mRNA_H-canaliculatus_M_contigs879.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs879.1.1
Unique NamemRNA_H-canaliculatus_M_contigs879.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs879.1.1 vs.
Match: Dolichyl-P-Man:Man(5)GlcNAc(2)-PP-dolichyl (mannosyltransferase, family GT58 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLD1_ECTSI)

HSP 1 Score: 356 bits (914), Expect = 1.070e-119
Identity = 181/237 (76.37%), Postives = 199/237 (83.97%), Query Frame = 1
Query:    1 RWRLGCVSYSLAVGVKMNILLFAPGLLLLLLQAKGIAGTALCLSICATVQLLLGAPFLLQHPVAYISRSFELGRVFKFEWTVNFKFLSEDAFVSPVLSIALLVLTVTTLSLFAFKWVGSAQAVESFADS---ANAGRGSRASNDANFHLHPEYVVKTLFVSNIIGIVFCRSLHYQFYSWYYHTLPFLLWQTNFSVAVRLAVLCGVEFGFNVFPASPLSSAVLQVCHILLLAGVWTAP 702
            RWRLGCVSYSLAVGVKMNILLFAPGLLLLL+QA G+ G A+CLSICA VQLLLGAPFLL HPVAY+SRSFELGRVFKFEWTVNFKFL+E+AFVSP LSIALL LT+  L+LFA KW+ SA+ VE+F+ S   A  G G       N  LHPEYVVKTLFVSN IGIVFCRSLHYQFYSWYYHTLPFLLWQT   VA+RL VLCGVE GFNVFPA+ LSS VLQVCH+ +LAG+W +P
Sbjct:  180 RWRLGCVSYSLAVGVKMNILLFAPGLLLLLVQANGVGGAAVCLSICAGVQLLLGAPFLLHHPVAYLSRSFELGRVFKFEWTVNFKFLTEEAFVSPGLSIALLALTLAVLALFASKWLRSAREVETFSASDLRAGEGAGGATGGAVNARLHPEYVVKTLFVSNFIGIVFCRSLHYQFYSWYYHTLPFLLWQTGLPVALRLVVLCGVEVGFNVFPATALSSGVLQVCHVAILAGLWVSP 416          
BLAST of mRNA_H-canaliculatus_M_contigs879.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUF9_HETAK)

HSP 1 Score: 255 bits (651), Expect = 1.470e-81
Identity = 131/234 (55.98%), Postives = 163/234 (69.66%), Query Frame = 1
Query:    1 RWRLGCVSYSLAVGVKMNILLFAPGLLLLLLQAKGIAGTALCLSICATVQLLLGAPFLLQHPVAYISRSFELGRVFKFEWTVNFKFLSEDAFVSPVLSIALLVLTVTTLSLFAFKWVGSAQAVESFADSANAGRGSRASNDANFHLHPEYVVKTLFVSNIIGIVFCRSLHYQFYSWYYHTLPFLLWQTNFSVAVRLAVLCGVEFGFNVFPASPLSSAVLQVCHILLLAGVWTAP 702
            +WR G V +SLAV VKMNILLFAPGLLLL LQ++G+ GT +CLSICA +Q+LLG PFLL +PVAY+ RSFELGRVF ++WTVNFKFL+E+ FVS  LS+ LL+L V  ++ FA KW+ S ++                  D    L P Y   TLF SN IGIVF R+LHYQFY WY+HTLP L W     + ++LA +  VE+ FNVFPA+P SS VLQ+ H+LLL  +WTAP
Sbjct:   76 KWRFGSVFFSLAVSVKMNILLFAPGLLLLFLQSQGVLGTIICLSICAGIQVLLGLPFLLTYPVAYLHRSFELGRVFMYKWTVNFKFLNEETFVSKSLSVYLLLLMVMAIASFAKKWLSSVKSNSIVFQK----------KDGPSKLDPYYTTLTLFTSNFIGIVFARTLHYQFYCWYFHTLPLLAWHGRLPLVLKLAAVASVEWAFNVFPATPASSLVLQLSHVLLLGALWTAP 299          
BLAST of mRNA_H-canaliculatus_M_contigs879.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YB06_9STRA)

