mRNA_H-canaliculatus_M_contigs8324.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8324.1.1 vs.
Match: Fe-S-cluster (oxidoreductase-like n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKL6_ECTSI) HSP 1 Score: 225 bits (574), Expect = 7.390e-72 Identity = 106/139 (76.26%), Postives = 118/139 (84.89%), Query Frame = 1
Query: 1 EYLPDPEEFDLYMSMAEDDGWCKHFDKENRACTIYNDRPRFCRVETETFGSMYGVEAEDMDDFCSACCNEQISDVYGAKRREREAGRRGERAKAKEMRAFNKALAALERGERPNPELNAFGGDLKGQGERQIRDWGLDE 417
EYLPDPEEFDLYMSM DGWCKHFDKE+RACT+Y+DRPRFCRVETETFGSMYGVE EDMDDFCS+CCNEQISDVYGA+ +KE+R FN+ALAALERGERP P+L+AFGGDL+GQGE QIRDWGL+E
Sbjct: 156 EYLPDPEEFDLYMSMTGSDGWCKHFDKESRACTVYSDRPRFCRVETETFGSMYGVEPEDMDDFCSSCCNEQISDVYGAE--------------SKELRVFNEALAALERGERPKPDLSAFGGDLRGQGEGQIRDWGLEE 280
BLAST of mRNA_H-canaliculatus_M_contigs8324.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3B2_9STRA) HSP 1 Score: 120 bits (300), Expect = 2.130e-31 Identity = 62/131 (47.33%), Postives = 77/131 (58.78%), Query Frame = 1
Query: 16 PEEFDLYMSMAEDDGWCKHFDKENRACTIYNDRPRFCRVETETFGSMYGVEAEDMDDFCSACCNEQISDVYGAKRREREAGRRGERAKAKEMRAFNKALAALERGERPNPELNAFGGDLKGQGERQIRDWG 408
PEE D Y SM GWCK+FD NRACTIY RP FC V ETF MYGV+ E+MD FC+ CC EQI+DVYG + + EM FN A++ L+RG+ P ++ F G GQ + Q+ WG
Sbjct: 54 PEELDQYKSMVLPSGWCKYFDPTNRACTIYETRPSFCTVSPETFADMYGVDGEEMDSFCTHCCREQITDVYGKR--------------SDEMHRFNAAISELKRGDELQP-VDPFSG---GQRDDQVFKWG 166
BLAST of mRNA_H-canaliculatus_M_contigs8324.1.1 vs.
Match: Fe-S (cluster protein n=3 Tax=Nostocales TaxID=1161 RepID=A0A139X7I9_9CYAN) HSP 1 Score: 108 bits (271), Expect = 4.310e-28 Identity = 47/77 (61.04%), Postives = 59/77 (76.62%), Query Frame = 1
Query: 1 EYLPDPEEFDLYMSMAEDDGWCKHFDKENRACTIYNDRPRFCRVETETFGSMYGVEAEDMDDFCSACCNEQISDVYG 231
EYL P+E +LY+SM DDGWC ++DKENR C IY +RPRFCRVETE F MYG+E E+++DF CC++QI VYG
Sbjct: 26 EYLS-PKELELYLSMVGDDGWCVNYDKENRECRIYPNRPRFCRVETEVFQDMYGIEPEELNDFAIDCCHQQIEGVYG 101
BLAST of mRNA_H-canaliculatus_M_contigs8324.1.1 vs.
Match: YkgJ (family cysteine cluster protein n=1 Tax=Sphaerospermopsis aphanizomenoides TaxID=459663 RepID=UPI0019087D7A) HSP 1 Score: 107 bits (267), Expect = 1.740e-27 Identity = 48/77 (62.34%), Postives = 56/77 (72.73%), Query Frame = 1
Query: 1 EYLPDPEEFDLYMSMAEDDGWCKHFDKENRACTIYNDRPRFCRVETETFGSMYGVEAEDMDDFCSACCNEQISDVYG 231
EYL PEE LY+SM +DGWC +FD E R CTIY DRPRFCRVE ETF MYG+E E+++DF CC +QI VYG
Sbjct: 26 EYLS-PEEMGLYLSMVGEDGWCVNFDHETRECTIYADRPRFCRVEAETFQDMYGIEPEELNDFAIDCCRQQIDCVYG 101
BLAST of mRNA_H-canaliculatus_M_contigs8324.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3R1_9STRA) HSP 1 Score: 110 bits (274), Expect = 2.370e-27 Identity = 52/105 (49.52%), Postives = 68/105 (64.76%), Query Frame = 1
Query: 13 DPEEFDLYMSMAEDDGWCKHFDKENRACTIYNDRPRFCRVETETFGSMYGVEAEDMDDFCSACCNEQISDVYGAKRREREAGRRGERAKAKEMRAFNKALAALER 327
DP+E Y SM +DGWC +FDK R CTIY+DRP FC+VE +F SMYG+ ++D+D+FC++CC E ISDVYG ++EMR FN AL +L R
Sbjct: 100 DPDERIQYESMVGNDGWCVYFDKITRLCTIYDDRPDFCKVEANSFQSMYGIHSDDLDNFCTSCCREHISDVYGLN--------------SQEMRRFNGALKSLRR 190
BLAST of mRNA_H-canaliculatus_M_contigs8324.1.1 vs.
