mRNA_H-canaliculatus_M_contigs8802.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8802.2.1
Unique NamemRNA_H-canaliculatus_M_contigs8802.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs8802.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER6_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 3.640e-40
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:   43 MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGE 240
            MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGE
Sbjct:    1 MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGE 66
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BLAST of mRNA_H-canaliculatus_M_contigs8802.2.1 vs.
Match: Eukaryotic (translation initiation factor 6 n=2 Tax=PX clade TaxID=569578 RepID=A0A6H5KDJ3_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 3.100e-38
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 1 
Query:   43 MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGERR 246
            MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVG +R
Sbjct:    1 MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGNKR 68
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BLAST of mRNA_H-canaliculatus_M_contigs8802.2.1 vs.
Match: Translation (initiation factor 6 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RUG4_9ARCH)

HSP 1 Score: 121 bits (304), Expect = 1.620e-32
Identity = 60/68 (88.24%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:   43 MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGERR 246
            MA RAQFENSNEIGVFS LTNSYAL +IGGSENFYSVFE ELADHIPVVHTSIAGCRFVGRV VG +R
Sbjct:    1 MAIRAQFENSNEIGVFSNLTNSYALVAIGGSENFYSVFEQELADHIPVVHTSIAGCRFVGRVTVGNKR 68
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BLAST of mRNA_H-canaliculatus_M_contigs8802.2.1 vs.
Match: Eukaryotic (translation initiation factor 6 (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z5M3_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.270e-31
Identity = 56/67 (83.58%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:   43 MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGER 243
            MA R QFENSNEIGVFSKLTN+YAL  +GGSENFYSVFESELADHIPV+H SIAGCRFVGRV VG +
Sbjct:    1 MAIRCQFENSNEIGVFSKLTNAYALVCVGGSENFYSVFESELADHIPVIHCSIAGCRFVGRVSVGNK 67
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BLAST of mRNA_H-canaliculatus_M_contigs8802.2.1 vs.
Match: Eukaryotic (translation initiation factor 6 n=27 Tax=Oomycota TaxID=4762 RepID=H3G8Q6_PHYRM)

HSP 1 Score: 118 bits (295), Expect = 3.630e-31
Identity = 56/68 (82.35%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:   43 MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGERR 246
            MATR QFENSNEIGVFSKLTNSY L  +GGSENFYS FESELA+HIPVVH S+AGCRFVGRV VG +R
Sbjct:    1 MATRCQFENSNEIGVFSKLTNSYCLVCVGGSENFYSTFESELAEHIPVVHASVAGCRFVGRVAVGNKR 68
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BLAST of mRNA_H-canaliculatus_M_contigs8802.2.1 vs.
Match: Eukaryotic (translation initiation factor 6 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UBL7_9STRA)

HSP 1 Score: 119 bits (297), Expect = 8.570e-31
Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = 1 
Query:    1 LNQDTSALSTQSDAMATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGERR 246
            LN  T+ L     +MATR QFENSNEIGVFS+LTNSY L ++GGSENFYS+FE ELADHIPV+H S+AGCRF+GRV +G +R
Sbjct:   59 LNIKTAGLLFWGSSMATRLQFENSNEIGVFSRLTNSYCLTALGGSENFYSIFEQELADHIPVIHASVAGCRFIGRVTIGNKR 140
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BLAST of mRNA_H-canaliculatus_M_contigs8802.2.1 vs.
Match: Eukaryotic (translation initiation factor 6 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8K6_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.020e-30
Identity = 53/68 (77.94%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:   43 MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGERR 246
            MATR QFENSNEIGVFS+LTNSY L ++GGSENFYS+FE ELADHIPV+H S+AGCRFVGRV +G +R
Sbjct:    1 MATRLQFENSNEIGVFSRLTNSYCLTALGGSENFYSIFEQELADHIPVIHASVAGCRFVGRVTIGNKR 68
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BLAST of mRNA_H-canaliculatus_M_contigs8802.2.1 vs.
Match: Hypothetical (protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NKR6_GUITH)