HSP 1 Score: 237 bits (604), Expect = 1.680e-72
Identity = 129/234 (55.13%), Postives = 162/234 (69.23%), Query Frame = 1
Query:    1 RWRLGCVSYSLAVGVKMNILLFAPGLLLLLLQAKGIAGTAL-CLSICATVQLLLGAPFLLQHPVAYISRSFELGRVFKFEWTVNFKFLSEDAFVSPVLSIALLVLTVTTLSLFAFKWVGSAQAVESFADSANAGRGSRASNDANFHLHPEYVVKTLFVSNIIGIVFCRSLHYQFYSWYYHTLPFLLWQTNFSVAVRLAVLCGVEFGFN-VFPASPLSSAVLQVCHILLLAGVWT 696
            RWRLGCV YSLAVGVKMN+LLFAPGLLLLLLQA G A  A+ C+SICA VQL++G PFL  +PV YI+ +F LGRVF ++WTVN KFLSED FVS  LS+ALL + V  L+ FA KW+  +          +    S     A   L P+YVV T+ VSN IGIVF RSLHYQFY+WY+H +PFL  +  FS+  ++A+   +E+ F  VFPA+  SS +LQ  HI+LL+ V+T
Sbjct:  214 RWRLGCVMYSLAVGVKMNVLLFAPGLLLLLLQAYGSAAGAVGCISICALVQLVIGLPFLRTYPVQYIAGAFNLGRVFMYKWTVNLKFLSEDVFVSKPLSVALLAMHVIALAFFARKWLAGSGGPAICIKYDDRSFSSNLFGRAKSALSPDYVVTTMLVSNFIGIVFARSLHYQFYAWYFHAIPFLCQRAKFSLPAQVAIFLSMEYAFGYVFPATAASSLLLQGAHIVLLSAVYT 447          
BLAST of mRNA_H-canaliculatus_M_contigs879.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FU24_9STRA)

HSP 1 Score: 233 bits (594), Expect = 2.050e-70
Identity = 129/254 (50.79%), Postives = 169/254 (66.54%), Query Frame = 1
Query:    1 RWRLGCVSYSLAVGVKMNILLFAPGLLLLLLQA-KGIAGTALCLSICATVQLLLGAPFLLQHPVAYISRSFELGRVFKFEWTVNFKFLSEDAFVSPVLSIALLVLTVTTLSLFAFKWVGSAQAVESFADSANAGRGSRASNDANFHLHPEYVVKTLFVSNIIGIVFCRSLHYQFYSWYYHTLPFLLWQTNFS-------------------VAVRLAVLCGVEFGFNVFPASPLSSAVLQVCHILLLAGVWTAP 702
            RW  GC++YSL VGVKMN+LL APGLLLLLLQ  +GIAGT  CL+ CA VQL++GAPFLLQ+P  Y+SR+F+  RVF F+WTVN+KFL ED FVSP LS++LL+L ++TL LFA KW+ + +     A +       R  ++  F   P Y+  TLFVSN IGIVF R+LHYQFY WY+H+LP +L+  + S                   VA R+ +   VE  FN+FPA+P SSA+LQV H+ +L  ++ AP
Sbjct:  251 RWHTGCIAYSLGVGVKMNVLLSAPGLLLLLLQGQRGIAGTISCLATCAAVQLIIGAPFLLQNPTEYLSRAFQFSRVFLFKWTVNWKFLPEDMFVSPALSVSLLLLHLSTLILFASKWISATRLQTKNASALFV----RVKDNRPFS--PSYIAYTLFVSNFIGIVFARTLHYQFYVWYFHSLPLMLYIASSSSLSQKSGTNDGLILASVADVACRMTLTVVVEVAFNIFPATPSSSAMLQVAHLCILLILYQAP 498          
BLAST of mRNA_H-canaliculatus_M_contigs879.1.1 vs.
Match: Hypothetical (protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S5Q9_9STRA)