Match: Fe-S-cluster (oxidoreductase-like n=2 Tax=Synechococcus elongatus TaxID=32046 RepID=Q31QP8_SYNE7) HSP 1 Score: 108 bits (270), Expect = 9.850e-27 Identity = 46/72 (63.89%), Postives = 55/72 (76.39%), Query Frame = 1
Query: 16 PEEFDLYMSMAEDDGWCKHFDKENRACTIYNDRPRFCRVETETFGSMYGVEAEDMDDFCSACCNEQISDVYG 231
PEE LY+SM DGWC HFD ++R C+IY+DRPRFCRV+ ETF SM+GV ED++DF ACC EQI VYG
Sbjct: 129 PEEMALYLSMVGSDGWCIHFDHDSRLCSIYDDRPRFCRVQPETFESMFGVPKEDLNDFAIACCEEQIEGVYG 200
BLAST of mRNA_H-canaliculatus_M_contigs8324.1.1 vs.
Match: Fe-S (cluster protein n=1 Tax=Mastigocoleus testarum BC008 TaxID=371196 RepID=A0A0V7ZIL1_9CYAN) HSP 1 Score: 105 bits (262), Expect = 1.360e-26 Identity = 46/77 (59.74%), Postives = 57/77 (74.03%), Query Frame = 1
Query: 1 EYLPDPEEFDLYMSMAEDDGWCKHFDKENRACTIYNDRPRFCRVETETFGSMYGVEAEDMDDFCSACCNEQISDVYG 231
EYL PEE +LY+SM + GWC ++D+E R C IY DRPRFCRVE E F MYG+EA+D++DF CCN+QI VYG
Sbjct: 26 EYLS-PEELELYLSMVGEGGWCINYDRELRECKIYPDRPRFCRVEAEVFVEMYGIEAQDLNDFAIECCNQQIEGVYG 101
BLAST of mRNA_H-canaliculatus_M_contigs8324.1.1 vs.
Match: Fe-S (cluster protein n=1 Tax=Aliterella atlantica CENA595 TaxID=1618023 RepID=A0A0D8ZWI4_9CYAN) HSP 1 Score: 105 bits (261), Expect = 1.770e-26 Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1
Query: 1 EYLPDPEEFDLYMSMAEDDGWCKHFDKENRACTIYNDRPRFCRVETETFGSMYGVEAEDMDDFCSACCNEQISDVYG 231
EYL PEE ++YMSM +DGWC ++D+ NR C IY DRPRFCRVE+E F MYG+E E+++DF CC EQI+ VYG
Sbjct: 26 EYLL-PEELEVYMSMVGEDGWCINYDRLNRECRIYADRPRFCRVESEIFQDMYGIEPEELNDFAIECCQEQITGVYG 101
BLAST of mRNA_H-canaliculatus_M_contigs8324.1.1 vs.
Match: YkgJ (family cysteine cluster protein n=2 Tax=Cyanobacteria TaxID=1117 RepID=UPI001686C0EB) HSP 1 Score: 105 bits (261), Expect = 1.770e-26 Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 1
Query: 16 PEEFDLYMSMAEDDGWCKHFDKENRACTIYNDRPRFCRVETETFGSMYGVEAEDMDDFCSACCNEQISDVYG 231
P E LY+SM DDGWC HFDK R C++YNDRPRFCRVE + F ++GVE +++DF ACC EQI VYG
Sbjct: 30 PTELALYLSMVGDDGWCVHFDKATRECSVYNDRPRFCRVEPDVFQDLFGVEPTELNDFAIACCQEQIEGVYG 101
BLAST of mRNA_H-canaliculatus_M_contigs8324.1.1 vs.
Match: YkgJ (family cysteine cluster protein n=1 Tax=filamentous cyanobacterium LEGE 11480 TaxID=2777977 RepID=UPI0019F4FAC6) HSP 1 Score: 104 bits (260), Expect = 2.000e-26 Identity = 46/77 (59.74%), Postives = 55/77 (71.43%), Query Frame = 1
Query: 1 EYLPDPEEFDLYMSMAEDDGWCKHFDKENRACTIYNDRPRFCRVETETFGSMYGVEAEDMDDFCSACCNEQISDVYG 231
EYL PE+ D+YMSM +DGWC + D+E R CTIY RP FCRV ETF SM+G+ A D++DF CC EQI DVYG
Sbjct: 26 EYLS-PEQIDIYMSMVGEDGWCINLDRETRECTIYEKRPSFCRVTAETFHSMFGITAADLNDFAIDCCREQIEDVYG 101 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8324.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs8324.1.1 >prot_H-canaliculatus_M_contigs8324.1.1 ID=prot_H-canaliculatus_M_contigs8324.1.1|Name=mRNA_H-canaliculatus_M_contigs8324.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=139bp EYLPDPEEFDLYMSMAEDDGWCKHFDKENRACTIYNDRPRFCRVETETFGback to top mRNA from alignment at H-canaliculatus_M_contigs8324:221..1426+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs8324.1.1 ID=mRNA_H-canaliculatus_M_contigs8324.1.1|Name=mRNA_H-canaliculatus_M_contigs8324.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1206bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8324:221..1426+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8324:221..1426+ >mRNA_H-canaliculatus_M_contigs8324.1.1 ID=mRNA_H-canaliculatus_M_contigs8324.1.1|Name=mRNA_H-canaliculatus_M_contigs8324.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=417bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8324:221..1426+ (Hapterophycus canaliculatus Oshoro7m male)back to top |