mRNA_H-canaliculatus_M_contigs8325.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8325.1.1 vs.
Match: Leucine (rich repeat carbohydrate binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL48_ECTSI) HSP 1 Score: 369 bits (948), Expect = 1.170e-121 Identity = 196/312 (62.82%), Postives = 233/312 (74.68%), Query Frame = 1
Query: 16 RMVAAFAAVASALXXXXXXXXXXXXXXXXXTVDAPVYDTRSSAPYGCPPAGCVGANTRDGMVSGELRWSCANSLDSS-AACTITYTLEDAQELQALQIALYKGDTRTRTMDILVDDELVLTWTSAGISAGFEFVELGVQGQVIELRGVLTDSEWLSISEVEILVD----GADVDLIEAGALETVTATAEFYDTRLGDSIGCDPEGCTAELTRDGDMFEGSRWSCSPSLGGTCSISYDLGAVRDIYYLHLAMYKGAERVRTMEIYVDGNLVTTYSTSGTTNFFGVVYLSGMTGQVVTIEGV-LADSEWLSIVE 933
R AAFAA +A T +APV+D R++ PYGCPPAGCVGANTRDG+ S E RWSCA SLDSS + CTITYTLED Q L+AL+IALY+GDTRTRT+DI VD +WTS+G ++ FE ++LGV G+V+EL G L D EWLSI EVEILVD G++VD++EAG L TVTATA+ YD RLGD++GCDPEGCTA LTRDGDM E SRWSC+P LGG CSISYDLGA I L LAMY+G RVRT+ + VDG+LVTT+++SGTT+ F V +SG TGQVVTI G L+DSEWLSIVE
Sbjct: 5 RSWAAFAAAVAAGACVVDAAIVDAGTLTGVTTEAPVFDDRATLPYGCPPAGCVGANTRDGITSDESRWSCAPSLDSSDSGCTITYTLEDEQHLEALKIALYQGDTRTRTIDISVDGNYAFSWTSSGTTSDFESIDLGVDGKVVELVGDLQDWEWLSILEVEILVDDGDDGSEVDVVEAGELGTVTATADLYDDRLGDTVGCDPEGCTAALTRDGDMSEDSRWSCAPELGGLCSISYDLGAEYSIDELQLAMYQGDTRVRTVGVAVDGDLVTTWTSSGTTSGFESVDMSGATGQVVTITGAELSDSEWLSIVE 316
BLAST of mRNA_H-canaliculatus_M_contigs8325.1.1 vs.
Match: F5/8 (type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1V3_9PHAE) HSP 1 Score: 334 bits (857), Expect = 6.860e-108 Identity = 176/286 (61.54%), Postives = 211/286 (73.78%), Query Frame = 1
Query: 106 TVDAPVYDTRSSAPYGCPPAGCVGANTRDGMVSGELRWSCANSLDSSAA-CTITYTLEDAQELQALQIALYKGDTRTRTMDILVDDELVLTWTSAGISAGFEFVELGVQGQVIELRGVLTDSEWLSISEVEILVDGADVD--------LIEAGALETVTATAEFYDTRLGDSIGCDPEGCTAELTRDGDMFEGSRWSCSPSLGGTCSISYDLGAVRDIYYLHLAMYKGAERVRTMEIYVDGNLVTTYSTSGTTNFFGVVYLSGMTGQVVTIEGV-LADSEWLSIVE 933
T +A V+DTRS+ PYGCPP GCV ANTRDG +S E RWSC SLD+S + C+IT+TLE + L ++IALYKGDTRTRT+D+ VD + TWTS+G + GFE V L QGQV+EL G L D EWLSI EVEI VD VD ++EA + TVTATA+ YDTRLGD++GCDPEGCTA LTRDGDM EGSRWSC+P LGG CSISYDLGA ++ L L MY+G R RT+++ VDG LVTT+++SGTT F V LSG GQVVTI G ADS+WLSI+E
Sbjct: 34 TPEASVFDTRSTLPYGCPPDGCVAANTRDGDMSDESRWSCRPSLDASGSGCSITFTLEKVEYLGDIRIALYKGDTRTRTIDMYVDGRHITTWTSSGTTTGFESVLLMDQGQVVELVGDLNDDEWLSILEVEIDVDDGIVDDDTVVVLDVVEAAEMGTVTATADLYDTRLGDTVGCDPEGCTAALTRDGDMSEGSRWSCAPKLGGPCSISYDLGAEYNVEQLRLRMYRGDSRTRTVDVSVDGALVTTWTSSGTTTEFESVDLSGAYGQVVTISGSNQADSQWLSIIE 319
BLAST of mRNA_H-canaliculatus_M_contigs8325.1.1 vs.
