mRNA_H-canaliculatus_M_contigs8803.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8803.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8803.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs8803.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG1_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 1.930e-35
Identity = 65/100 (65.00%), Postives = 78/100 (78.00%), Query Frame = 1 
Query:    1 AVKRVDEEMTGEGLLLTQVTSSDKKIIRRVFVNVPNGILTWEKDAIFGTKWERVKLPEARVMCTSSLVKIGVVGKKGFFTFEACDEGEASAVCDALVAHA 300
            AVKRVD ++T  GLLLTQV   ++K++RR+ +    G+L WE DA+FG KWE+VKLPEARVM T SLVKIGVVGK  FF+FEACD+ EA AVC  LVAHA
Sbjct:  159 AVKRVDGDLTDGGLLLTQVMRGNRKVVRRLELEKKKGVLKWEVDALFGMKWEKVKLPEARVMSTGSLVKIGVVGKSEFFSFEACDDLEAGAVCKTLVAHA 258
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BLAST of mRNA_H-canaliculatus_M_contigs8803.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KED6_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.130e-33
Identity = 62/100 (62.00%), Postives = 78/100 (78.00%), Query Frame = 1 
Query:    1 AVKRVDEEMTGEGLLLTQVTSSDKKIIRRVFVNVPNGILTWEKDAIFGTKWERVKLPEARVMCTSSLVKIGVVGKKGFFTFEACDEGEASAVCDALVAHA 300
            AVKRVD ++T  GLLLTQVT  +++++RR+ +    G+L WE DA+FG KWE+VKLPEARVM   +LVKIGVVGK  FF+F+ACD+ EA AVC ALVA A
Sbjct:  145 AVKRVDGDLTDGGLLLTQVTWGNREVVRRLELEEKKGVLKWEVDALFGMKWEKVKLPEARVMSDGNLVKIGVVGKSDFFSFKACDDVEAGAVCKALVARA 244
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8803.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.930e-3565.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.130e-3362.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8803contigH-canaliculatus_M_contigs8803:2947..4687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Model size300
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_009950.1
Cds size276
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854174.139839-UTR-H-canaliculatus_M_contigs8803:2946..29701696854174.139839-UTR-H-canaliculatus_M_contigs8803:2946..2970Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8803 2947..2970 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854174.15277-CDS-H-canaliculatus_M_contigs8803:2970..29901696854174.15277-CDS-H-canaliculatus_M_contigs8803:2970..2990Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8803 2971..2990 +
1696854174.1649895-CDS-H-canaliculatus_M_contigs8803:3842..39781696854174.1649895-CDS-H-canaliculatus_M_contigs8803:3842..3978Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8803 3843..3978 +
1696854174.1793005-CDS-H-canaliculatus_M_contigs8803:4567..46871696854174.1793005-CDS-H-canaliculatus_M_contigs8803:4567..4687Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8803 4568..4687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8803.1.1prot_H-canaliculatus_M_contigs8803.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8803 2971..4687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8803.1.1

>prot_H-canaliculatus_M_contigs8803.1.1 ID=prot_H-canaliculatus_M_contigs8803.1.1|Name=mRNA_H-canaliculatus_M_contigs8803.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=92bp