HSP 1 Score: 111 bits (278), Expect = 3.380e-30
Identity = 49/66 (74.24%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:   49 TRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGERR 246
            TR QFEN+NE+GVF++LTNSY L  IGGSENFYSVFESELADH+PV+H SIAGCR +GR+CVG  +
Sbjct:    1 TRVQFENNNEVGVFARLTNSYCLVGIGGSENFYSVFESELADHVPVIHASIAGCRIIGRLCVGNSK 66
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BLAST of mRNA_H-canaliculatus_M_contigs8802.2.1 vs.
Match: Eukaryotic (translation initiation factor 6 n=2 Tax=Cryptophyceae TaxID=3027 RepID=L1K0B2_GUITC)

HSP 1 Score: 115 bits (287), Expect = 5.870e-30
Identity = 51/68 (75.00%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:   43 MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGERR 246
            MATR QFEN+NE+GVF++LTNSY L  IGGSENFYSVFESELADH+PV+H SIAGCR +GR+CVG  +
Sbjct:    1 MATRVQFENNNEVGVFARLTNSYCLVGIGGSENFYSVFESELADHVPVIHASIAGCRIIGRLCVGNSK 68
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BLAST of mRNA_H-canaliculatus_M_contigs8802.2.1 vs.
Match: Eukaryotic (translation initiation factor 6 n=8 Tax=Peronosporaceae TaxID=4777 RepID=A0A3R7K398_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.240e-29
Identity = 57/68 (83.82%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:   43 MATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYSVFESELADHIPVVHTSIAGCRFVGRVCVGERR 246
            MATR QFENSNEIGVFSKLTNSY L  +GGSENFYS FESELADH+PVVH SIAGCRFVGRV VG +R
Sbjct: 1164 MATRCQFENSNEIGVFSKLTNSYCLVCVGGSENFYSTFESELADHVPVVHASIAGCRFVGRVAVGNKR 1231
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8802.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized3.640e-40100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Eukaryotic3.100e-3897.06translation initiation factor 6 n=2 Tax=PX clade T... [more]
Translation1.620e-3288.24initiation factor 6 n=1 Tax=archaeon TaxID=1906665... [more]
Eukaryotic1.270e-3183.58translation initiation factor 6 (Fragment) n=1 Tax... [more]
Eukaryotic3.630e-3182.35translation initiation factor 6 n=27 Tax=Oomycota ... [more]
Eukaryotic8.570e-3168.29translation initiation factor 6 n=1 Tax=Nannochlor... [more]
Eukaryotic1.020e-3077.94translation initiation factor 6 n=1 Tax=Nannochlor... [more]
Hypothetical3.380e-3074.24protein n=1 Tax=Guillardia theta TaxID=55529 RepID... [more]
Eukaryotic5.870e-3075.00translation initiation factor 6 n=2 Tax=Cryptophyc... [more]
Eukaryotic1.240e-2983.82translation initiation factor 6 n=8 Tax=Peronospor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8802contigH-canaliculatus_M_contigs8802:4641..4886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LER6
Preferred nameEIF6
PFAMseIF-6
Model size246
Max annot lvl2759|Eukaryota
KEGG koko:K03264,ko:K03440
KEGG TC1.A.6.1.4,1.A.6.2,1.A.6.4,1.A.6.5
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000054,GO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0001101,GO:0002682,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005638,GO:0005652,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005856,GO:0005882,GO:0006109,GO:0006110,GO:0006139,GO:0006140,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007275,GO:0008104,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009737,GO:0009790,GO:0009791,GO:0009793,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010033,GO:0010154,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010565,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016072,GO:0016441,GO:0016458,GO:0017148,GO:0019216,GO:0019217,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030684,GO:0030687,GO:0030808,GO:0030811,GO:0031047,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031503,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032868,GO:0032870,GO:0032991,GO:0033036,GO:0033750,GO:0033993,GO:0034248,GO:0034249,GO:0034250,GO:0034399,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0035194,GO:0035195,GO:0035278,GO:0040029,GO:0040033,GO:0042221,GO:0042254,GO:0042255,GO:0042256,GO:0042273,GO:0042304,GO:0042325,GO:0042886,GO:0043021,GO:0043022,GO:0043023,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043467,GO:0043470,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045111,GO:0045184,GO:0045595,GO:0045637,GO:0045652,GO:0045727,GO:0045974,GO:0046483,GO:0046890,GO:0046907,GO:0048316,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051193,GO:0051196,GO:0051234,GO:0051236,GO:0051239,GO:0051246,GO:0051247,GO:0051248,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051716,GO:0060255,GO:0061458,GO:0062012,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070887,GO:0070925,GO:0071166,GO:0071215,GO:0071229,GO:0071310,GO:0071396,GO:0071426,GO:0071428,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097305,GO:0097306,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:1900371,GO:1900542,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:1901701,GO:1902626,GO:1903578,GO:1903706,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2000377,GO:2001169
Exons1
Evalue5.97e-41
EggNOG OGsCOG1976@1|root,KOG3185@2759|Eukaryota
Ec32 ortholog descriptionTranslation initiation factor IF6
Ec32 orthologEc-26_000870.1
Descriptionmature ribosome assembly
Cds size246
COG categoryJ
BRITEko00000,ko00001,ko03009,ko03012,ko04040
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854174.104346-CDS-H-canaliculatus_M_contigs8802:4640..48861696854174.104346-CDS-H-canaliculatus_M_contigs8802:4640..4886Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8802 4641..4886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8802.2.1prot_H-canaliculatus_M_contigs8802.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8802 4641..4886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8802.2.1