HSP 1 Score: 231 bits (590), Expect = 2.940e-70
Identity = 126/235 (53.62%), Postives = 164/235 (69.79%), Query Frame = 1
Query:    1 RWRLGCVSYSLAVGVKMNILLFAPGLLLLLLQAK-GIAGTALCLSICATVQLLLGAPFLLQHPVAYISRSFELGRVFKFEWTVNFKFLSEDAFVSPVLSIALLVLTVTTLSLFAFKWVGSAQ-AVESFADSANAGRGSRASNDANFHLHPEYVVKTLFVSNIIGIVFCRSLHYQFYSWYYHTLPFLLWQTNFSVAVRLAVLCGVEFGFNVFPASPLSSAVLQVCHILLLAGVWTA 699
            +WR+GC+ YSL V +KMN+LLFAPGLLLLLLQ+   +  T +CL ICA VQL+LGAPFLL  PV+Y+ ++FEL RVF +EWTVN+KFL ED FVS  LSI LL+  +  L LFA KW+ SA+    S+    N    +   N     L PEY+++T+F+SN IGIVF R+LHYQFYSWY++++PF+L  T      +L V+  +EF FN FPA   SSAVLQ+ H+ LL+GV  A
Sbjct:  236 KWRIGCLFYSLGVSIKMNVLLFAPGLLLLLLQSSDNLVETIICLGICAVVQLILGAPFLLTFPVSYLRKAFELDRVFFYEWTVNWKFLPEDIFVSKPLSIGLLLCHIGFLVLFAIKWLRSAKDQTGSYLFLCNNPTNTSTRNKNQ--LTPEYIIQTMFLSNFIGIVFARTLHYQFYSWYFYSVPFMLMFTLMKRHTKLMVVIMIEFAFNTFPAMAKSSAVLQMAHVTLLSGVLLA 468          
BLAST of mRNA_H-canaliculatus_M_contigs879.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FUB1_9STRA)

HSP 1 Score: 216 bits (549), Expect = 1.550e-66
Identity = 124/252 (49.21%), Postives = 163/252 (64.68%), Query Frame = 1
Query:    7 RLGCVSYSLAVGVKMNILLFAPGLLLLLLQA-KGIAGTALCLSICATVQLLLGAPFLLQHPVAYISRSFELGRVFKFEWTVNFKFLSEDAFVSPVLSIALLVLTVTTLSLFAFKWVGSAQAVESFADSANAGRGSRASNDANFHLHPEYVVKTLFVSNIIGIVFCRSLHYQFYSWYYHTLPFLLWQTNFS-------------------VAVRLAVLCGVEFGFNVFPASPLSSAVLQVCHILLLAGVWTAP 702
            R+G V      GVKMN+LL APGLLLLLLQ  +GIAGT  CL+ CA VQL++GAPFLLQ+P  Y+SR+F+  RVF F+WTVN+KFL ED FVSP LS++LL+L ++TL LFA KW+ + +     A +       R  ++  F   P Y+  TLFVSN IGIVF R+LHYQFY WY+H+LP +L+  + S                   VA R+ +   VE  FN+FPA+P SSA+LQV H+ +L  ++ AP
Sbjct:    8 RIGIVGLGGTRGVKMNVLLSAPGLLLLLLQGQRGIAGTISCLATCAAVQLIIGAPFLLQNPTEYLSRAFQFSRVFLFKWTVNWKFLPEDMFVSPALSVSLLLLHLSTLILFASKWISATRLQTKNASALFV----RVKDNRPFS--PSYIAYTLFVSNFIGIVFARTLHYQFYVWYFHSLPLMLYIASSSSLSQKSGTNDGLILASVADVACRMTLTVVVEVAFNIFPATPSSSAMLQVAHLCILLILYQAP 253          
BLAST of mRNA_H-canaliculatus_M_contigs879.1.1 vs.
Match: Dolichyl-P-Man:Man(5)GlcNAc(2)-PP-dolichyl (mannosyltransferase, family GT58 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZM4_9STRA)