MTGEGLLLTQVTSSDKKIIRRVFVNVPNGILTWEKDAIFGTKWERVKLPE
ARVMCTSSLVKIGVVGKKGFFTFEACDEGEASAVCDALVAHA
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mRNA from alignment at H-canaliculatus_M_contigs8803:2947..4687+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8803.1.1 ID=mRNA_H-canaliculatus_M_contigs8803.1.1|Name=mRNA_H-canaliculatus_M_contigs8803.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1741bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8803:2947..4687+ (Hapterophycus canaliculatus Oshoro7m male)
GCCGTGAAGCGTGTGGATGAGGAGATGACGGGTGAAGGCCTCCTGTGAGT
GCGGGCTGCTGTTTTAGCATTACGTTTTATTACCACAAGAGTCGACAGCA
TAGGAGGACCACCGTTCGAGACACGGCTCGGTGGATTGTTTCTCGCGTCA
TCGGGCGCATTTAATTTCCTGTCCGGAAGAAAGGAAAAAGGGATTTTTTT
CGTTCTTCATATTCGTTGCGGTGCACTTAGTGTCGTGCGCGAGAGACGGG
CGGGCAAGGATCCACTCTCCGCGCTCGGCTTCGAAGAGCGGTAGGTAGCC
GTTCCCATATTTTCGACCCTTGAGCGTTGGGATGTTCTCGGTCTTGTCTT
GTTGGATCCGATGTGATTGAAAGCATCTTGCTTTCCTCGCCTGATGAGGG
GGGGGCTTGAGGATGCACGGGCTAGTCCACATCCGCAGGAATGCATCTGC
CGCAGAATTGGTAGCACCAAGAGGTGTGCGTAGCGCGACCATTTGACCCG
AGTCGTACAACCTAGTTCATGACGGACCCAGGGTACAACGTGCGAAGTCA
ATCCTTTCATCCTTCCGCCTTGTGCGGATTGTCCGCCGCTATTGTGCGAC
TCCGATCATCGTATCGCTGGCCGTATGCTAACCCACGCCTCCCAAGCCCG
AAATCAAAAGGAATCCGTCTGCGACAGCTTTAGATACGTCTTCGTGTCCG
CTAACCCAGTCACTCAAAGAGTAGATTTGATTGGCCCGTCTCTCAATCCA
GGATTTGCCCAGATAGTTGTTCGGGGGGGAGAGTTCGGAGGGGTTGAGCG
GTTGATTTTCGGACGGAGGAGAGTGACGACCAAGTTCATCCCCGGTGGCT
GGGTGGCCGTCGTGCGGCTAAAGCTGCTCTTCGTGCCAACGAACAGTCTT
ACCCAGGTGACGAGCTCAGACAAGAAGATTATCCGGAGGGTGTTCGTGAA
CGTCCCTAACGGGATCCTGACGTGGGAGAAGGATGCCATCTTCGGTACGA
AATGGGAAAGGGTCAAGCTCCCCGAAGCGAGGGTGAGAGGAAAAAAAATG
GAAAAATAGCGTCGGGCGTGGTGGCTGTCATTTTCTTGGCAACGGCCGTG
TTCTGGAGTTGCTTGCCGGAACTTGACATGGAGAAAAAGAGCGTTCTTCG
TGTGTTCAACGGTGACATTTTCCTTGACAACTATGTCCCGACGTTGCGCG
CAGTAGGTAGAGAAGGAGGACATATTCCCGCCGCAAACACCGTCCAGTCC
ACCAGAACCCCCGAGCGCGGAGCGTAGGCACGACGCAACATCTTAGGGCG
CACGCCCTTTTCTTGTAACCTTCCTTTTCTCGCCGAGAGCCTCGCTTCTC
TTTGCCTCTCCGCGGCCTCCGTAAGCACCAAGGCCGTTCCTCGTGCTAGT
GCATTTGACGATTTGCGTTGCATGCTGCGAAACGTCGATCGATCGGTACG
CTACTCGCCGCGTGCCAACCACCAGCATGTCTTATTGATGGCGCATTTTT
TTATCCCAGCACTTCTCACAAACCCAACCAAAAGGACTCGAATAACACTC
CGTCTTCCCCCTGACGGCGTGTGTTCGCTGTCCCGTCCCCCCGACGTACA
CGTGAAACGACAAACGAGAAGGTGATGTGCACGAGCAGCCTGGTCAAGAT
CGGGGTCGTCGGCAAGAAGGGCTTCTTCACGTTCGAGGCGTGCGACGAGG
GCGAGGCTTCGGCCGTCTGCGACGCCCTTGTAGCTCACGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8803:2947..4687+

>mRNA_H-canaliculatus_M_contigs8803.1.1 ID=mRNA_H-canaliculatus_M_contigs8803.1.1|Name=mRNA_H-canaliculatus_M_contigs8803.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=276bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8803:2947..4687+ (Hapterophycus canaliculatus Oshoro7m male)
ATGACGGGTGAAGGCCTCCTTCTTACCCAGGTGACGAGCTCAGACAAGAA
GATTATCCGGAGGGTGTTCGTGAACGTCCCTAACGGGATCCTGACGTGGG
AGAAGGATGCCATCTTCGGTACGAAATGGGAAAGGGTCAAGCTCCCCGAA
GCGAGGGTGATGTGCACGAGCAGCCTGGTCAAGATCGGGGTCGTCGGCAA
GAAGGGCTTCTTCACGTTCGAGGCGTGCGACGAGGGCGAGGCTTCGGCCG
TCTGCGACGCCCTTGTAGCTCACGCC
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