mRNA_H-canaliculatus_M_contigs8431.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8431.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8431.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs8431.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Y0_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 4.630e-73
Identity = 111/137 (81.02%), Postives = 119/137 (86.86%), Query Frame = 1 
Query:    1 GVPSCVSYRLASQSSSLQLRYFGPGPKVFPDAIFFILVMSQWFLAGWSVVGAALYFRLFNGNRTCSPLLRHWTLLVVIIGFLSCLLAVCYSGIMCCMLGGPF-RSRRRSGESETDRFHGDVPSSSDGAGAINAPGLM 408
            GVPS +S+RLA+QSSSLQ RYFGPGPKVFPD IFFILV+SQWFLAGWSVVGAALYFRLF GNR CSPLLRHWTLLVVIIGFLSCLLAVCYSGIMCCMLG PF RSR R+G  E D+FH D+PSSSD     N PG+M
Sbjct:  105 GVPSTISHRLAAQSSSLQHRYFGPGPKVFPDTIFFILVVSQWFLAGWSVVGAALYFRLFTGNRMCSPLLRHWTLLVVIIGFLSCLLAVCYSGIMCCMLGAPFSRSRGRNGSGERDQFHADLPSSSDSTSTGNEPGMM 241
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BLAST of mRNA_H-canaliculatus_M_contigs8431.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV38_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 5.520e-50
Identity = 82/92 (89.13%), Postives = 86/92 (93.48%), Query Frame = 1 
Query:    1 GVPSCVSYRLASQSSSLQLRYFGPGPKVFPDAIFFILVMSQWFLAGWSVVGAALYFRLFNGNRTCSPLLRHWTLLVVIIGFLSCLLAVCYSG 276
            GVPS +S+RLA+QSSSLQ RYFGPGPKVFPD IFFILV+SQWFLAGWSVVGAALYFRLF GNRTCSPLLRHWTLLVVIIGFLSCLLAVC  G
Sbjct:  162 GVPSTISHRLAAQSSSLQHRYFGPGPKVFPDTIFFILVVSQWFLAGWSVVGAALYFRLFTGNRTCSPLLRHWTLLVVIIGFLSCLLAVCSWG 253
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8431.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.630e-7381.02protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.520e-5089.13protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8431contigH-canaliculatus_M_contigs8431:55..2590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Model size411
Hectar predicted targeting categorysignal anchor
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_005050.1
Cds size411
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854154.2593644-CDS-H-canaliculatus_M_contigs8431:54..1351696854154.2593644-CDS-H-canaliculatus_M_contigs8431:54..135Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8431 55..135 +
1696854154.2743583-CDS-H-canaliculatus_M_contigs8431:847..9651696854154.2743583-CDS-H-canaliculatus_M_contigs8431:847..965Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8431 848..965 +
1696854154.2893248-CDS-H-canaliculatus_M_contigs8431:1475..15441696854154.2893248-CDS-H-canaliculatus_M_contigs8431:1475..1544Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8431 1476..1544 +
1696854154.3041813-CDS-H-canaliculatus_M_contigs8431:2447..25901696854154.3041813-CDS-H-canaliculatus_M_contigs8431:2447..2590Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8431 2448..2590 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8431.1.1prot_H-canaliculatus_M_contigs8431.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8431 55..2590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8431.1.1

>prot_H-canaliculatus_M_contigs8431.1.1 ID=prot_H-canaliculatus_M_contigs8431.1.1|Name=mRNA_H-canaliculatus_M_contigs8431.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=137bp
GVPSCVSYRLASQSSSLQLRYFGPGPKVFPDAIFFILVMSQWFLAGWSVV
GAALYFRLFNGNRTCSPLLRHWTLLVVIIGFLSCLLAVCYSGIMCCMLGG
PFRSRRRSGESETDRFHGDVPSSSDGAGAINAPGLM*
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mRNA from alignment at H-canaliculatus_M_contigs8431:55..2590+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8431.1.1 ID=mRNA_H-canaliculatus_M_contigs8431.1.1|Name=mRNA_H-canaliculatus_M_contigs8431.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2536bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8431:55..2590+ (Hapterophycus canaliculatus Oshoro7m male)
