mRNA_H-canaliculatus_M_contigs8322.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8322.2.1
Unique NamemRNA_H-canaliculatus_M_contigs8322.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8322.2.1 vs.
Match: Aa_trans (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJZ0_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 7.520e-46
Identity = 84/103 (81.55%), Postives = 91/103 (88.35%), Query Frame = 1
Query:    1 MQDPTETQRKVGTTLLLAMFTAIGVLLTDLGFVVSFGGAVLGSALVFIFPTMMWISKCKKDVKWGKPLK----AEVMANYVIAGLGVSLAVLGGGLSIKKSFF 297
            + +PTE QRKVGTTLLL  FTAIGVLLTDLGFVVSFGGAVLGSALVFIFPTMMWI++ KKD KWGKPLK    AE+M NYVI+ LGV+LAVLGGGLSIKKSFF
Sbjct:  376 ISNPTENQRKVGTTLLLGFFTAIGVLLTDLGFVVSFGGAVLGSALVFIFPTMMWIAQSKKDAKWGKPLKGWRRAEIMGNYVISALGVALAVLGGGLSIKKSFF 478          
BLAST of mRNA_H-canaliculatus_M_contigs8322.2.1 vs.
Match: Hypothetical (protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2IT91_9EUKA)

HSP 1 Score: 74.3 bits (181), Expect = 2.090e-13
Identity = 42/101 (41.58%), Postives = 66/101 (65.35%), Query Frame = 1
Query:    4 QDPTETQRKVGTTL-LLAMFTAIGVLLTDLGFVVSFGGAVLGSALVFIFPTMMWISKCKKDVKWGKPL----KAEVMANYVIAGLGVSLAVLGGGLSIKKS 291
            Q   +T   VG++L LL     + + L DLG VV+FGGA+LGS+LV+IFP +M+I+  ++ +  GKP+    + E+ ANY +  LG +LA +GG +S+K +
Sbjct:  374 QHAAKTSVHVGSSLILLCAMNGLALKLKDLGLVVAFGGALLGSSLVYIFPALMFIAATRQQMAKGKPISRARRYEMFANYGLVALGAALAGVGGYMSLKNA 474          
BLAST of mRNA_H-canaliculatus_M_contigs8322.2.1 vs.
Match: Aa_trans (domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTY7_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.900e-13
Identity = 41/101 (40.59%), Postives = 64/101 (63.37%), Query Frame = 1
Query:   10 PTETQRKVGTTLLLAMFTAIGVLLTDLGFVVSFGGAVLGSALVFIFPTMMWISKCKKDVKWGK-----PLKAEVMANYVIAGLGVSLAVLGGGLSIKKSFF 297
            P+   + V T +LLA+ + + V L D+GFVVS GGA+LGS +++IFP +++I    + V  G+      +K EV+ N  I  LGV LA++G  +S+ K+FF
Sbjct:  412 PSARTQTVTTLVLLAVVSTLAVFLRDVGFVVSLGGALLGSCIIYIFPAIIFIKTMAQKVAKGEVVETPAVKREVLLNKGITALGVLLAIIGATVSVLKAFF 512          
BLAST of mRNA_H-canaliculatus_M_contigs8322.2.1 vs.
Match: Transmembrane (amino acid transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMH1_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 4.990e-13
Identity = 33/65 (50.77%), Postives = 49/65 (75.38%), Query Frame = 1
Query:   10 PTETQRKVGTTLLLAMFTAIGVLLTDLGFVVSFGGAVLGSALVFIFPTMMWISKCKKDVKWGKPL 204
            PT+TQ +V T  +L+  T   ++L +LGFVV+FGGA+LGSA++++FP +MW+ KCK D+K G  L
Sbjct:  342 PTKTQIRVATVAILSALTGCAMVLRNLGFVVAFGGALLGSAIIYVFPAVMWVGKCKGDMKRGDKL 406          
BLAST of mRNA_H-canaliculatus_M_contigs8322.2.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LDT1_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.860e-12
Identity = 40/103 (38.83%), Postives = 65/103 (63.11%), Query Frame = 1
Query:    4 QDPTETQRKVGTTLLLAMFTAIGVLLTDLGFVVSFGGAVLGSALVFIFPTMMWISKCKK-----DVKWGKPLKAEVMANYVIAGLGVSLAVLGGGLSIKKSFF 297
            ++ +E+ R   T LLL+  T I ++L + GFVVS  GA+ GS++++IFP++M++   +K     ++K  K L+AE M N  + GLG  L  LG  +S+ +SFF
Sbjct:  371 ENVSESLRLNATKLLLSGVTCIALVLENSGFVVSLNGAITGSSIIYIFPSLMFLRSTQKRLLSGELKLSKSLRAERMLNKFMIGLGAVLGCLGASVSVLESFF 473          
BLAST of mRNA_H-canaliculatus_M_contigs8322.2.1 vs.
Match: Hypothetical (protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VTN1_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 6.050e-12
Identity = 36/95 (37.89%), Postives = 59/95 (62.11%), Query Frame = 1
Query:   28 KVGTTLLLAMFTAIGVLLTDLGFVVSFGGAVLGSALVFIFPTMMWISKCKKDVKWG-----KPLKAEVMANYVIAGLGVSLAVLGGGLSIKKSFF 297
            K  T LLL     + ++L + GF VSF GAV+GSA++++FP  M++    + ++ G     K ++AE MA+ VI GLG  + V+GG +++  +FF
Sbjct:  173 KTLTKLLLGSLAGLALVLKNAGFTVSFVGAVMGSAIIYVFPPYMYLKSTSRRIRSGALRLSKRVRAERMASRVIIGLGALMGVVGGSVTVMDAFF 267          
BLAST of mRNA_H-canaliculatus_M_contigs8322.2.1 vs.
Match: Hypothetical (protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CMK0_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 6.510e-12
Identity = 41/100 (41.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:   13 TETQRKVGTTLLLAMFTAIGVLLTDLGFVVSFGGAVLGSALVFIFPTMMWISKCKKDVKWG-----KPLKAEVMANYVIAGLGVSLAVLGGGLSIKKSFF 297
            T+  R   T  +LA  T   +LL D GFVVSF GA++GSA+++IFP++M++   K  V  G       +K E + N +I  LGV LA++GG +S+   FF
Sbjct:  390 TDKTRTSVTRAILAGVTIGALLLEDAGFVVSFNGALMGSAIIYIFPSLMYLQSMKNRVANGLMADSTGVKLEAIFNKLILSLGVILAIMGGTVSVLSEFF 489          
BLAST of mRNA_H-canaliculatus_M_contigs8322.2.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E4C9_9EUKA)

