mRNA_H-canaliculatus_M_contigs8804.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8804.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8804.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs8804.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH7_ECTSI)

HSP 1 Score: 281 bits (720), Expect = 1.450e-89
Identity = 207/332 (62.35%), Postives = 227/332 (68.37%), Query Frame = 1 
Query:    4 AYEDVQATARAMRASLKDRRSEVLDLKTNLQRVRASNERRREKLSERWKARVMAAMNEKKEAAERQRNFARQLTADVETLEEKLDGLERQASIPRQA-DRNCALAGAECARELKKAREAWIGAEKGRLQRLSEKRAGAIKQAAIRALEPQLSELVKANRAEARTRTDELEEVLLGLQASLERESADNVQTEAREYQTSLEGEVEEERRQAEHQLRLFARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAAADREAIALADHARELREAEEAHRNEEEDTRRRLAGETDRWQKQANSSARKEAEERQEVEKREAREKV 996
            A+EDVQATARAM+  LK+RRSEVLDLKTNLQRVRASNERRR K+SERW AR+                FARQL  DV+ LEEKL GLERQ    R+  DR+C +A AE ARELKKAREAW+ AEKGRLQRLSEK+AGAIKQAA+RALEPQL+ELVKANRAEAR R DEL EVLLGLQASLERES++ VQ EAR+YQ SLEGEVEEERRQAEHQ+RL  R                            XXXXXXXXXXXXXX                        AHR EE + RRRLA ET RWQKQ  +SARK AEE  E+ KREAREKV
Sbjct:    3 AFEDVQATARAMKVDLKERRSEVLDLKTNLQRVRASNERRRAKVSERWAARMAXXXXXXXXXXXXXXXFARQLKGDVDALEEKLGGLERQVGRFREGRDRDCVVARAESARELKKAREAWMAAEKGRLQRLSEKKAGAIKQAAVRALEPQLTELVKANRAEARARADELGEVLLGLQASLERESSEKVQMEARDYQLSLEGEVEEERRQAEHQVRLLGRSNEADIQEFREATRRDLEGERVRFEAGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHRQEEAEARRRLAEETGRWQKQVQASARKGAEEHDEIAKREAREKV 334
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BLAST of mRNA_H-canaliculatus_M_contigs8804.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9S5_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.670e-19
Identity = 59/92 (64.13%), Postives = 66/92 (71.74%), Query Frame = 1 
Query:    4 AYEDVQATARAMRASLKDRRSEVLDLKTNLQRVRASNERRREKLSERWKARVMAAMNEKKEAAERQRNFARQLTADVETLEEKLDGLERQAS 279
            A+EDVQATARAM+ +LK+RRSEVLDLKTNLQRVRASNERRR K+SERW AR+ A                  L  DV+ LEEKL GLERQAS
Sbjct:  180 AFEDVQATARAMKVNLKERRSEVLDLKTNLQRVRASNERRRAKVSERWAARMAAXXXXXXXXXXXXXXXXXXLKGDVDALEEKLGGLERQAS 271
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8804.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.450e-8962.35protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.670e-1964.13protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8804contigH-canaliculatus_M_contigs8804:288..4284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Model size996
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_005100.1
Cds size996