Match: F5/8 (type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE) HSP 1 Score: 306 bits (783), Expect = 5.250e-92 Identity = 164/287 (57.14%), Postives = 203/287 (70.73%), Query Frame = 1
Query: 106 TVDAPVYDTRSSAPYG-CPPAGCVGANTRDG-MVSGELRWSCANSL-DSSAACTITYTLEDAQELQALQIALYKGDTRTRTMDILVDDELVLTWTSAGISAGFEFVELGVQGQVIELRGVLTDSEWLSISEVEILVDGADVDL--------IEAGALETVTATAEFYDTRLGDSIGCDPEGCTAELTRDGDMFEGSRWSCSPSLGGTCSISYDLGAVRDIYYLHLAMYKGAERVRTMEIYVDGNLVTTYSTSGTTNFFGVVYLSGMTGQVVTIEGVLADSEWLSIVE 933
TV AP+YDT +A G C P GC+G NTRDG S E RWSC +L D+ + C ITY L +L L IA+YKGD RTRT++I +D+ WTS+G + FE +E+ G+ I++ GVL DSEWLSI EVEILVD D +EAG+L VTAT+ +D RLGDS GCDP GCTAELTRDGD+ +GSRWSC+PSLGGTCSISYDLGAV D+ L LA+YKG RVRT+++ VDG+L TT+++SGTT+ F V LSG +GQ VT+ GVL DSEW+SI E
Sbjct: 35 TVAAPLYDTTVTASDGGCSPTGCIGDNTRDGDATSVESRWSCKPALGDAGSVCRITYGLGIQYQLTGLNIAMYKGDERTRTLEINIDNLPYTVWTSSGTTTDFETIEVDTMGRWIDIVGVLEDSEWLSIMEVEILVDDGVTDTDDVAGTTEVEAGSLGIVTATSALFDPRLGDSNGCDPAGCTAELTRDGDVSDGSRWSCAPSLGGTCSISYDLGAVYDLSELRLALYKGTTRVRTVDVTVDGSLATTWTSSGTTDGFENVDLSGYSGQDVTVTGVLDDSEWVSITE 321
BLAST of mRNA_H-canaliculatus_M_contigs8325.1.1 vs.