HSP 1 Score: 66.2 bits (160), Expect = 1.300e-11
Identity = 36/93 (38.71%), Postives = 58/93 (62.37%), Query Frame = 1
Query:   31 VGTTLLLAMFTAIGVLLTDLGFVVSFGGAVLGSALVFIFPTMMWISKCKKDVKWG--------KPLKAEVMANYVIAGLGVSLAVLGGGLSIK 285
            V T LLLA+   + +++ DLG + +F GA+ GSA+++IFP  M++         G        +  K+E++AN+++AGLGV LAV+GG +S K
Sbjct:   53 VSTVLLLAVMNGLALVVKDLGALAAFSGAIAGSAIIYIFPAAMFLKSAAVQRAKGTGAAPGAPRYKKSEILANWLMAGLGVLLAVVGGVVSAK 145          
BLAST of mRNA_H-canaliculatus_M_contigs8322.2.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EVY8_9EUKA)

HSP 1 Score: 68.6 bits (166), Expect = 1.410e-11
Identity = 41/90 (45.56%), Postives = 58/90 (64.44%), Query Frame = 1
Query:   28 KVGTTLLLAMFTAIGVLLTDLGFVVSFGGAVLGSALVFIFPTMMWISKCKKDVKWGKPL--KAEVMANYVIAGLGVSLAVLGGGLSIKKS 291
            +  T LLLA  + I + L DLG VV+FGGA+LGS LV+IFP +M++ K K D    + L  +AE   N  +A  GV LA +GG +++KK+
Sbjct:  206 RASTVLLLAAVSTISLFLKDLGLVVAFGGAILGSGLVYIFPALMFL-KHKHDANEPQTLATRAETGLNIGVALSGVMLAAVGGTMTLKKA 294          
BLAST of mRNA_H-canaliculatus_M_contigs8322.2.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EWJ3_9EUKA)

HSP 1 Score: 68.6 bits (166), Expect = 2.260e-11
Identity = 41/90 (45.56%), Postives = 58/90 (64.44%), Query Frame = 1
Query:   28 KVGTTLLLAMFTAIGVLLTDLGFVVSFGGAVLGSALVFIFPTMMWISKCKKDVKWGKPL--KAEVMANYVIAGLGVSLAVLGGGLSIKKS 291
            +  T LLLA  + I + L DLG VV+FGGA+LGS LV+IFP +M++ K K D    + L  +AE   N  +A  GV LA +GG +++KK+
Sbjct:  396 RASTVLLLAAVSTISLFLKDLGLVVAFGGAILGSGLVYIFPALMFL-KHKHDANEPQTLATRAETGLNIGVALSGVMLAAVGGTMTLKKA 484          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8322.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Aa_trans7.520e-4681.55domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Hypothetical2.090e-1341.58protein n=1 Tax=Haptolina brevifila TaxID=156173 R... [more]
Aa_trans2.900e-1340.59domain-containing protein n=3 Tax=Monodopsidaceae ... [more]
Transmembrane4.990e-1350.77amino acid transporter protein-domain-containing p... [more]
Hypothetical1.860e-1238.83protein n=1 Tax=Leptocylindrus danicus TaxID=16351... [more]
Hypothetical6.050e-1237.89protein n=2 Tax=Pseudictyota dubia TaxID=2749911 R... [more]
Hypothetical6.510e-1241.00protein n=1 Tax=Proboscia inermis TaxID=420281 Rep... [more]
Hypothetical1.300e-1138.71protein n=1 Tax=Phaeocystis antarctica TaxID=33657... [more]
Hypothetical1.410e-1145.56protein n=1 Tax=Phaeocystis antarctica TaxID=33657... [more]
Hypothetical2.260e-1145.56protein n=1 Tax=Phaeocystis antarctica TaxID=33657... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8322contigH-canaliculatus_M_contigs8322:444..1298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FJZ0
PFAMsAa_trans
Model size300
Max annot lvl2759|Eukaryota
KEGG koko:K13576,ko:K14997
KEGG TC2.A.18.6,2.A.18.6.2,2.A.18.6.3
KEGG Pathwayko04724,ko04727,ko04964,map04724,map04727,map04964
Hectar predicted targeting categorysignal anchor
Exons2
Evalue1.23e-46
EggNOG OGsCOG0814@1|root,KOG1305@2759|Eukaryota
Descriptionamino acid transmembrane transporter activity
Cds size300
COG categoryE
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854147.6731-CDS-H-canaliculatus_M_contigs8322:443..6501696854147.6731-CDS-H-canaliculatus_M_contigs8322:443..650Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8322 444..650 +
1696854147.6950245-CDS-H-canaliculatus_M_contigs8322:1205..12981696854147.6950245-CDS-H-canaliculatus_M_contigs8322:1205..1298Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8322 1206..1298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8322.2.1prot_H-canaliculatus_M_contigs8322.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8322 444..1298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8322.2.1