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8804.1.1prot_H-canaliculatus_M_contigs8804.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8804 288..4284 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854174.2161686-CDS-H-canaliculatus_M_contigs8804:287..4371696854174.2161686-CDS-H-canaliculatus_M_contigs8804:287..437Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8804 288..437 -
1696854174.2272375-CDS-H-canaliculatus_M_contigs8804:896..10611696854174.2272375-CDS-H-canaliculatus_M_contigs8804:896..1061Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8804 897..1061 -
1696854174.237573-CDS-H-canaliculatus_M_contigs8804:1582..17021696854174.237573-CDS-H-canaliculatus_M_contigs8804:1582..1702Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8804 1583..1702 -
1696854174.2501097-CDS-H-canaliculatus_M_contigs8804:2361..25471696854174.2501097-CDS-H-canaliculatus_M_contigs8804:2361..2547Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8804 2362..2547 -
1696854174.261121-CDS-H-canaliculatus_M_contigs8804:3337..34191696854174.261121-CDS-H-canaliculatus_M_contigs8804:3337..3419Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8804 3338..3419 -
1696854174.278937-CDS-H-canaliculatus_M_contigs8804:3821..40451696854174.278937-CDS-H-canaliculatus_M_contigs8804:3821..4045Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8804 3822..4045 -
1696854174.294479-CDS-H-canaliculatus_M_contigs8804:4215..42841696854174.294479-CDS-H-canaliculatus_M_contigs8804:4215..4284Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8804 4216..4284 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8804.1.1

>prot_H-canaliculatus_M_contigs8804.1.1 ID=prot_H-canaliculatus_M_contigs8804.1.1|Name=mRNA_H-canaliculatus_M_contigs8804.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=332bp
QAYEDVQATARAMRASLKDRRSEVLDLKTNLQRVRASNERRREKLSERWK
ARVMAAMNEKKEAAERQRNFARQLTADVETLEEKLDGLERQASIPRQADR
NCALAGAECARELKKAREAWIGAEKGRLQRLSEKRAGAIKQAAIRALEPQ
LSELVKANRAEARTRTDELEEVLLGLQASLERESADNVQTEAREYQTSLE
GEVEEERRQAEHQLRLFARSNEADIQEFREATRRDLEGERVRFEAERKRS
REAAGKELEGARAAAADREAIALADHARELREAEEAHRNEEEDTRRRLAG
ETDRWQKQANSSARKEAEERQEVEKREAREKV
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mRNA from alignment at H-canaliculatus_M_contigs8804:288..4284-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8804.1.1 ID=mRNA_H-canaliculatus_M_contigs8804.1.1|Name=mRNA_H-canaliculatus_M_contigs8804.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3997bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8804:288..4284- (Hapterophycus canaliculatus Oshoro7m male)
CAAGCGTACGAAGACGTACAAGCTACCGCGCGGGCCATGAGAGCGAGCCT
CAAGGACCGAAGATCCGAGGTGTGTGGGCATGCAACACAGAGAACACACC
GCACAAAATATTGCAGGTGGACAGGTTGCTGGTGCTCCGTTAGGTCAACG
TTCGTACCAATCATTCGGCACTGCTGTGAATACCATAGGCATCTCTAAGA
