mRNA_H-canaliculatus_M_contigs8664.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8664.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8664.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs8664.1.1 vs.
Match: DUF1713 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J7A0_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 4.240e-29
Identity = 70/117 (59.83%), Postives = 81/117 (69.23%), Query Frame = 1 
Query:   16 GKWGELSLPLKAAEVFGGFKQAAAGRLQHWASPQALCRASSLVLPGFYQPVPLPRCREHSDGYDDDAEEFREDGAE---GLFDRGLWATSVRRKRVTKMRKHKWRKRRKLQRQSASR 357
            G W   SLP+K  E   G KQA AG LQHWASP AL  A   VLPG  +P  LP+  EH  G ++D +E  E+G +   GL + G+WATSV+RKRVTKMRKHKWRKRRKLQRQSASR
Sbjct:   78 GTWEGSSLPIKVYEAVQGLKQATAGLLQHWASPLALSGAFPFVLPGVGRPALLPQSPEHDQGCEEDEDE-EEEGVDLIGGLSEGGVWATSVKRKRVTKMRKHKWRKRRKLQRQSASR 193
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8664.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
DUF17134.240e-2959.83domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8664contigH-canaliculatus_M_contigs8664:1070..4875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Model size824
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionDomain of unknown function DUF1713, mitochondria
Ec32 orthologEc-05_002590.1
Cds size372
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854167.7017643-UTR-H-canaliculatus_M_contigs8664:1069..15211696854167.7017643-UTR-H-canaliculatus_M_contigs8664:1069..1521Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8664 1070..1521 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854167.717241-CDS-H-canaliculatus_M_contigs8664:1521..18261696854167.717241-CDS-H-canaliculatus_M_contigs8664:1521..1826Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8664 1522..1826 -
1696854167.7338843-CDS-H-canaliculatus_M_contigs8664:4808..48751696854167.7338843-CDS-H-canaliculatus_M_contigs8664:4808..4875Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8664 4809..4875 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8664.1.1prot_H-canaliculatus_M_contigs8664.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8664 1522..4875 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8664.1.1

>prot_H-canaliculatus_M_contigs8664.1.1 ID=prot_H-canaliculatus_M_contigs8664.1.1|Name=mRNA_H-canaliculatus_M_contigs8664.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=124bp
MAILGGKWGELSLPLKAAEVFGGFKQAAAGRLQHWASPQALCRASSLVLP
GFYQPVPLPRCREHSDGYDDDAEEFREDGAEGLFDRGLWATSVRRKRVTK
MRKHKWRKRRKLQRQSASRRVNK*