>prot_H-canaliculatus_M_contigs8322.2.1 ID=prot_H-canaliculatus_M_contigs8322.2.1|Name=mRNA_H-canaliculatus_M_contigs8322.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=100bp
MQDPTETQRKVGTTLLLAMFTAIGVLLTDLGFVVSFGGAVLGSALVFIFP
TMMWISKCKKDVKWGKPLKAEVMANYVIAGLGVSLAVLGGGLSIKKSFF*
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mRNA from alignment at H-canaliculatus_M_contigs8322:444..1298+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8322.2.1 ID=mRNA_H-canaliculatus_M_contigs8322.2.1|Name=mRNA_H-canaliculatus_M_contigs8322.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=855bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8322:444..1298+ (Hapterophycus canaliculatus Oshoro7m male)
ATGCAGGACCCCACGGAGACTCAGCGGAAGGTCGGGACAACGCTGCTGCT GGCCATGTTCACGGCGATTGGGGTGCTGTTGACCGACTTGGGGTTCGTCG TGAGCTTCGGCGGAGCGGTGCTTGGCTCCGCCCTCGTCTTCATCTTCCCC ACCATGATGTGGATTTCTAAGTGCAAGAAGGACGTGAAGTGGGGGAAGCC GCTCAAGGTGTGTAGGTTGTATGGGTTGGGCTATTTTCGAGGGATGAGGA AAGGTGTCTGGTCCATCGCTTACGTGGTGCAAGCTGGATTTACGAAGAAC AAAGAGCCGCCCTAAGAGCGTGTGTCAGCTCGGGAGTTCGTTGTAGACGA TTCCTGACTGCTTCCACGAGTGAAAGAGGGTGCGGAAGGGCAGGGCATCT GAGGGCTGGCTGCGCAGCGTGGCAAGTGTGTTCGTTGATGGTCGACGTCG TTGCGGTGTGGCCGCGATGCCCTACCGCCGACTTCTCACCGACCATTCGC CGGTTCGAACGGCGTCCCCGCAGTTGGCTACAGAGGGCCCCGGGATCGGG CGCACGGTACATTTTCGAGGCCGCCTGTTGCAACACACCAGCGTCGAGAT ATTCCGGTCTGCGCACGAGACGGCTGTTCATTTCCTTGCATATGCTCCTG CCCTGCCAAAACGCATGCGTAGCTTTTCGATAAGGAGCAGGTGGGCTTAT TCCCTCCCCCCTTCGCGCGCTGCGTTATTGTTGGCGTGCGCTGCTCACAG GGGTGGCGCCAGGCAGAAGTCATGGCGAACTACGTCATCGCGGGATTGGG CGTTTCGCTCGCGGTCTTGGGCGGAGGCCTCAGCATCAAGAAGTCCTTCT TCTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8322:444..1298+

>mRNA_H-canaliculatus_M_contigs8322.2.1 ID=mRNA_H-canaliculatus_M_contigs8322.2.1|Name=mRNA_H-canaliculatus_M_contigs8322.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=300bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8322:444..1298+ (Hapterophycus canaliculatus Oshoro7m male)
ATGCAGGACCCCACGGAGACTCAGCGGAAGGTCGGGACAACGCTGCTGCT
GGCCATGTTCACGGCGATTGGGGTGCTGTTGACCGACTTGGGGTTCGTCG
TGAGCTTCGGCGGAGCGGTGCTTGGCTCCGCCCTCGTCTTCATCTTCCCC
ACCATGATGTGGATTTCTAAGTGCAAGAAGGACGTGAAGTGGGGGAAGCC
GCTCAAGGCAGAAGTCATGGCGAACTACGTCATCGCGGGATTGGGCGTTT
CGCTCGCGGTCTTGGGCGGAGGCCTCAGCATCAAGAAGTCCTTCTTCTAA
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