ACCCGAACGACGATAGACCCAAATGATGCACACATACAGGTGCTTGACCT
CAAGACAAACCTCCAGCGAGTACGGGCCTCGAACGAGCGTCGGCGTGAGA
AGCTATCTGAACGTTGGAAAGCGAGAGTAATGGCAGCCATGAACGAGAAG
AAAGAGGCAGCGGAACGGCAGAGAAACTTTGCGCGCCAGCTGACCGCCGA
CGTGGAGACTCTAGAGGAGAAACTGGACGGTCTTGAGAGACAGGCAAGCA
TTCCACGGCAGGCGTGCAAGCAGTGCGCACGTTCGACATTTTGGTTTGGA
GAGAAGCTGGGTCCAAAGACGACCGGGACAAGCTATTCGCGAGCGTCGAT
GCGGCTTCGCTGTTTAATCCCCACGAGGTCGCTTTGCTCATCCTAAGCGT
TGCTGCTGCGATAAGAAGTTTCAGGAATAATTTTCAACGGCGTTCCTGCA
AGCGATGCCCCAAATGGTGAATGCATGAACAATACCCTTGACCCCGACCT
CCTCTTGCGACTGGTGTAGTCAACCAAGGACAGCTGAATGAACGAGCAAA
CCACATCTACATGTCCACCACATAAAATCACATCGTCAATCAACTCGTAC
CAATCACCAACGAAATCGGCCGATCGTGCGGCCAATCAGCAGATAGGCCG
CTCTCACGAAAACAGAGATCGGAACTGCGCCCTTGCCGGAGCAGAGTGCG
CGCGGGAGCTCAAGAAAGCGCGAGAAGCATGGATAGGTGCAGAGAAGGTA
CGAATAGAGCAAAGCAACGGGGTGGAAAGGCGCGGGGACGGGTGGATCGA
TTTTTGTCGTGCACGTCGTCATGAGGGTCGGGATCCTTTGTTCCAACTTG
CAGTCTTTTATCTTCGTGTTCAAAGCCTTCATGCCTCGTCTCGGTTCCTA
CCAAGCCGCCGCGGAACACGTTTTGTACTCACGCACTCGCTGAGTTGCCC
ATAAAGAAAGGCAGGCCGACAGGCAGGCATTGAACAGAGCGCCAACTACA
TCAGCCAATGTTGGTCATTGAAAGGGAGATGCACGCAGGGTACGCTGCTT
CCTGCAGAAAACCAGAGGCGATCCCCGTGGGTTCCGCCCTGAAGTCGATC
GTTGCGCTAGCCTTGGAGGAGAGCTACGAGCGATAACGCTGAAAGTTGTC
GTAGCTTTGCTGTATGGCTTCGTACTCCCGTCCTCCCTCTGCCTTTGGAG
GGCCGTAGATTCCAAAACTTTATTATTTTTGTTTCGTTCCCGACACGCTG
AAGTCAGATCTATCTTCTTCGCTCAGCCAACAAGCATATTCCGTGCTGAA
TAGATAATGAGGGAGAGCACAGGTATAATACACACTCATGCATTTAGGTA
CCCCTGTTAACCGATCTTCTACTTTTCTCGTACCGGAGGCAAGACATAGA
CCAGACTGACACTCAAAACCTTCCAGGTCCTTCAGAAGCAAAAGTCATCA
TCATCATCATCAGAAACAACAAGAGCAACAACAACGACAACAAAAATAAC
AACACCAATACTTGTACCACTACGACAAAAAATACAGGGGCGGCTCCAGC
GCTTGTCAGAGAAGAGGGCTGGAGCCATCAAGCAGGCGGCGATCCGCGCC
CTGGAGCCGCAGCTGTCGGAGCTGGTCAAGGCCAACCGGGCGGAGGCAAG
GACGCGCACGGACGAGCTGGAAGAAGTGCTGCTTGGCTTGCAGGCGTCTC
TGGAGCGTGAAAGCGCCGACAACGTCAGTGGAAAGGGTTGGTGTCGCCTG
CTTGCTTGCTTGCGTGTCCCTTGAATTGTTTGCTTCAAGGGCTGCTTCTC
TCCTCCGCCCCTCGGCCCTCTTGCTCGTGTAGCAGCGCCGATAAGGACTT
CACCTGAAGGGATTCGGTTCATGCCAATAGCCGGAGGTTTGTGCCGTATG
GACTGCGTGTGTCTTTCAGGCAACTCATTTGGACGACGCCACGAAAGCTG
CAGCCGTCAAGACGAGCAGCAGCAATGGAAACACCATCACCACCAGCCCC
ACTCCCGCCACTCTTCCTGTCCTTGGCACATAGTTGCATGGATAAAAAGG
GCAGTTGTCCCTCCCTCCCACCACTGAGGTTTTGTTATTGCACTCTTCGC
TTTTCCCGTTCATATAATTGCCGTGGTCTTCGTCCGAACCCTTATTGGCA
CATTGTTTTCTTTCCAGCGTCTGTCTCATCGTTGCCCAACATCTGTGCCT
GTGTCAGTTTCGGCGGGTTGACGGGGTGATTTTTGACGAGATGATTTCAC
TTGCGTATGTTTTCTGCACCGCTTCATTCACGATGTTTTTAAAGAAGTTT
TCTTCTTGCGCGGTTATATTCCATTGTCCGGGGTAATTGGGGCGCCGGCA
CCGGTGGCGGCAACCCAACCGGCGGTTGGCAGGTTCAGACGGAAGCTCGA
GAGTACCAGACGTCGCTGGAGGGCGAAGTCGAGGAAGAGCGGCGGCAGGC
AGAACACCAGCTGAGGCTTTTCGCCAGGAGCAACGAGGCAGACATCCAAG
AGGTGAAATACTCAGGATTCGTGACAAAAACAAAGGGTTTTGAGGCGATG
ATGCTCTCGTGGTGAATCGTGGACACCAAGATGCCTGCGTGGCTTTTTAG