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mRNA from alignment at H-canaliculatus_M_contigs8664:1070..4875-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8664.1.1 ID=mRNA_H-canaliculatus_M_contigs8664.1.1|Name=mRNA_H-canaliculatus_M_contigs8664.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3806bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8664:1070..4875- (Hapterophycus canaliculatus Oshoro7m male)
ATGGCAATTCTGGGTGGGAAGTGGGGGGAATTATCCCTGCCGCTGAAAGC
AGCTGAGGTTTTCGGAGGTGGGTGTCTGCCCTTCACAACATGTCTACCAT
GCATTCCAGCCCTGGGGCCCACGATGGTCGACCTCTCCTCGCTGCCGTGG
GGTGGTGGCCATGACTGCAGAAGGGGCCTACCTTATTCCGCCTATGTGTA
GGCATTACAACGGTCACTTTCCGCCCCGATGGAATGCGCCAGAGATCCAT
CCGAACTTGATTTTCGCATGCGGGGCCTCTCGCCCAGAACATGCTGCTGA
ATATTGACTGGATACTTCCACAGAGTAACGTAAAGGGTCTTTAAAATACG
AGTATTTTTCCCTTTTTCGGAGTTTAAGAGACGAGACATACTGCTCTACT
GGACCGTCCGTTTGATAATGTCAATCCGACAACCACCGGTATTACTCGTA
ACGGACATGCTGTTGCTGGCGGTTGTGCGGCGACTGTCGAAGTCTGAACT
GAGTTTTGATTCAAAAGTAAGCTACCGCCCGCAGCTTGGTTCGTCGTGTC
GTGCAGCACTCTCTCGGGCATTCCTGTTACCGAGTTACCTACACCTCTGA
GTTACTGCGGTCCTGTCCTACTCCGCGAGGTTGACAAACTGATCTGTTAG
TGCCCTCCCCGCAGTCACGGGTCGGTTAACCTCCTTGGATTGAGTGTGGG
GAACGAGCCCATTGCCATTTTTCGCTCCGTATACCCGTTCTGGTTTGCCG
TATATTGTTGTCGTCAGTGTGGCGTGCATTTCTTGAGACTGGAAAGGTCC
CATTGTTGACTTTTTTCCCGGTGTCGCAGGCAAGCAGCAACTCGACAGCT
GTATACGGTAGCAAGCTGCTTTGTTGACAGGGTACTTTGTAGACAACACC
ATGCGTAATTTGATGGTGGGCAAAACCCGTATCTGATACGGTAGTCCGTC
CAATGATCCACTCGAGGAAGCACCTAGTACTATTTGTGACTTCTGGCATG
AAAGTGAAAAGACCCAACGAAAAACATGCCATCCGTACTACAGCAGTATT
CGGCATCCAAAAGCGAAAATGCCATGTCTCACGCCTTATCCGTATCCGTA
CATGTCCACGGGCGACGTCACCCAAGTTGATCTGGATCGACCACGAACAT
AGTTCGAAAAAGGGGAATAGGATATATGCGGCAGTCCGAGTGGCCCATAA
CTGTAACAACACCTCATCGAGACTACGCAGGAGGCAAATCCTTTCTTCGT
CTTGGAAATCCTTTTCGCAAAAACGCCAACCGAAATGGATTAAGGAAACC
TGTCTATGAGGCGAGGAACCCGACCTTTGGATCACAATGAGGGGGTGCTC
TACACGACCCACGGGAACCCTTACGTCCCTAGGATTCACTTACAGTTTCG
TCCGACAGCTTCATACCAGAGAGGGGAAGAGATAGATGAGCGGTAGACTG
CTGCTGCACCGGCATGGCAATTTCCGCTTAGTCCCATCCCCCAACTCAAT
CATAACTACATACTACTTTTCATATTTCGTACAACAGTAGTAAGAAATAG
GAGGCGGGGGGGCGCGCAGTAATGCGGGACATGTCCAAAATTTCAAAATC
TTAGTCTTCAGTGTGCTGGCTGAAAGATTTGTATGTTCGCGCAATTGAAA
CACTTCTGGATTACAAACCTACTCCAAAGTCACTGATCATAGTTACATAC
TTGTACAAGTTAACAATTCACCTCAGCCCGTTCGTGACGGATTCTTTTTT
GCCGTTTTAGAGAGCTGAGAAGGTTCCTCGGTCGTAAGGGCCTACTACTG
CCATCCAACGACGACGCACGCATACAAAGCCAGGTGCACGGAACTTGGAG
ACGCTGTAGGAGGTCGGCTTGACCTGAAAGGAGGCATAGTTGAAAAGCGA
ACAACTTGAAAACGCTCCATGGATTCAGGGTAACGGAGAAGGTCACATCA
TAACAGGGGTTTGGTCACGCTTTTCCACGTGCGTGTGCACCCATCCGGCC
TGTGCGCTACAACAGCTACCTGCAGCAGAGTATTCAATGCTGCTGCTGGT
GTGAAGAACCTACACCCTTTTATTCGACTTAGACTTCCTCCCCAAGCTGG
