQILTRFYRMVGAIEAGSRDTVENFKRFSLEAAKDLLEAKPEAEGRLLALLVNKLGDPDRKISSKVIHLLQRLLMKHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQVRI 858
            GD KW+  +++ GT+SDKVAA+ L+VQ SP H L  LD L+ + LKKE+R+AQ+A+EALKDLF+ NLLP+ R+L A +   L  A   +                                     ALL+W FE Q+  R+ +++ A++AG +  V+ FKR  L+   +LL  KPE E RLL +LVNKLGDP R   SK +  L+ ++  HPAMK VVVREV+Q+L+RP L+ + ++ GII L+QV++
Sbjct:   79 GDLKWMNDMIKSGTMSDKVAAMALKVQGSPFHELETLDTLIGMALKKEQRSAQLAIEALKDLFVNNLLPE-RQLRAMDNNSLNHANMTLS-----------------------------------TALLVW-FEAQLKNRYAKVLDALDAGLKSNVDFFKRECLQTISELLIGKPEQEARLLEMLVNKLGDPSRATCSKAVEALKTVVRAHPAMKIVVVREVRQFLYRPNLKIRPIFNGIILLSQVQL 289          
BLAST of mRNA_H-canaliculatus_M_contigs8811.1.2 vs.
Match: CBF (domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GDK0_PHYRM)

HSP 1 Score: 190 bits (483), Expect = 2.820e-51
Identity = 111/264 (42.05%), Postives = 156/264 (59.09%), Query Frame = 1
Query:   61 LLEAEVAAWAAQRARHASGDDKWVEQVLRGGTLSDKVAALTLQVQESPVHRLSVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDARRLVAFEARPLMQALAAVEGGGVGGQXXXXXXXKGSSSGAXXQGVSSPGGKAAGKALLMWYFEDQILTRFYRMVGAIEAGSRDTVENFKRFSLEAAKDLLEAKPEAEGRLLALLVNKLGDPDRKISSKVIHLLQRLLMKHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQV 852
            LLEAEVA + A ++   S DDK++  +++ GTLSD+VAALTL  Q SP+H L  +  L+ +  KK RR + MA+++LKDLF+ NLLPDA +L  F   PL  A                                    +A+   L++W+FE  + T + ++ G + AG  D V++ KR  L A+  LL AKPE E  LLA+LVNKLGDPDRKI++ +  +LQ LL +HPAMK VVV EV++ L RP +  +A Y  ++FLNQ+
Sbjct:   86 LLEAEVARFDAHKSGKMSSDDKYLATMMKSGTLSDRVAALTLTSQSSPLHSLLRVGQLITMASKKARRESLMAVDSLKDLFLNNLLPDAAKLRFFHQHPLQAA------------------------------------QASPAHLVLWFFEHCLKTAYTQLTGVLAAGMDDAVDSHKRACLRASNALLRAKPEQEAVLLAMLVNKLGDPDRKIAAYLHRMLQDLLREHPAMKRVVVDEVERLLTRPKVSDRAKYNAVLFLNQI 313          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8811.1.2 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
CBF2.270e-14485.21domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Reverse4.450e-9273.58transcriptase domain-containing protein n=4 Tax=Ec... [more]
Uncharacterized9.750e-6543.81protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical3.670e-5741.86protein (Fragment) n=1 Tax=Dictyocha speculum TaxI... [more]
CBF3.880e-5643.12domain-containing protein (Fragment) n=1 Tax=Haema... [more]
CBF4.250e-5544.57domain-containing protein n=2 Tax=Monodopsidaceae ... [more]
CBF8.100e-5443.42domain-containing protein n=1 Tax=Pythium brassicu... [more]
CBF2.210e-5142.28domain-containing protein (Fragment) n=3 Tax=Volvo... [more]
Hypothetical2.520e-5142.34protein (Fragment) n=2 Tax=Spumella elongata TaxID... [more]
CBF2.820e-5142.05domain-containing protein n=1 Tax=Phytophthora ram... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8811contigH-canaliculatus_M_contigs8811:699..4732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LPZ6
Preferred nameCEBPZ
PFAMsAAA_5,CBF