GGGGTTCCCAGCTGCGTATCGTATCGGCTGGCATCTCAGTCGTCCTCTCT
CCAGCTCCGGTACTTCGGGCCGGGACCAAAGGTACGCACACATGACGTCA
CGCGTGCGCGTGGCGTGGGTGTGTACGGGGATGGCAACTGTCGTGAAAGA
GTGCGGAAATTTCCGTCGCGCACTCTCCCGCTGAAGTGTTTGGCCTCCGC
AAAAGCCCTAGACTGATCGAGTTGCTGCCGCGGTCGGTGTCGGTGCCGTC
GTAGCGTAAGCGTGGTGAGAAAGAAAGCGGCGGCGGCGGTGCGAGGAGAG
AGCGTGTGTCGGCATTGGTCGGAGGTGGTTCCTGCGCTTGGTGGAGGTGG
CGGTGTGCGTCCGTCTCCTTTCGTGACGCGGGTCGATGCCCGCCGTGGTG
GGCATTGTGTGCATGCAGCCTGTTCCGGCTGGCCGTCCGCCTCGTGATGT
TTTCGTGCGAGTAGCAAGCAGAGTCAATTAAAGCCCCGCTCGGTCGCGAA
CCCTTCCTCTCTCTTTCTCCTTTCTCCCGTCTCTCTCCCTGTCCCTCTCT
CTCTCTCTCTCTCTCTCCTCCTGCCGGCGGTCAAATTTCGACGCCCAGGC
GCTCTCATTTCCCAATGCTGCCTTGATGCCAACGTTCACTGCTGGGACTC
TCGCGACGTCCCCAAACGCACCGCGCCACTCGCACAGATGTATCGGCCTG
CAGTTTGGCAAGGTGTCCCGCACCCGGTGCGGCTTGATGACCATCGCGTT
TTCACTCGCTAACCCAAAAACGCACGAACGGAAACGAACGCAGGTGTTCC
CGGATGCGATTTTTTTTATCCTGGTGATGAGCCAGTGGTTTTTGGCGGGC
TGGAGCGTCGTTGGGGCAGCGCTGTACTTCCGGCTGTTCAACGGCAACAG
GACGTGTTCACGTGAGTGCTTCTCTCTCTCTCTCGGCACTATCGGCTTGC
CCTGCCTTGTCTTTGTCTTTTCCTTCTTCCCTGTCTCGTGCGATGGCGGG
GACAGGGCAGCAGCATCCGCTTGCTCCAGACGCAGCGTGGTGCAGCTCGT
TTGTTTGAAGTTGTTCGCCGACTACGACCATTTGAGGCTCTGTTTTGTTG
GAAGTCGTCTTCCGATCTTTGGATAAACACCGCCCGAGCGTCCTCTGCCG
TGCACCTCAGGTTCGATTTTCGCACGCATATACGATGCCTGGCGCTTCGC
CTAACGACAACACACCCTACCTCGCATCGCATCCCGCGGAACCCCATCCT
TTGTCCTGCTGCCGGTGTCGCGGCTCTCCCCTGCTCGGGATCTCGCCGCG
TCCTCCTCCTAACGACGTGGCAAACAATCGAAAAAAATGGCCGGGGTGCG
ACGACGACGACGAACGAACGTCGTTTGCGTGGCGGCGGGCGGTCTGCGGG
TCTGTGGGATGACGCGTGCAGCCCTGCTCCGCCACTGGACGCTGCTGGTG
GTAATCATCGGGTTCCTGTCCTGCCTCCTGGCCGTCTGCTGTGAGTTTGT
GTGGAGTCTGTTGGGTTTCTTGAGGCTGTGACAGCGGCGCTTATTGGCGT
TGTTTGGATTAACCCCGTCGATTCAAAGCATGCACTGGCGTTTGCGCGTT
GTTTTGGCGGTGCTGTGAAGATGGGCAGTCTAGATGCGGTTCCTCTCTCT
CTCTCGTCACGTCGGCTGTGCCGGCGGTCTCCGTGCACATGCGCCACCCG
CAGCACTCCTGAGGTTCTGAGCAGGGGCCAGGCCGGCGTTTTTTTTGTCA
AGACAGTCAGCGCCAGCAGCACGCTTCTTCTGCTTGGTGTGTTGTTCGGA
CGGGGTGTTTTTGTCTGCCGCGGAGGGGCGGAGAAAACGTAAGAACGCTC
ACGGCTGGCTGGGCAGCTGGAGTCGGCGCAGAGGAAATAACAAGCGAACA
AATGGTCTCGGTTGCAAGAGGGTGGAGGCAAGAGGCACGAAATGCTCGGA
AGACCGCAAACGAGTGGACCGCACGGCCCAGAGCGTCTTTCCTTGCGGTG
TGCTGCCGTTCGCCGCCGAGCAGCAGGGGTATGCTCGCTAGCATGCCCGG
TGGGATGCTCCACGCTGCGGCGGCGTCCGGAGGACGGTGTGCCGTTGACC
AGATCGTGAACGGATGCGCCTCTCTCCGCCAAGACCCTGTCGCTGCCTCT
GTCGTTCTCGCGCCCGACGGGCCCGCCTGCAGAGAGGGCATGTGTCTCGT
TCTTGCCTCTCATGACGGACCCTTGCTTCCCTCCCCCGCACAGGCCCTTT
CCCCTCACCCTCGTGTGCGCATGCGCGCAATCACCGTCATCCTCTCTCCC
CCTCCCCCCGCTCTGCAACTTTTGTTGTCCTCAACATCGATCGATCTGTT
TGGCCGTCGTCGTTGATGATTTTTTTTTCGGGTGTCTCTCCAGACTCGGG
GATCATGTGCTGCATGTTGGGGGGGCCGTTCAGGAGCCGCCGAAGGAGCG
GCGAGAGCGAGACGGATCGTTTCCACGGAGACGTGCCCTCCAGCAGCGAC
GGCGCCGGCGCGATCAACGCGCCGGGTTTGATGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8431:55..2590+

>mRNA_H-canaliculatus_M_contigs8431.1.1 ID=mRNA_H-canaliculatus_M_contigs8431.1.1|Name=mRNA_H-canaliculatus_M_contigs8431.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=411bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8431:55..2590+ (Hapterophycus canaliculatus Oshoro7m male)
GGGGTTCCCAGCTGCGTATCGTATCGGCTGGCATCTCAGTCGTCCTCTCT
CCAGCTCCGGTACTTCGGGCCGGGACCAAAGGTGTTCCCGGATGCGATTT
TTTTTATCCTGGTGATGAGCCAGTGGTTTTTGGCGGGCTGGAGCGTCGTT
GGGGCAGCGCTGTACTTCCGGCTGTTCAACGGCAACAGGACGTGTTCACC
CCTGCTCCGCCACTGGACGCTGCTGGTGGTAATCATCGGGTTCCTGTCCT
GCCTCCTGGCCGTCTGCTACTCGGGGATCATGTGCTGCATGTTGGGGGGG
CCGTTCAGGAGCCGCCGAAGGAGCGGCGAGAGCGAGACGGATCGTTTCCA
CGGAGACGTGCCCTCCAGCAGCGACGGCGCCGGCGCGATCAACGCGCCGG
GTTTGATGTAG
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