Match: F5/8 (type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE) HSP 1 Score: 297 bits (761), Expect = 7.510e-89 Identity = 160/286 (55.94%), Postives = 200/286 (69.93%), Query Frame = 1
Query: 106 TVDAPVYDTRSSAPYGCPPAGCVGANTRDG-MVSGELRWSCANSL-DSSAACTITYTLEDAQELQALQIALYKGDTRTRTMDILVDDELVLTWTSAGISAGFEFVELGVQGQVIELRGVLTDSEWLSISEVEILVDGADVDL--------IEAGALETVTATAEFYDTRLGDSIGCDPEGCTAELTRDGDMFEGSRWSCSPSLGGTCSISYDLGAVRDIYYLHLAMYKGAERVRTMEIYVDGNLVTTYSTSGTTNFFGVVYLSGMTGQVVTIEGVLADSEWLSIVE 933
T A +YD R SA GC P+GCV TRDG S E RWSC +L D+ + C ITY L +L L IA++KGD RTRT++I +D+ WTS+G +AGFE +E+ G+ IE+ GVL DSEWLSI EVEILVD D +EAG+L VTAT+ +D RLGDS GCDP GCTAELTRDGD+ + SRWSC+PSLGGTCSISYDLGAV D+ L LA+Y GA RVRT+++ VDG+L TT+++SGTT+ F + LSG +GQ +T+ GVL + EWLSI E
Sbjct: 34 TAVADLYDPRLSADNGCDPSGCVAELTRDGDATSLESRWSCQPALGDAGSVCRITYGLGIQYQLTGLNIAMFKGDERTRTLEINIDNLPYTVWTSSGTTAGFETIEVDTTGRWIEIVGVLEDSEWLSIMEVEILVDDGVTDTDDVVDTTEVEAGSLGIVTATSALFDPRLGDSNGCDPAGCTAELTRDGDVSDESRWSCAPSLGGTCSISYDLGAVYDLSKLRLALYNGATRVRTVDVSVDGSLATTWTSSGTTDGFENIDLSGYSGQDITVTGVLDNLEWLSIKE 319
BLAST of mRNA_H-canaliculatus_M_contigs8325.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE) HSP 1 Score: 274 bits (700), Expect = 3.780e-81 Identity = 150/289 (51.90%), Postives = 191/289 (66.09%), Query Frame = 1
Query: 106 TVDAPVYDTRSSAPYGCPPAGCVGANTRDG-MVSGELRWSCANSL-DSSAACTITYTLEDAQELQALQIALYKGDTRTRTMDILVDDELVLTWTSAGISAGFEFVELGVQGQVIELRGVLTDSEWLSISEVEILVD----GADVDL-------IEAGALETVTATAEFYDTRLGDSIGCDPEGCTAELTRDGDMFEGSRWSCSPSLGGTCSISYDLGAVRDIYYLHLAMYKGAERVRTMEIYVDGNLVTTYSTSGTTNFFGVVYLSGMTGQVVTIEGVLADSEWLSIVE 933
T A +YD R SA GC P+GCV TRDG S E RW+C +L D+ + C ITY L +L +L IA+YKGD RTRT++I +D+ TWTS+G + GFE +EL G+ I + GVL DSEWLSI EV+I++D G+D D +EA L +VTA A FYD RL GCDP GC + TRDGD+ SRWSC+P+LGG C+ISYDLG D+ L LAM+KG ER +M++ VD LVTT+++SGTT+ F + LSG GQV+ I GVL DSEWLSI+E
Sbjct: 17 TAVAELYDPRLSAESGCDPSGCVAELTRDGDATSLESRWACKPALGDAGSECRITYGLGIQYQLSSLNIAMYKGDERTRTLEISIDNLPYTTWTSSGTTTGFETIELDTMGRWISIVGVLADSEWLSIMEVKIMIDDGETGSDDDNTTTNASGVEASTLGSVTAGASFYDPRLAVDGGCDPSGCVVDNTRDGDLSTASRWSCAPTLGGECTISYDLGTAYDLDELRLAMFKGTERQVSMKVRVDDALVTTWTSSGTTDGFEAIDLSGTWGQVLEITGVLDDSEWLSIIE 305
BLAST of mRNA_H-canaliculatus_M_contigs8325.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI) HSP 1 Score: 272 bits (696), Expect = 9.340e-80 Identity = 146/288 (50.69%), Postives = 183/288 (63.54%), Query Frame = 1
