mRNA_H-canaliculatus_M_contigs8328.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8328.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU70_9PHAE) HSP 1 Score: 118 bits (296), Expect = 9.590e-30 Identity = 62/67 (92.54%), Postives = 63/67 (94.03%), Query Frame = 1
Query: 1 ALMAGAVSRSIAHTCVHPAIVVKTLMQGRGTSSQLSHLSLKLLRRGAGAQFVMSLPHGAFNYATLEV 201
AL AGAVSRSIAHT VHPAIVVKTLMQGRGTS+QLS LSLKLL RGAGAQFVMSLPHGAFNYATLEV
Sbjct: 210 ALFAGAVSRSIAHTSVHPAIVVKTLMQGRGTSAQLSSLSLKLLSRGAGAQFVMSLPHGAFNYATLEV 276
BLAST of mRNA_H-canaliculatus_M_contigs8328.1.1 vs.
Match: Mitochondrial (energy transfer protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP70_ECTSI) HSP 1 Score: 108 bits (270), Expect = 4.500e-27 Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 1
Query: 4 LMAGAVSRSIAHTCVHPAIVVKTLMQGRGTSSQLSHLSLKLLRRGAGAQFVMSLPHGAFNYATLEV 201
+ AGAVSRSIA TC+ PA VVKTL+QGRGT+SQLS+LS KLL RGAGAQFVMSLPHGAFNYATLEV
Sbjct: 1 MFAGAVSRSIAQTCMQPANVVKTLLQGRGTASQLSNLSFKLLTRGAGAQFVMSLPHGAFNYATLEV 66
BLAST of mRNA_H-canaliculatus_M_contigs8328.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLA3_9PHAE) HSP 1 Score: 108 bits (269), Expect = 7.500e-26 Identity = 54/67 (80.60%), Postives = 61/67 (91.04%), Query Frame = 1
Query: 1 ALMAGAVSRSIAHTCVHPAIVVKTLMQGRGTSSQLSHLSLKLLRRGAGAQFVMSLPHGAFNYATLEV 201
A+ AGA+SRSIA TC+ PA VVKTL+QGRGT+SQLS+LS KLL RGAGAQFVMS+PHGAFNYATLEV
Sbjct: 361 AMFAGAISRSIAQTCMQPANVVKTLLQGRGTASQLSNLSFKLLTRGAGAQFVMSVPHGAFNYATLEV 427
BLAST of mRNA_H-canaliculatus_M_contigs8328.1.1 vs.
Match: Mitochondrial (energy transfer protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P9_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 2.320e-22 Identity = 47/65 (72.31%), Postives = 55/65 (84.62%), Query Frame = 1
Query: 4 LMAGAVSRSIAHTCVHPAIVVKTLMQGRGTSSQLSHLSLKLLRRGAGAQFVMSLPHGAFNYATLE 198
+ AGA+SR+IA T + PA VVKTL+QGR TS QL HLS KLL RGAGAQF++SLPHGAFN+ATLE
Sbjct: 1 MFAGALSRAIAQTAMQPANVVKTLLQGRSTSGQLKHLSFKLLTRGAGAQFLLSLPHGAFNFATLE 65
BLAST of mRNA_H-canaliculatus_M_contigs8328.1.1 vs.
Match: Mitochondrial (energy transfer protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT2_ECTSI) HSP 1 Score: 81.3 bits (199), Expect = 7.090e-17 Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 1
Query: 76 MQGRGTSSQLSHLSLKLLRRGAGAQFVMSLPHGAFNYATLEV 201
MQGRGTS+QLS LSLKLLRRGAGAQF+MSLPHGAFNYATLEV
Sbjct: 1 MQGRGTSAQLSSLSLKLLRRGAGAQFIMSLPHGAFNYATLEV 42
BLAST of mRNA_H-canaliculatus_M_contigs8328.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7A1_HETAK) HSP 1 Score: 77.0 bits (188), Expect = 5.800e-15 Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 1
Query: 4 LMAGAVSRSIAHTCVHPAIVVKTLMQGRGTSSQLSHLSLKLLRRGAGAQFVMSLPHGAFNYATLE 198
++AGAVSRS+A T + P V+KTL Q GT+ QL +S KLL RGAGAQF++S+PHGA +A +E
Sbjct: 91 MIAGAVSRSVAQTMMQPFNVMKTLKQAHGTADQLKQMSFKLLTRGAGAQFLLSMPHGAIAFAVVE 155
BLAST of mRNA_H-canaliculatus_M_contigs8328.1.1 vs.