HSP 1 Score: 222 bits (566), Expect = 1.670e-66
Identity = 129/282 (45.74%), Postives = 161/282 (57.09%), Query Frame = 1
Query:    1 RWRLGCVSYSLAVGVKMNILLFAPGLLLLLL------------------------------------------------QAKGIAGTALCLSICATVQLLLGAPFLLQHPVAYISRSFELGRVFKFEWTVNFKFLSEDAFVSPVLSIALLVLTVTTLSLFAFKWVGSAQAVESFADSANAGRGSRASNDANFHLHPEYVVKTLFVSNIIGIVFCRSLHYQFYSWYYHTLPFLLWQTNFSVAVRLAVLCGVEFGFNVFPASPLSSAVLQVCHILLLAGVWTAP 702
            RWR GC  Y+LAVGVKMN+LL APGLL                                                    +A  + GTALCLSICA VQ L+GAPFLL HPV+Y+ R+F+  RVF+  +TVN KFL+E AFVS  LS ALL   + TL+ FA KW  +A A      SA      RA       L P+YV++TL VSN IG+VF RS+HYQFY+WY+H+LP LLW T    A RL +L  +E  FNV+P++P SSA+LQ  H++LLA +W AP
Sbjct:  185 RWRGGCALYALAVGVKMNVLLAAPGLLXXXXXXXXXXXXXXXXXXXSGXDGIXXXXXXXXXXXXXXXXXXXXXXXXXSDRAAALRGTALCLSICAGVQALIGAPFLLTHPVSYVRRAFDFSRVFEHRYTVNLKFLNERAFVSRALSAALLAAMLCTLAAFAVKWTRAAAA------SARRCPKPRA-------LSPQYVLRTLLVSNFIGVVFARSMHYQFYAWYFHSLPLLLWTTQLPTAARLLLLAAIELAFNVYPSTPASSALLQAAHLVLLAALWAAP 453          
BLAST of mRNA_H-canaliculatus_M_contigs879.1.1 vs.
Match: EOG090X04XE (n=7 Tax=Daphnia TaxID=6668 RepID=E9FQN9_DAPPU)

HSP 1 Score: 216 bits (549), Expect = 1.060e-64
Identity = 115/231 (49.78%), Postives = 159/231 (68.83%), Query Frame = 1
Query:    4 WRLGCVSYSLAVGVKMNILLFAPGLLLLLLQAKGIAGTALCLSICATVQLLLGAPFLLQHPVAYISRSFELGRVFKFEWTVNFKFLSEDAFVSPVLSIALLVLTVTTLSLFAFKWVGSAQAVESFADSANAGRGSRASNDANFHLHPEYVVKTLFVSNIIGIVFCRSLHYQFYSWYYHTLPFLLWQTNFSVAVRLAVLCGVEFGFNVFPASPLSSAVLQVCHILLLAGVWT 696
            W LG   +SLAV +KMNILLFAP LLL  + ++G  GT   LSICA +QLLLGAPFLL +PVAY+  SF LGR+F FEWTVN++FLSE+ FV P   I+LL+L V  L++FA  W    + ++SFA     G G          +  + ++  LF +N+IG+ F RSLHYQFY WY+HTLP+LLW T +S+ +RL +L  +E  +N FP++ +SSA+L VCH+L++ G+++
Sbjct:  197 WTLGSTFFSLAVSIKMNILLFAPALLLAYIASQGFYGTIKQLSICAGIQLLLGAPFLLTNPVAYMVGSFNLGRIFLFEWTVNWRFLSEELFVHPGFHISLLLLHVGLLAIFAKPWF---RYMKSFAKLQPTGVG----------IVSQLLLLPLFTANLIGVAFSRSLHYQFYVWYFHTLPYLLWSTPYSIWLRLCILGLIEMSWNTFPSTNVSSAMLHVCHLLIIYGIFS 414          
BLAST of mRNA_H-canaliculatus_M_contigs879.1.1 vs.
Match: hypothetical (protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644F057)