TATGGTACACGCACCTGCACTTCATGGTATCAGCACATACGCCTATTACG
AGATTCCGAGCCAAATAAGCCACATTCTCGTGATTTTGAAGTCACTCTAC
TTAAAAAGAAGGTGTGGAGCGAGTGCTATCGGCGTTACTATCGACACTTC
GTCACCTATTCTAGACATAGAAAAGCGTTTCTGGTGCTCTTGCTCCTCTT
TCTCGTGACGAGAGGGCACAGAAGCCGGCGAAGACAGCAGCAAAGCAAAC
CACAACAATCGTACGAGTGTGCTCGACCGGTTCCGTTCAGCGGAAAGTAA
AGTTGGCCGGTGGGTAGGACACATGTGCCCGGACGCGCGATGGACATATC
TCTCCATTTATCTCTTATCTACGGCTGTTGTCTTTCTCCCTCTACTGTCT
AGTTTAGGCATCATAGCCACAAGAACACACAGCGCCTTCCCCACCTCGAG
TTCTGCGTTAACTCTCTGCTGCATGTTGTCTAGAGGTATGTGTACCCCGC
ATAGCGCAGCATGTGCAACTCCCTTTCGCGGTTGTGGTGTGGAGAAGTAC
CTCTACTGTCCCCGTTCGTATATTCTTTTTGCTGGATCGATCTAAACGCG
CGGCGAGGCTCTTGTTTTCAGCGCTACCTGACCAAGTTCTGTGCATGTAT
CAAAATTTCGACACCTTGAGCGGCATTGCAGTGTGATGCCATATGAAAGA
AACCCTGTGGAACACCAGCTGGGCTCGGGTTTTGTACGAAGAGAGAGCCG
ACGATGGTCCGCTTGAACACGTACATTATTTGGGAGGCAAAAATAACGAG
TAGTCGATCCCCCAGGCCCTTTCATTAGTGATGCTTTTTGGGAGCGATTC
CTAGAAGGTAAAATAAGTTGCTCAATCCTTAGTCTTCATGCAATCGGTTG
CCGCCGGTCCTTTATCGAATTCCCCCGCCCCGTCGATTTCTCTTTCTAGG
CTTCAAGCAAGCCGCGGCAGGTCGGTTACAGCACTGGGCTTCCCCACAAG
CCCTTTGCCGAGCATCCTCTCTCGTCTTGCCCGGGTTCTACCAACCGGTG
CCGTTGCCACGGTGCCGGGAGCACAGCGACGGATACGACGACGATGCGGA
GGAATTCAGGGAAGATGGTGCCGAGGGGCTATTCGACAGGGGCTTGTGGG
CGACTAGCGTACGGCGGAAGCGGGTGACGAAGATGAGGAAGCACAAGTGG
AGGAAAAGACGGAAGCTTCAGCGTCAATCCGCGTCTCGGAGAGTCAACAA
GTAGATTCCTCCCCGTCAGCGTTTGTACCTCTGAGCAGCGTAGATCGCCC
GTGATGCAGTTCGAGTCCGGCGATCCCGCGTAGTATTTGGTTGTGATATC
GTGCTGCGGTTGTTCGAACAATCGGTACATGAGAGGGATAAGAAGTGGTA
GATCACGTTGAAGTAGGTCTCACGCCTACGGGTTCAGACGGTCACATGAG
GTCGTCTCTCCCCTCCTCGATGGTCTAATTGGATTTTTATGTCAACGTAC
ATACTCGGTCGTTGTGCGGGCGATGCTGCGCTACGTTTTACGAGCGCAAT
TTGAAGAACCATGTTCGGCGATAAAGTTGATTTCAGTCATCAGGGGCAGG
TCCGTTTTGGTCGCTTTCCTTGAATCAACCGCGCTTACAGCTGGGAAAGC
GAAAAACATGTCGTGCAACCTACACCCCGCCATCCGTTGTCTACACGTCA
ACTTTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8664:1070..4875-

>mRNA_H-canaliculatus_M_contigs8664.1.1 ID=mRNA_H-canaliculatus_M_contigs8664.1.1|Name=mRNA_H-canaliculatus_M_contigs8664.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=372bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8664:1070..4875- (Hapterophycus canaliculatus Oshoro7m male)
ATGGCAATTCTGGGTGGGAAGTGGGGGGAATTATCCCTGCCGCTGAAAGC
AGCTGAGGTTTTCGGAGGCTTCAAGCAAGCCGCGGCAGGTCGGTTACAGC
ACTGGGCTTCCCCACAAGCCCTTTGCCGAGCATCCTCTCTCGTCTTGCCC
GGGTTCTACCAACCGGTGCCGTTGCCACGGTGCCGGGAGCACAGCGACGG
ATACGACGACGATGCGGAGGAATTCAGGGAAGATGGTGCCGAGGGGCTAT
TCGACAGGGGCTTGTGGGCGACTAGCGTACGGCGGAAGCGGGTGACGAAG
ATGAGGAAGCACAAGTGGAGGAAAAGACGGAAGCTTCAGCGTCAATCCGC
GTCTCGGAGAGTCAACAAGTAG
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