Model size858
Max annot lvl2759|Eukaryota
KEGG koko:K14572,ko:K14832
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001077,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003723,GO:0003729,GO:0003824,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005911,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006364,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009526,GO:0009536,GO:0009553,GO:0009889,GO:0009891,GO:0009893,GO:0009941,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030684,GO:0030686,GO:0030687,GO:0030689,GO:0030690,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040008,GO:0042254,GO:0042255,GO:0042273,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046872,GO:0048229,GO:0048518,GO:0048522,GO:0048638,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:1990904,GO:2000112,GO:2001141
Exons6
Evalue3.73e-145
EggNOG OGsCOG5271@1|root,COG5593@1|root,KOG1808@2759|Eukaryota,KOG2038@2759|Eukaryota
Descriptionribosome biogenesis
Cds size858
COG categoryJ
BRITEko00000,ko00001,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8811.1.2prot_H-canaliculatus_M_contigs8811.1.2Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8811 699..4732 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854174.5990033-CDS-H-canaliculatus_M_contigs8811:698..8451696854174.5990033-CDS-H-canaliculatus_M_contigs8811:698..845Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8811 699..845 -
1696854174.6114562-CDS-H-canaliculatus_M_contigs8811:1084..11771696854174.6114562-CDS-H-canaliculatus_M_contigs8811:1084..1177Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8811 1085..1177 -
1696854174.6228876-CDS-H-canaliculatus_M_contigs8811:1500..15961696854174.6228876-CDS-H-canaliculatus_M_contigs8811:1500..1596Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8811 1501..1596 -
1696854174.6339388-CDS-H-canaliculatus_M_contigs8811:2668..29231696854174.6339388-CDS-H-canaliculatus_M_contigs8811:2668..2923Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8811 2669..2923 -
1696854174.6484725-CDS-H-canaliculatus_M_contigs8811:3498..36271696854174.6484725-CDS-H-canaliculatus_M_contigs8811:3498..3627Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8811 3499..3627 -
1696854174.6607616-CDS-H-canaliculatus_M_contigs8811:4594..47321696854174.6607616-CDS-H-canaliculatus_M_contigs8811:4594..4732Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8811 4595..4732 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8811.1.2

>prot_H-canaliculatus_M_contigs8811.1.2 ID=prot_H-canaliculatus_M_contigs8811.1.2|Name=mRNA_H-canaliculatus_M_contigs8811.1.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=286bp
GASATLPPAVTAQARAAGKALLEAEVAAWAAQRARHASGDDKWVEQVLRG
GTLSDKVAALTLQVQESPVHRLSVLDGLLDLGLKKERRTAQMALEALKDL
FITNLLPDARRLVAFEARPLMQALAAVEGGGVGGQGGGTGGGKGSSSGAG
GQGVSSPGGKAAGKALLMWYFEDQILTRFYRMVGAIEAGSRDTVENFKRF
SLEAAKDLLEAKPEAEGRLLALLVNKLGDPDRKISSKVIHLLQRLLMKHP
AMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQVRI
back to top

mRNA from alignment at H-canaliculatus_M_contigs8811:699..4732-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8811.1.2 ID=mRNA_H-canaliculatus_M_contigs8811.1.2|Name=mRNA_H-canaliculatus_M_contigs8811.1.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=4034bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8811:699..4732- (Hapterophycus canaliculatus Oshoro7m male)
GGAGCATCTGCTACCCTCCCCCCCGCGGTGACCGCACAAGCACGGGCCGC GGGCAAAGCTCTGCTCGAGGCCGAGGTAGCCGCGTGGGCGGCGCAGAGGG CAAGGCACGCCAGCGGGGACGACAAGTGGGTCGAGCAGGTGGGTGGGTGC GGGAGTGCCCGGTGTGATGGTGTTGATCCTGTCGCTGCTGCTGCTGGGGT GGTTGTGGTTGTTCTTTCTGCTGCTGCTTGCTTGTTATGTTGCCAGGGTG GTGAGGTCGGCGGTGCTGATGGAATGGAAGGCATTGGTGGCGTTTCCGTG GTGTTCATGGTGATGACCGCGTTGGTCGTGGTCGTGTTGGTTGTGGAGAC TCCGATAGTTGTAGTAGTTGGGAATTACTGGTCGTACGACGGCACTAGGG GGGTCTGCACTGGTGATGCAGATGTGTTCGCAGGTATCGGTATCCGTGGC GCGCTCGATTCTCGTTGTGGCGCTACCGATAGCCACAACAATTGCGGTTG CGACGATGCTGCTGCTGTTGCCGTCCTTGCCGCCGCAAACTTGTAACAAT CGCATTGTAGGGAAGATAGACGGGCACACGTTAGCACCCTTGGTATTCAT CGCCCCTAGGGTAGGTGCCTACCCGTTTGGCTCCATCACAAACAAAACGG AGCTTGGCTTCCGCGACAAGGGTACTCAATAAAAGAGAAAAAAAAACGCG GTTGTATTTCGGAATTGCCGATGAGGCTCATTTATTTTGGCGCTGGCGGT GCTCAGCGTGCGTCCAGGCAGCGAAGACAGGAAGCTATGGGGGTTACGGT GGAGAAAGCACGGCAGCACAGGGGGGGCACGATGTGGCCGCGTTTCGTCC ACTCTTGGGATGATGTGAAGTTCGACGATGTGGCCGCGTTTCGTGCACCC TTGGTGATCTTGTGAGGTTTGAGACCACACCAGTGTTGACGTTACTGTCA TAATGCGATGGCAGCAGTAGCAGAAGCAGCAGCAAAAACAACAACAGCAC CACCACCACTACCACCACCACCAACAACAACAACAACAACAACAACAACA ACAACAGCGTTGGCACTAACTACGTCAGCTGAACCGGCCGGTCGTGGTGT TGTAGGTCCTGCGAGGCGGGACGCTGTCGGACAAGGTGGCGGCGCTGACG CTGCAGGTGCAGGAGAGCCCGGTGCACCGTCTTTCCGTATTGGACGGCCT GCTGGACCTCGGCCTCAAGAAAGAGAGGCGCACGGTGAGCCCTCCGTTTT CACGCCCACAACTTCGTGCCGGCGGCTGGTTTTCCCCTCCGGGTTGGCTT GTCTCTTGAGCTGCTTTTTTCCAGTTTTCCTCGGCCAAAGGAGAAGGCGC TGCTGCTCCATGCAGGAGGGTATCGCCGCCTCGCGCACCAGCCGGGTGTT CCCCGAGGACGAGTTTCTTTCCCCTGCCTTGGCGGTGGCCGAGCGAGCAC AGCGTAGGGCCCTCTGCTGGTCGTCGTCCCGTCGTCCGGCAACGCACGTT CCGGCGTGTCCTGGACGAGCTTTTCGCGCACTCGCTCTCGGGGTGCCCCT GCAGGCGCTTTTGCTTTCGCCCGAAGCTGCTGTTAGTATCCCCGCGGCGG CTTCCGTGAGCGCTTGTCTCGGCTGACTTGACCCATGGCCGACGAAGACT GGAAGTTTGGACGTCCTTTTTTTTGCTGCGGCAGCCGCCGCGGCCCTTCG CTTTTCATCGCGTCTTCCCTCCCGCGTCTACGGTTCTTTTCCGACCGTTT TCGCCTGCCTACCTGCCTGCCTGCCTGCCTTCTTGCCTTCTTCTCTTCGC CAAACCTAGGCCCAGATGGCCCTGGAGGCGCTCAAGGATCTGTTCATCAC CAACCTTCTTCCGGATGCAAGGAGGCTTGTGGCCTTCGAAGCGCGGCCCT TGATGCAGGCTCTCGCCGCGGTGGAAGGGGGCGGGGTGGGGGGCCAGGGC GGGGGCACCGGCGGAGGAAAGGGCAGCAGTTCGGGGGCGGGGGGACAGGG AGTTAGCAGCCCCGGTGGTAAGGCGGCTGGAAAGGCGCTGCTGATGTGGT ACTTCGAGGACCAGGTATGGCGTAGTGTTCGCTTGTCGTTGCGGCTGATG CCGTGCCGCCACCGCTGCTGTTGCTGTTGCTGTTACTGTATTATTGCTGT CGTTGTCGTTGCTGCTGCCTGCTTGTGCTGTTGCTGGTGCCATTATTTTT TTTTTCTCACTTGGCTCATCGCTAGCATGACCGCCCGCCGTAAGCGGTTT CTCTCTTCTTGCTCGGCGTGTTGCGCAAGAAGTAGGACAGCTGCGACGCG GTTCCTCCCGACGCACCTCGCCGTTCGAACCCGCCGTTTCGCCCAGAAGA GGGCCGCGGGCGCTCAGATTGTCGTGAAAAACACGGGGAAACGGATCCCA