>prot_H-canaliculatus_M_contigs8802.2.1 ID=prot_H-canaliculatus_M_contigs8802.2.1|Name=mRNA_H-canaliculatus_M_contigs8802.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=82bp
LNQDTSALSTQSDAMATRAQFENSNEIGVFSKLTNSYALCSIGGSENFYS
VFESELADHIPVVHTSIAGCRFVGRVCVGERR
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mRNA from alignment at H-canaliculatus_M_contigs8802:4641..4886+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8802.2.1 ID=mRNA_H-canaliculatus_M_contigs8802.2.1|Name=mRNA_H-canaliculatus_M_contigs8802.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=246bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8802:4641..4886+ (Hapterophycus canaliculatus Oshoro7m male)
CTCAACCAGGATACCAGCGCACTCTCGACCCAATCGGACGCCATGGCGAC
CCGCGCCCAGTTCGAGAACTCCAACGAGATCGGCGTGTTCTCCAAGCTCA
CCAACAGCTACGCTCTCTGCTCTATCGGAGGCAGCGAAAACTTCTACAGC
GTCTTCGAATCTGAACTCGCCGACCACATTCCAGTCGTTCACACCAGCAT
TGCGGGGTGCCGATTTGTGGGGCGGGTGTGCGTAGGTGAGAGACGG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8802:4641..4886+

>mRNA_H-canaliculatus_M_contigs8802.2.1 ID=mRNA_H-canaliculatus_M_contigs8802.2.1|Name=mRNA_H-canaliculatus_M_contigs8802.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=246bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8802:4641..4886+ (Hapterophycus canaliculatus Oshoro7m male)
CTCAACCAGGATACCAGCGCACTCTCGACCCAATCGGACGCCATGGCGAC
CCGCGCCCAGTTCGAGAACTCCAACGAGATCGGCGTGTTCTCCAAGCTCA
CCAACAGCTACGCTCTCTGCTCTATCGGAGGCAGCGAAAACTTCTACAGC
GTCTTCGAATCTGAACTCGCCGACCACATTCCAGTCGTTCACACCAGCAT
TGCGGGGTGCCGATTTGTGGGGCGGGTGTGCGTAGGTGAGAGACGG
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