HSP 1 Score: 215 bits (548), Expect = 1.700e-64
Identity = 110/235 (46.81%), Postives = 161/235 (68.51%), Query Frame = 1
Query:    1 RWRLGCVSYSLAVGVKMNILLFAPGLLLLLLQAKGIAGTALCLSICATVQLLLGAPFLLQHPVAYISRSFELGRVFKFEWTVNFKFLSEDAFVSPVLSIALLVLTVTTLSLFAFKWVGSAQAVESFADSANAGRGSRASNDANFHLHPEYVVKTLFVSNIIGIVFCRSLHYQFYSWYYHTLPFLLWQTNF-SVAVRLAVLCGVEFGFNVFPASPLSSAVLQVCHILLLAGVWTAP 702
            RW +GCV +SLAVG+KMN+LLFAP LLLLLLQ  G+A T   L+ICA VQ+LLG PFL+++PV Y++R+FE  R F ++WTVN++F+  D F+S   +IALL   +  LSLF +KW  +   +       N+ R S  S+    +L P+Y+V  +F +NI+G+ F RSLHYQFY WY+H+L FLLW      V +R+ +L  +E+ +NV+P++  SS +L +C++L++A +  AP
Sbjct:  186 RWSIGCVFFSLAVGIKMNLLLFAPALLLLLLQTYGVAKTVPRLAICAIVQVLLGVPFLMRNPVGYVARAFEFSRQFMYKWTVNWRFVPVDVFLSKPWAIALLACHLFVLSLFVWKWCRAQGGL------LNSIRLSSPSSQPKRYLSPDYIVTLMFTANIVGMTFSRSLHYQFYLWYFHSLAFLLWHCPMLPVPLRITILGAIEYCWNVYPSTDFSSILLFICNVLIVASIMLAP 414          
BLAST of mRNA_H-canaliculatus_M_contigs879.1.1 vs.
Match: dol-P-Man:Man(5)GlcNAc(2)-PP-Dol (alpha-1,3-mannosyltransferase-like n=2 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A5239F)

HSP 1 Score: 215 bits (548), Expect = 1.830e-64
Identity = 117/235 (49.79%), Postives = 161/235 (68.51%), Query Frame = 1
Query:    1 RWRLGCVSYSLAVGVKMNILLFAPGLLLLLLQAKGIAGTALCLSICATVQLLLGAPFLLQHPVAYISRSFELGRVFKFEWTVNFKFLSEDAFVSPVLSIALLVLTVTTLSLFA-FKWVGSAQAVESFADSANAG-RGSRASNDANFHLHPEYVVKTLFVSNIIGIVFCRSLHYQFYSWYYHTLPFLLWQTNFSVAVRLAVLCGVEFGFNVFPASPLSSAVLQVCHILLLAGVWTA 699
            RW LG + +S AV VKMN+LL+AP LLLL+L+A  I+   L L+  A VQ+LLG PFL+ HPVAYISR+F LGRVF   W+VNFKF+ E  F+S   +I LL   +  L+LFA ++W      + +F  S     R  +AS+ +   L  E++V T+FV N IGIV  RSLHYQFYSWY+H+LP+LLW+TN+S  +RL +  GVE  +N++P+S LSS +L   H+++L G+W+A
Sbjct:  187 RWHLGLIMFSGAVSVKMNVLLYAPPLLLLMLKAMDISRLLLALAGAALVQILLGLPFLVSHPVAYISRAFNLGRVFIHFWSVNFKFMPEPVFISKGFAIFLLAAHLILLTLFAHYRWCKHEGGLINFLHSRYVSMRHGKASSSSVKVLTKEHIVTTMFVGNFIGIVCARSLHYQFYSWYFHSLPYLLWRTNYSTLMRLILFMGVEMCWNIYPSSSLSSGLLLCLHLIILWGLWSA 421          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs879.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Dolichyl-P-Man:Man(5)GlcNAc(2)-PP-dolichyl1.070e-11976.37mannosyltransferase, family GT58 n=2 Tax=Ectocarpu... [more]
Hypothetical1.470e-8155.98protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical1.680e-7255.13protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=1... [more]
Hypothetical2.050e-7050.79protein n=1 Tax=Corethron hystrix TaxID=216773 Rep... [more]
Hypothetical2.940e-7053.62protein n=2 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Hypothetical1.550e-6649.21protein n=1 Tax=Corethron hystrix TaxID=216773 Rep... [more]
Dolichyl-P-Man:Man(5)GlcNAc(2)-PP-dolichyl1.670e-6645.74mannosyltransferase, family GT58 n=1 Tax=Tribonema... [more]
EOG090X04XE1.060e-6449.78n=7 Tax=Daphnia TaxID=6668 RepID=E9FQN9_DAPPU[more]
hypothetical1.700e-6446.81protein n=1 Tax=Acytostelium subglobosum LB1 TaxID... [more]
dol-P-Man:Man(5)GlcNAc(2)-PP-Dol1.830e-6449.79alpha-1,3-mannosyltransferase-like n=2 Tax=Prosopi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs879contigH-canaliculatus_M_contigs879:4808..6540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FLD1
Preferred nameALG3
PFAMsALG3
Model size702
Max annot lvl2759|Eukaryota
KEGG koko:K03845
KEGG ReactionR06258
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
KEGG ModuleM00055
Hectar predicted targeting categorysignal peptide
GOsGO:0000030,GO:0000033,GO:0003674,GO:0003824,GO:0004584,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006629,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0034645,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0052925,GO:0070085,GO:0071704,GO:0097502,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Exons4
Evalue1.75e-120
EggNOG OGsKOG2762@1|root,KOG2762@2759|Eukaryota
EC2.4.1.258
Descriptiondol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase activity
Cds size702
COG categoryM
CAZyGT58
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854173.5657732-CDS-H-canaliculatus_M_contigs879:4807..49571696854173.5657732-CDS-H-canaliculatus_M_contigs879:4807..4957Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs879 4808..4957 +
1696854173.5787241-CDS-H-canaliculatus_M_contigs879:5294..56601696854173.5787241-CDS-H-canaliculatus_M_contigs879:5294..5660Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs879 5295..5660 +
1696854173.5886216-CDS-H-canaliculatus_M_contigs879:5924..60681696854173.5886216-CDS-H-canaliculatus_M_contigs879:5924..6068Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs879 5925..6068 +
1696854173.5984178-CDS-H-canaliculatus_M_contigs879:6498..65401696854173.5984178-CDS-H-canaliculatus_M_contigs879:6498..6540Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs879 6499..6540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs879.1.1prot_H-canaliculatus_M_contigs879.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs879 4808..6540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs879.1.1