CGAAGAACGCCTTTACCATATTTTACAAAACCCCACCACCTCGTCCACGT AGACCAGCATCGGCAAGGCGGAAGGGCCAAAAACAAACACAAGAGTGCTA CCTTTTCACCCAATGCGGCCGCCAAGGACGCTGCCTCGACAGGCGTGACG CTAACACACGAGCGATACGCCACGACGCCAGGCATGCAGTAGTAGGAACG TCGATGGGCTCAGAGATGGGGCGTGTTCTTGCCCACGTGTCACGTGTAGG CGACAAGCACGCATACACACGGGACCTTCGGTCTACGATTTTATTTGATA TTTTTTAGGGCGCTTCCTCGGTAGCCGAGACGAGGTTCGTGTCGACGCCT CCCCCCCCTCCCTGGATTTTCCACGGCGCCCTCCTTGTTTCCCACCGATC TCCCGAGGAAACGGGTGGTGCTTTCCATCGTGTTTCTCTGTGCGAGGCTA AAGCGCACGCTTGTTAGAAAAGGGTACGCGAGCGTGTGTGCGTGTGCGTG TGTGTGTGCGTGTGCGTATGTGTGTGCGTGTGCGTGTGCGTGTGCGTGTG TGTGTGTGTGTGCGTGCGTGCGTGGGCGTTTGTCTTGTTTTTTATTTCCG GAAAACCTTCTGTCCTTTTATCCGCCGAAGAATGAAAATTCGCCACCTTG TCCGTCAGGTGTGGATGTTTCAGCGTGTGTCTCTCTGCGCATATTCCCCT GTTAACGTCTTCCTCCCCCGCCCCTTCCTTGCGTAGATCCTGACCAGATT CTACCGCATGGTCGGAGCGATCGAGGCCGGGTCAAGGGACACCGTGGAGA ACTTCAAGAGGTTCAGCCTGGAGGCGGCCAAGGTAAGGCGGCGTTTTCGA TCAAAACAATGCCAACAGCACGGCAGGAGGGTTCACTTGAGACACACGAC TCACTGGGTCATAGGTTTTGTCACGGAGCATGAGCATGTCGCTCGGCGGG TGTGCTATTGTACCCGGTGGCGTTTCGGGGATAACTCCGACCTTGGAAGA TTCTGACTTTGTTGTTCTGGTGAACTTCCGCTTCTGGCGTTCTGCCTGAA CCTTCGGTTTACCTGCGATCAATTGCAACCCATGATCTCTGCGTTGAAGA AGCGAGTTCTAAGATTGTCGATCGATGATGCCAAATGTGGAAACGCGCCT CCCAGGACCTGCTGGAGGCAAAGCCCGAGGCCGAGGGGCGGCTTCTGGCG TTGCTGGTCAACAAGCTTGGTGACCCCGACAGAAAAATCAGCTCCAAGGT ATGTAGGTCCCTGCTGCTACTGCTGGTGCTGCTGCTGGTGCTCCTGCGGC GGCGGCGGCGGCGGCGGCTGTTTTCCGCTGCTGTACTCGTTTTCGTTGGT GTGGTTGGCTGTTGTTCTCCTTGGTGCCATCGGTGTCTGTTGGTTGTTCT CGTTTGTGTTCGTCTTCCCAATACTGCAGTCGAGTGTGATCCACCATTTT CCCCTTTCCCCACCCCTCCCCCTCCAACACACCCAAGGTGATCCACCTCT TGCAAAGGTTGCTCATGAAGCACCCCGCGATGAAGGGTGTGGTGGTGAGG GAGGTGCAGCAGTACCTACACAGGCCTGGCCTCCAGCCCAAGGCCGTCTA CGCTGGCATCATCTTCCTCAATCAGGTGAGGATC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8811:699..4732-

>mRNA_H-canaliculatus_M_contigs8811.1.2 ID=mRNA_H-canaliculatus_M_contigs8811.1.2|Name=mRNA_H-canaliculatus_M_contigs8811.1.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=858bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8811:699..4732- (Hapterophycus canaliculatus Oshoro7m male)
GGAGCATCTGCTACCCTCCCCCCCGCGGTGACCGCACAAGCACGGGCCGC
GGGCAAAGCTCTGCTCGAGGCCGAGGTAGCCGCGTGGGCGGCGCAGAGGG
CAAGGCACGCCAGCGGGGACGACAAGTGGGTCGAGCAGGTCCTGCGAGGC
GGGACGCTGTCGGACAAGGTGGCGGCGCTGACGCTGCAGGTGCAGGAGAG
CCCGGTGCACCGTCTTTCCGTATTGGACGGCCTGCTGGACCTCGGCCTCA
AGAAAGAGAGGCGCACGGCCCAGATGGCCCTGGAGGCGCTCAAGGATCTG
TTCATCACCAACCTTCTTCCGGATGCAAGGAGGCTTGTGGCCTTCGAAGC
GCGGCCCTTGATGCAGGCTCTCGCCGCGGTGGAAGGGGGCGGGGTGGGGG
GCCAGGGCGGGGGCACCGGCGGAGGAAAGGGCAGCAGTTCGGGGGCGGGG
GGACAGGGAGTTAGCAGCCCCGGTGGTAAGGCGGCTGGAAAGGCGCTGCT
GATGTGGTACTTCGAGGACCAGATCCTGACCAGATTCTACCGCATGGTCG
GAGCGATCGAGGCCGGGTCAAGGGACACCGTGGAGAACTTCAAGAGGTTC
AGCCTGGAGGCGGCCAAGGACCTGCTGGAGGCAAAGCCCGAGGCCGAGGG
GCGGCTTCTGGCGTTGCTGGTCAACAAGCTTGGTGACCCCGACAGAAAAA
TCAGCTCCAAGGTGATCCACCTCTTGCAAAGGTTGCTCATGAAGCACCCC
GCGATGAAGGGTGTGGTGGTGAGGGAGGTGCAGCAGTACCTACACAGGCC
TGGCCTCCAGCCCAAGGCCGTCTACGCTGGCATCATCTTCCTCAATCAGG
TGAGGATC
back to top