mRNA_H-canaliculatus_M_contigs8640.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8640.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTJ7_9PHAE) HSP 1 Score: 400 bits (1029), Expect = 9.640e-130 Identity = 238/381 (62.47%), Postives = 272/381 (71.39%), Query Frame = 1
Query: 1 RHAWCCLRDAGERAGMRRVLTNRPWGEHARALGGGKLAADSEVLKLMSFAAQHFLRELLNELKVIAWQRRGGLSADLLEGVETRLRDPGAQGSPGEELRRRLVPKLPPVEELPRELLEEEEEAHRRECEEREERWDSELAETLTTAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLSKQQLAASEFARRVAIKHGIGVVAALMKKKELDAVGAAGADASXXXXXXXAVPASGKAPDRMDVSRQR-----KAGXXXXXXXXGSRSVRPTDGGGTKRPLDPLADDNEPLQTVRSIRRRLVLGPLGDGXXXXXXXXXXXXXXXAQEGTLEADGKGAAARVEINNADLAELLRSTKPKGDPRKWARIFYRAQNSRQGTHA 1128
RHAWCCLRDAGE+AGMRRVL RPWG L GGK AA S+VLKLMSFAAQ++L+ +L+EL V+A+QR+GGLSA+LL GVE+RLRDP + P ELR+ LVP+LP V LPR +LE+ EEAHR+ECEEREERWD ELA+TLTTAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLSK+QLA SEFARRVA+KHGIGVVAALMKKKEL A XXXXXXX D MDVS + +G G + G G KRPLDPLA D+ ++TVR+IRRRLVLG G ++E A +EINNADLAELLRSTKP+GDPRKWAR+ RAQNSR+G HA
Sbjct: 451 RHAWCCLRDAGEKAGMRRVLKERPWGNPREPLEGGKEAAGSDVLKLMSFAAQYYLKNILDELAVVAYQRKGGLSAELLSGVESRLRDPSVK-DPKAELRQSLVPRLPSVRNLPRVILEKTEEAHRKECEEREERWDVELADTLTTAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLSKEQLAGSEFARRVAVKHGIGVVAALMKKKEL-ASXXXXXXXXXXXXXXXXXXXXXXXDDPMDVSDRAITGDSSSGGRSSKDSKGKAGNKRAPGTGLKRPLDPLASDDA-VETVRNIRRRLVLGAPDHGDDDDDIGSGEGSTPPSEE---------QEASLEINNADLAELLRSTKPRGDPRKWARVLLRAQNSRKGVHA 819
BLAST of mRNA_H-canaliculatus_M_contigs8640.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB6_ECTSI) HSP 1 Score: 390 bits (1003), Expect = 3.670e-128 Identity = 247/383 (64.49%), Postives = 279/383 (72.85%), Query Frame = 1
Query: 1 RHAWCCLRDAGERAGMRRVLTNRPWGEHARALGGGKLAADSEVLKLMSFAAQHFLRELLNELKVIAWQRRGGLSADLLEGVETRLRDPGAQGSPGEELRRRLVPKLPPVEELPRELLEEEEEAHRRECEEREERWDSELAETLTTAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLSKQQLAASEFARRVAIKHGIGVVAALMKKKELDAVGAAGADASXXXXXXXAVPASGK--APDRMDVSRQRKAGXXXXXXXX-----GSRSVRPTDGGGTKRPLDPLADDNEPLQTVRSIRRRLVLGPLGDGXXXXXXXXXXXXXXXAQEGTLEADGKGAAARVEINNADLAELLRSTKPKGDPRKWARIFYRAQNSRQGTHA 1128
RHAWCCLRDAGERAGMRRVL RPWG L GGK AA S+VLKLMS AAQ++L+ +L+EL V+A+QR+GGLSA+LL GVE+RLRDP + P ELR+ LVP+LP V++LPR LE EEAHR+ECEEREERWD ELA+TLTTAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLSK+QLA SEFARRVA+KHGIGVVAALM XXXXXXX A D MDVS + G XXXX G + T G G KRPLDPLA D+ ++TVR+IRRRLVLG DG XXXXXXXXX + G +EINNADLAELLRSTKP+GDPRKWAR+ +RAQNSR+G HA
Sbjct: 250 RHAWCCLRDAGERAGMRRVLKERPWGNPREPLEGGKEAAGSDVLKLMSLAAQYYLKNMLDELAVVAYQRKGGLSAELLSGVESRLRDPSVK-DPKAELRQSLVPRLPRVQDLPRVTLERTEEAHRKECEEREERWDVELADTLTTAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLSKEQLAGSEFARRVAVKHGIGVVAALMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADDPMDVSDRPTTGDSSSXXXXSKDSNGKAGNKRTPGAGLKRPLDPLASDDA-VETVRNIRRRLVLGAPDDGDXXXXXXXXXRGVGATPPSEEQEAG------LEINNADLAELLRSTKPRGDPRKWARVLFRAQNSRKGVHA 624