Query: 106 TVDAPVYDTRSSAPYGCPPAGCVGANTRDGMVSGELRWSCANSLDSSAACTITYTLEDAQELQALQIALYKGDTRTRTMDILVDDELVLTWTSAGISAGFEFVEL-GVQGQVIELRGVLTDSEWLSISEVEILVDGAD-----------VDLIEAGALETVTATAEFYDTRLGDSIGCDPEGCTAELTRDGDMFEGSRWSCSPSLGGTCSISYDLGAVRDIYYLHLAMYKGAERVRTMEIYVDGNLVTTYSTSGTTNFFGVVYLSGMTGQVVTIEGVLADSEWLSIVE 933
TV+A YD + GC P+GCV NTRDG +S RWSCA +L CTI+Y L EL L++A+YKG R TM++ VDD LV TWTS+G + E ++L G GQ +E+ GVL DSEWLSI EVEI+V+ D +EA L +VT A YD L GCDP GC A+ TRDGD+ SRWSC+P LGG CSISYDLG D+ + LAM+KG ER TME+ VD LV T+++SGTT+ F + +SG +GQV+ I GVL DSEWLSI+E
Sbjct: 207 TVEASFYDPSLTVDGGCDPSGCVADNTRDGDLSTASRWSCAPTL--GGECTISYDLGTVYELDELRLAMYKGTERQVTMEVRVDDTLVTTWTSSGTTDDLEAIDLSGTSGQTVEITGVLDDSEWLSIVEVEIMVEDGDQGSGDDDTTTNTSAVEASTLGSVTVGASLYDPSLAVDGGCDPSGCVADNTRDGDLSAASRWSCAPKLGGECSISYDLGTAYDLDEVRLAMFKGTERQVTMEVRVDDALVITWTSSGTTDGFEAIDMSGTSGQVLEITGVLDDSEWLSIIE 492
BLAST of mRNA_H-canaliculatus_M_contigs8325.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ4_ECTSI) HSP 1 Score: 176 bits (446), Expect = 8.260e-46 Identity = 130/383 (33.94%), Postives = 166/383 (43.34%), Query Frame = 1
Query: 112 DAPVYDTRSSAPYGCPPAGCVGANTRDGMVSGELRWSCANSLDSSAACTITYTLEDAQELQALQIALYKGDTRTRTMDILVDDELVLTWTSAGISAGFEFVELGVQGQVIELRGVLTDSEWLSISEVEILV-DGA-DVD------------------------------------------------------------------------------------------------------LIEAGALET-VTATAEFYDTRLGDSIGCDPEGCTAELTRDGDMFEGSRWSCSPSLGG---TCSISYDLGAVRDIYYLHLAMYKGAERVRTMEIYVDGNLVTTYSTSGTTNFF-GVVYLSGMTGQVVTIEGVLADSEWLSIVE 933
+A ++D+R + GC PAGC G TR GDTRTRTMD+ VD L +WTS+G + FE V LGV GQ +ELRGVL DSEWLSI+EV+ LV DGA D D E G +T VT TA+ +D L GCDP GCTA LTRDGD + SRWSC+ +LGG CSISYDLG + L +A+Y G RVRT+++ VDG LV T+++SGTT+ F + + G++G V+ ++GVL DSEWLSI+E
Sbjct: 43 EASLFDSRLAVAGGCDPAGCSGDKTR-------------------------------------------GDTRTRTMDVYVDQALQTSWTSSGTTNEFETVVLGVTGQTVELRGVLADSEWLSITEVKALVEDGATDTDDSEFQIDFPSWATELPPLPNATWRLFLPRHNMSIMTSAHVRGSPTNTSSLPALPYIVQVKIMVLSGDGLAPPPSPPTTTPAPVFAPVATATPTVATPEQLWSAKEIGTQDTTVTTTADLFDPALAIDNGCDPAGCTAALTRDGDTGDASRWSCATNLGGEGAVCSISYDLGREFGLDELRVALYNGDIRVRTIDVSVDGVLVATWTSSGTTDGFESIAFPDGVSGTVINLQGVLDDSEWLSIIE 382
BLAST of mRNA_H-canaliculatus_M_contigs8325.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L7_ECTSI) HSP 1 Score: 128 bits (321), Expect = 5.880e-33 Identity = 66/115 (57.39%), Postives = 79/115 (68.70%), Query Frame = 1
Query: 460 TDSEWLSISEVEILVD----GADVDLIEAGALETVTATAEFYDTRLGDSIGCDPEGCTAELTRDGDMFEGSRWSCSPSLGGTCSISYDLGAVRDIYYLHLAMYKGAERVRTMEIY 792
T S+S VEILVD G++VD++EAG L TVTATA+ YD RLGD++GCDP+GCTA LTRDGDM E SRWSC+P LGG CSISYD GA I L L + RT ++