>prot_H-canaliculatus_M_contigs879.1.1 ID=prot_H-canaliculatus_M_contigs879.1.1|Name=mRNA_H-canaliculatus_M_contigs879.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=234bp
RWRLGCVSYSLAVGVKMNILLFAPGLLLLLLQAKGIAGTALCLSICATVQ
LLLGAPFLLQHPVAYISRSFELGRVFKFEWTVNFKFLSEDAFVSPVLSIA
LLVLTVTTLSLFAFKWVGSAQAVESFADSANAGRGSRASNDANFHLHPEY
VVKTLFVSNIIGIVFCRSLHYQFYSWYYHTLPFLLWQTNFSVAVRLAVLC
GVEFGFNVFPASPLSSAVLQVCHILLLAGVWTAP
back to top

mRNA from alignment at H-canaliculatus_M_contigs879:4808..6540+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs879.1.1 ID=mRNA_H-canaliculatus_M_contigs879.1.1|Name=mRNA_H-canaliculatus_M_contigs879.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1733bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs879:4808..6540+ (Hapterophycus canaliculatus Oshoro7m male)
AGGTGGCGCCTGGGCTGCGTGAGTTACAGCCTGGCGGTGGGCGTCAAGAT GAACATCCTCCTCTTTGCTCCGGGTCTCCTGCTGCTTCTTTTGCAGGCGA AAGGGATCGCCGGCACAGCTTTGTGCCTTTCCATTTGTGCTACAGTACAG GTGCGAGCAGGCGAAAGGGCAGCCAGGCAACCTTGTTGTTCGGGAGCCTC TACCGCAAGGTGTCGTAGCTTTTCCGCGGTGTAAGCAGATTTGCGAGGGT GCTGTTTTCGCTTTGTATTTTGCTCTCGCTTTGTGGTTACTGTGATCACG GAGGTTGCGACCTTGGGCTTGATCGGCTAGGACTGTGTAACTGATTTGTA GCAGCGCAAGCTTTCCCCCCCTGCCCGAATGTTCAGTGTGTGCCCGTCGA CGGTTCTTGTTTGAGCTTCAAGTATTGGTTTGCCTGCTTGTCGGTGCTCG ACCCAATTCTCTGCTTCGTCTCCGCCTCGTCCAACAGCTGCTGCTCGGAG CACCATTTCTCCTACAACACCCCGTGGCCTACATCTCCCGATCATTCGAG CTTGGTCGAGTGTTCAAGTTCGAGTGGACGGTGAACTTCAAGTTCCTAAG TGAGGACGCTTTTGTGAGCCCGGTATTGTCGATTGCTCTTCTGGTTCTTA CCGTTACGACCCTTTCGCTCTTTGCATTCAAGTGGGTGGGGTCTGCGCAA GCGGTAGAGTCTTTCGCTGACAGCGCGAACGCCGGAAGGGGCTCACGGGC TTCGAATGATGCCAATTTCCACCTACACCCGGAGTACGTCGTCAAGACCC TCTTCGTCTCGAACATCATTGGCATCGTCTTCTGCCGAAGTTTGCACTAC CAGGTGGGGTCGGAGCTGCTGAAAACGATTGAACACTACCCTCTGCAGTC AACTACACTTATCGTGATCTTCAGTCCCTTTGCGTCGATGTGGTTGCTCG CACTATAAGCGCTTTTGAAGAGTAGAACCTGCAGTGCTGCGAGTCGGGTA