BLAST of mRNA_H-canaliculatus_M_contigs8640.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4T0_9PHAE) HSP 1 Score: 134 bits (338), Expect = 7.230e-31 Identity = 89/224 (39.73%), Postives = 124/224 (55.36%), Query Frame = 1
Query: 1 RHAWCCLRDAGERAGMRRVLTNRPWGEHARALGGGKLAADSEVLKLMSFAAQHFLRELLNELKVIAWQRRGGLSADLLEGVETRLRDPGAQGSPGEELRRRLVPKLPPVEE---------------------LPRELLEEEEEAHRRECEEREERWDSELAETLTTAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLSKQQLAASEFARRVAIKHGIGV 609
R AWC LRDAG RAGMR+VL RPWG+ GGG+ AA+S+VL+ +L+ +L EL V+A+QRRGGLS +LL+G+E R+ DP + GS L LVP+ + EEAHRR C +RE W++ +AE + A RK +R + P E + ++SGWLS++Q+AA+EFARRV +K G+G+
Sbjct: 343 RSAWCGLRDAGARAGMRKVLQPRPWGDALAPSGGGQEAANSQVLEA-------YLKRVLTELSVVAYQRRGGLSEELLQGLEERMEDPRSPGS-ALILYEGLVPRFRRYQPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEAHRRSCLKREAGWEARVAEVMAAAHGGRKSRNKRRSLTNAPSRRVGVESLSAWSESGWLSREQVAANEFARRVGVKRGVGL 558
BLAST of mRNA_H-canaliculatus_M_contigs8640.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYX3_ECTSI) HSP 1 Score: 132 bits (332), Expect = 4.430e-30 Identity = 89/224 (39.73%), Postives = 118/224 (52.68%), Query Frame = 1
Query: 1 RHAWCCLRDAGERAGMRRVLTNRPWGEHARALGGGKLAADSEVLKLMSFAAQHFLRELLNELKVIAWQRRGGLSADLLEGVETRLRDPGAQGSPGEELRRRLVPKLPPVE---------------------ELPRELLEEEEEAHRRECEEREERWDSELAETLTTAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLSKQQLAASEFARRVAIKHGIGV 609
R AWC LR+AG RAG+R+VL RPWG+ GGG+ AA+S+VL+L+S A Q +L+ +L EL V+A+QRRGGLS +LL+G+E R+ DP + GS L LVP+ P E E PRE+L EE AHRR C ERE W++ +AE + A+ V AA+EFARRV K G+G+
Sbjct: 378 RSAWCGLRNAGARAGLRKVLQPRPWGDPLAPSGGGQEAANSQVLELISAATQAYLKRVLTELSVVAYQRRGGLSEELLQGLEERMEDPRSPGS-ALVLYEGLVPRFPRYESGGSXXXXXXXXXXXXXXXXXEDPREVLRREEGAHRRSCLEREAGWEARVAEVMAAADGV-------------------------------------AANEFARRVGFKRGVGL 563 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8640.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs8640.1.1 >prot_H-canaliculatus_M_contigs8640.1.1 ID=prot_H-canaliculatus_M_contigs8640.1.1|Name=mRNA_H-canaliculatus_M_contigs8640.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=381bp RHAWCCLRDAGERAGMRRVLTNRPWGEHARALGGGKLAADSEVLKLMSFAback to top mRNA from alignment at H-canaliculatus_M_contigs8640:397..4943+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs8640.1.1 ID=mRNA_H-canaliculatus_M_contigs8640.1.1|Name=mRNA_H-canaliculatus_M_contigs8640.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=4547bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8640:397..4943+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8640:397..4943+ >mRNA_H-canaliculatus_M_contigs8640.1.1 ID=mRNA_H-canaliculatus_M_contigs8640.1.1|Name=mRNA_H-canaliculatus_M_contigs8640.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1143bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8640:397..4943+ (Hapterophycus canaliculatus Oshoro7m male)back to top |