Match: S-adenosylmethionine (mitochondrial carrier protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7THW6_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 1.280e-14 Identity = 38/65 (58.46%), Postives = 53/65 (81.54%), Query Frame = 1
Query: 4 LMAGAVSRSIAHTCVHPAIVVKTLMQGRGTSSQLSHLSLKLLRRGAGAQFVMSLPHGAFNYATLE 198
++AGAVSRS A T +HPA VVKTL+Q +G + +L++L++++L RGAGAQF +SLPHGA +A LE
Sbjct: 226 MLAGAVSRSCAQTAMHPANVVKTLLQTKG-AGELANLNVQILTRGAGAQFALSLPHGALAFAVLE 289
BLAST of mRNA_H-canaliculatus_M_contigs8328.1.1 vs.
Match: Mitochondrial (carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC4_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 1.180e-11 Identity = 33/65 (50.77%), Postives = 50/65 (76.92%), Query Frame = 1
Query: 4 LMAGAVSRSIAHTCVHPAIVVKTLMQGRGTSSQLSHLSLKLLRRGAGAQFVMSLPHGAFNYATLE 198
++AGA+SRS+A +HP V+KTL+Q +G+ + + L++ L RGAGAQF++S+P GAF+YA LE
Sbjct: 107 MVAGALSRSVAQVALHPFNVLKTLLQTKGSFAAVLPLTVADLTRGAGAQFLLSVPTGAFHYAVLE 171
BLAST of mRNA_H-canaliculatus_M_contigs8328.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EE76_TRICV) HSP 1 Score: 65.9 bits (159), Expect = 1.650e-11 Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 1
Query: 4 LMAGAVSRSIAHTCVHPAIVVKTLMQG------RGTSSQLSHLS-LKLLRRGAGAQFVMSLPHGAFNYATLE 198
++ GAVSRS+A T +HPA +KT++Q R T +QL S KLL RGAGAQ ++S+PHGA N+A LE
Sbjct: 63 MICGAVSRSVAQTVMHPANTMKTILQSNRGAEQRQTVAQLMRPSNFKLLSRGAGAQLLLSIPHGAVNFAVLE 134
BLAST of mRNA_H-canaliculatus_M_contigs8328.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U588_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 1.680e-11 Identity = 37/71 (52.11%), Postives = 49/71 (69.01%), Query Frame = 1
Query: 4 LMAGAVSRSIAHTCVHPAIVVKTLMQG-RGTSSQLSHL-----SLKLLRRGAGAQFVMSLPHGAFNYATLE 198
++ GAVSRS+A T +HPA +KT++Q R Q + +LKLL RGAGAQF+MS+PHGA N+A LE
Sbjct: 191 MVCGAVSRSLAQTMMHPANTMKTILQSNRSIEKQTLGMLAKPENLKLLSRGAGAQFLMSVPHGAINFAVLE 261 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8328.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs8328.1.1 >prot_H-canaliculatus_M_contigs8328.1.1 ID=prot_H-canaliculatus_M_contigs8328.1.1|Name=mRNA_H-canaliculatus_M_contigs8328.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=66bp MAGAVSRSIAHTCVHPAIVVKTLMQGRGTSSQLSHLSLKLLRRGAGAQFVback to top mRNA from alignment at H-canaliculatus_M_contigs8328:4577..4780+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs8328.1.1 ID=mRNA_H-canaliculatus_M_contigs8328.1.1|Name=mRNA_H-canaliculatus_M_contigs8328.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=204bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8328:4577..4780+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8328:4577..4780+ >mRNA_H-canaliculatus_M_contigs8328.1.1 ID=mRNA_H-canaliculatus_M_contigs8328.1.1|Name=mRNA_H-canaliculatus_M_contigs8328.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=198bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8328:4577..4780+ (Hapterophycus canaliculatus Oshoro7m male)back to top |