GATTTGACGCGTGGGTCACACTATCGCATCCTGCACTACCTACACGAGTC TCAAACAGATCAGGCTCAACGTGCTTCGTCGTCAACAGTTGTACTTTCGT CCACCCTTGCTTCGCAGTTCTACTCTTGGTACTACCACACGCTCCCCTTC CTCCTGTGGCAAACGAATTTCTCGGTGGCCGTCCGCCTGGCGGTGCTGTG TGGCGTGGAGTTTGGCTTCAATGTCTTCCCCGCTTCTCCTCTCTCTTCTG CCGTGCTTCAGGTGAATCGCCGTGGGAACACGTGGTTGAGATGTCTGTTG TTGACTACGCTGCCGTGACGTTGCGCTAGCGACAGCGGCTGCTCTTCAAC GAACATGATAATAATGAAGTGCTTCCACATAAATCAAGAGATTCGAGCCG AAAGTATTCATCATGTGATTTTTCGTTGCTTTTCTCCACTTGCTTTTTGT GAGGAACGGCTTGAACAGCCACGCCAGTGTGGGCGAGATGGTGCGAACAT TATTTGATCATTTGCTGGGTGTCGTTTTGAGTTCGTCTCACCGCCGTATT TCAATTACCGGCCGCCTCAGGACCACCACTAAATCAAATCGGTCTTCGGA AGCCGCAGCAAAGAAACGTGGGTGAATAACGTTCACGAGGGCTCACATTC CAATCAAACGGGCCGTTGCTGCCCCCGATCTGTCGATGCAGGTTTGTCAT ATTTTGCTTCTCGCAGGTGTTTGGACTGCACCT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs879:4808..6540+

>mRNA_H-canaliculatus_M_contigs879.1.1 ID=mRNA_H-canaliculatus_M_contigs879.1.1|Name=mRNA_H-canaliculatus_M_contigs879.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=702bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs879:4808..6540+ (Hapterophycus canaliculatus Oshoro7m male)
AGGTGGCGCCTGGGCTGCGTGAGTTACAGCCTGGCGGTGGGCGTCAAGAT
GAACATCCTCCTCTTTGCTCCGGGTCTCCTGCTGCTTCTTTTGCAGGCGA
AAGGGATCGCCGGCACAGCTTTGTGCCTTTCCATTTGTGCTACAGTACAG
CTGCTGCTCGGAGCACCATTTCTCCTACAACACCCCGTGGCCTACATCTC
CCGATCATTCGAGCTTGGTCGAGTGTTCAAGTTCGAGTGGACGGTGAACT
TCAAGTTCCTAAGTGAGGACGCTTTTGTGAGCCCGGTATTGTCGATTGCT
CTTCTGGTTCTTACCGTTACGACCCTTTCGCTCTTTGCATTCAAGTGGGT
GGGGTCTGCGCAAGCGGTAGAGTCTTTCGCTGACAGCGCGAACGCCGGAA
GGGGCTCACGGGCTTCGAATGATGCCAATTTCCACCTACACCCGGAGTAC
GTCGTCAAGACCCTCTTCGTCTCGAACATCATTGGCATCGTCTTCTGCCG
AAGTTTGCACTACCAGTTCTACTCTTGGTACTACCACACGCTCCCCTTCC
TCCTGTGGCAAACGAATTTCTCGGTGGCCGTCCGCCTGGCGGTGCTGTGT
GGCGTGGAGTTTGGCTTCAATGTCTTCCCCGCTTCTCCTCTCTCTTCTGC
CGTGCTTCAGGTTTGTCATATTTTGCTTCTCGCAGGTGTTTGGACTGCAC
CT
back to top