AAGAAAAACGTCACAAAGTTTAAGGAATACCTACCGAGCTACGTCTCAGC
AGGCGTCTCAGGAGGCCTCTGTAGAATTTCAAGCAGTGAGGGGCTCAAGT
GCGTTGGATGGCATAAAAAAATCAACAGACGTTTTCGCCGGCTGCTGCTG
TGATCTGTAGAACATGTCCTGCGGTCTCACTTTCGACTTGCAGTGTCAAA
GCAGCAACAGCAACAAGAACGAGGTGAACGGCAACAACAACAACAGTAGC
AGAAACAAAAAGAGAAACAGTACGTAAACAAGCCGACTGCTCAACCCGCG
AAATACGAGCTGTAGTGGATCACAATATCCACCGGCTCAAGCTCTGTGTC
CTCCACACAACCAAAAACTTTCCAACAGTCAACCACCCAACCGTCCACCT
CCTCCAACGATGTTCCCACCAAGTTTCGGGAAGCTACTCGACGAGACCTC
GAGGGCGAGCGCGTTCGCTTCGAAGCCGAACGTAAGCGATCCAGGGAGGC
CGCCGGTAAAGAGCTGGAGGGGGCAAGGGCGGCGGCGGCAGACCGGGAGG
CTATCGCGCTGGCCGACCACGCCAGGGAACTCCGCGAGGTGGGTGTTAGT
CGTTGACAGAGGTGGTATTGCCGCTGGGGTCGGTCTGTCGGGGATGCCAG
GGTTTCATGTGTGGGAAATGCAACCATTCCTACTTTTGCGGGGGCTAGAA
GGGTGTGTAGAGTCGAGAGGCGCGGGGAATGCATCACTGATTTCTCATGT
TAGATCCCCGTGGGTGCTTACGGTCTATCTTGTTCGCCCCTCCCCCCATA
TCGCCCGTCACACAACGGACGCAGATGTTCGAGATTGGAAGACTTCGAAG
TGTCGCAGCCAAGAGTCAAGCCAAAGAAATCAAGGGACGAAGCGGGCACA
AGCTAGCGACCCGCCACCAAAGCCGCTGAGTTCCGCCTCAATTTTCACCG
CTCTGTTTTCGCTTGCCGGACCATATCACTTTCTTCCGCTCCACGCGTTC
CTCGTTTTTCGTATTTTCCTCCCTGTACTGCGCTGAATAATTCTCAGGCC
GAAGAAGCCCACCGGAACGAGGAAGAAGACACGCGGCGTAGGCTGGCTGG
CGAGACCGACAGGTGGCAGAAGCAAGCCAACTCGTCGGCACGGAAGGAGG
CGGAGGAGCGACAAGAGGTCGAGAAGCGGGAGGCGAGAGAGAAGGTT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8804:288..4284-

>mRNA_H-canaliculatus_M_contigs8804.1.1 ID=mRNA_H-canaliculatus_M_contigs8804.1.1|Name=mRNA_H-canaliculatus_M_contigs8804.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=996bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8804:288..4284- (Hapterophycus canaliculatus Oshoro7m male)
CAAGCGTACGAAGACGTACAAGCTACCGCGCGGGCCATGAGAGCGAGCCT
CAAGGACCGAAGATCCGAGGTGCTTGACCTCAAGACAAACCTCCAGCGAG
TACGGGCCTCGAACGAGCGTCGGCGTGAGAAGCTATCTGAACGTTGGAAA
GCGAGAGTAATGGCAGCCATGAACGAGAAGAAAGAGGCAGCGGAACGGCA
GAGAAACTTTGCGCGCCAGCTGACCGCCGACGTGGAGACTCTAGAGGAGA
AACTGGACGGTCTTGAGAGACAGGCAAGCATTCCACGGCAGGCAGATCGG
AACTGCGCCCTTGCCGGAGCAGAGTGCGCGCGGGAGCTCAAGAAAGCGCG
AGAAGCATGGATAGGTGCAGAGAAGGGGCGGCTCCAGCGCTTGTCAGAGA
AGAGGGCTGGAGCCATCAAGCAGGCGGCGATCCGCGCCCTGGAGCCGCAG
CTGTCGGAGCTGGTCAAGGCCAACCGGGCGGAGGCAAGGACGCGCACGGA
CGAGCTGGAAGAAGTGCTGCTTGGCTTGCAGGCGTCTCTGGAGCGTGAAA
GCGCCGACAACGTTCAGACGGAAGCTCGAGAGTACCAGACGTCGCTGGAG
GGCGAAGTCGAGGAAGAGCGGCGGCAGGCAGAACACCAGCTGAGGCTTTT
CGCCAGGAGCAACGAGGCAGACATCCAAGAGTTTCGGGAAGCTACTCGAC
GAGACCTCGAGGGCGAGCGCGTTCGCTTCGAAGCCGAACGTAAGCGATCC
AGGGAGGCCGCCGGTAAAGAGCTGGAGGGGGCAAGGGCGGCGGCGGCAGA
CCGGGAGGCTATCGCGCTGGCCGACCACGCCAGGGAACTCCGCGAGGCCG
AAGAAGCCCACCGGAACGAGGAAGAAGACACGCGGCGTAGGCTGGCTGGC
GAGACCGACAGGTGGCAGAAGCAAGCCAACTCGTCGGCACGGAAGGAGGC
GGAGGAGCGACAAGAGGTCGAGAAGCGGGAGGCGAGAGAGAAGGTT
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