Sbjct: 16 TSKALTSVSMVEILVDDGDDGSEVDVVEAGELGTVTATADLYDDRLGDTVGCDPDGCTAALTRDGDMSEDSRWSCAPELGGLCSISYDRGAEYRIDELQLGDCGSRAQGRTENVH 130
BLAST of mRNA_H-canaliculatus_M_contigs8325.1.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRJ1_ECTSI) HSP 1 Score: 112 bits (280), Expect = 1.550e-24 Identity = 55/94 (58.51%), Postives = 70/94 (74.47%), Query Frame = 1
Query: 364 LVLTWTSAGISAGFEFVELGVQGQVIELRGVLTDSEWLSISEVEILVDGADVD---LIEAGALETVTATAEFYDTRLGDSIGCDPEGCTAELTR 636
+++ WTS+G +A FE +ELGVQG VI L GVL DS+WLSI EV ILVD + D ++EAG L V ++AEFYD RL D++GCDP GC+A LTR
Sbjct: 1 MIMEWTSSGETAAFETIELGVQGTVIGLHGVLADSDWLSILEVGILVDDGNDDGVAVVEAGELGPVASSAEFYDLRLADTVGCDPAGCSAALTR 94
BLAST of mRNA_H-canaliculatus_M_contigs8325.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G277_ECTSI) HSP 1 Score: 94.7 bits (234), Expect = 7.400e-18 Identity = 58/151 (38.41%), Postives = 80/151 (52.98%), Query Frame = 1
Query: 526 IEAGALETVTATAEFYDTRLGDSIGCDPEGCTAELTRDGDMFEGSRWSCSPSL--------GGTCSISYDLGAVRDIYYLHLAMYKGAERVRTMEIYVDGNLVTTYSTSGTTNFFGVVYLSGMTGQVVTIE------GVLADSEWLSIVEV 936
+EAG + TVT T +D R D GC P+GCT E TRDGD+ + SRWSCS L G C + ++LG + + + +A KG R RT+ I V+G L ++ GTT+ L G G + G+ AD E+LSI+EV
Sbjct: 248 VEAGEVTTVTVTTNAFDARTDDD-GCAPDGCTGENTRDGDLTDNSRWSCSAGLVEAAGGAAGEECQVMFELGEAQLVTSVSVAFLKGDTRTRTLNINVNGELFEVVTSGGTTSGLETFELDGGAGAPGVLSLGMESSGLTAD-EFLSIIEV 396 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8325.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs8325.1.1 >prot_H-canaliculatus_M_contigs8325.1.1 ID=prot_H-canaliculatus_M_contigs8325.1.1|Name=mRNA_H-canaliculatus_M_contigs8325.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=319bp MSPSRRMVAAFAAVASALVAAADATTVEAGTITTVTVDAPVYDTRSSAPYback to top mRNA from alignment at H-canaliculatus_M_contigs8325:235..4659+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs8325.1.1 ID=mRNA_H-canaliculatus_M_contigs8325.1.1|Name=mRNA_H-canaliculatus_M_contigs8325.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=4425bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8325:235..4659+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8325:235..4659+ >mRNA_H-canaliculatus_M_contigs8325.1.1 ID=mRNA_H-canaliculatus_M_contigs8325.1.1|Name=mRNA_H-canaliculatus_M_contigs8325.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=957bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8325:235..4659+ (Hapterophycus canaliculatus Oshoro7m male)back to top |