mRNA_H-canaliculatus_M_contigs8312.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8312.2.1
Unique NamemRNA_H-canaliculatus_M_contigs8312.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs8312.2.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW07_ECTSI)

HSP 1 Score: 342 bits (876), Expect = 6.340e-108
Identity = 234/454 (51.54%), Postives = 263/454 (57.93%), Query Frame = 1 
Query:   10 GGIVEVGAGLGYWKWVLEHGGEFSGSRSSSGCRGGGRGIXXXXXXGGSRDRCLDSAGIDNRMPSVVDGGXXXXXPSGLGSKGTAPLSFLAIDKDPSRLPASGG----------------SRNPGPVIESGRNQGGPAREKKRGGRXXXXXXXXQQRGAGRPEGPAGPTHNEYHGGAPAWAAVEKGGPERLRALSAAAYPVLLLCYPPPSVGGGSGGATAGPNGCMGADVLDHFSGRVLLYVGEVGGDTGSPRLEAALRAGWDLVEEVDLPCFPSTANRLMVFNRKEAAATLSSSGRPPLPLPPGGAPTAAPGAAKQKHGTDAATPRSGTPAGTTRPPGAGVPALQESSGFGSGGGDGGRRGGAMAMYRCSGCGAAAAPSAATGDGARGVRLHRCRLTRAVSYCSEKCLAIDGERWRANLEARHIWLSVGSAVRVALQGGEYGAVFRDRKLFKRL 1323
            GGIVEVGAGLGYWKWVLE  G F            GRG XXXXXX         S G+   +      G      SG  +K   PL FLAIDKDPSR+P   G                          GR +GG  R ++ G R         +R          PTHNEYHGGAPAWA VE+GGPE+LRALSAAAYPVLLLCYPPPSVG G+G +     GCMGAD L  FSG+VLLY+GEVGGDTGSPR EAALRAGWDLVEEV+LPCF STANRLMVF RK A     SSG        GG   +  G+ K++    AA  R  TP     P              G  GG     G  MAMYRCSGCGA AA          GV LHRCRLTR+VS+CSEKCL +D ERWRANLEARH+ L+ G+AV +A Q G++G VFRD+KLFKRL
Sbjct:  259 GGIVEVGAGLGYWKWVLEGLGPFPN----------GRGXXXXXXX-----XXXTSRGVSLHL------GKAGRTLSGGDAKEAPPLKFLAIDKDPSRVPGGTGVSAASXXXXXXXXXXXXXXXXXXXXXGR-RGGNKRTRREGSRGGRHGEGQSER----------PTHNEYHGGAPAWAVVEQGGPEQLRALSAAAYPVLLLCYPPPSVGVGTGAS-----GCMGADALARFSGKVLLYIGEVGGDTGSPRFEAALRAGWDLVEEVELPCFSSTANRLMVFARKGAF----SSG--------GGVSASTAGSGKKRKDAGAAAARLDTPGKDACP-------------TGDAGGXXXXXG--MAMYRCSGCGAKAAAEG-------GVLLHRCRLTRSVSFCSEKCLTLDAERWRANLEARHVHLAPGTAVELANQSGKFGGVFRDKKLFKRL 641
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BLAST of mRNA_H-canaliculatus_M_contigs8312.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJJ1_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 4.620e-13
Identity = 100/340 (29.41%), Postives = 112/340 (32.94%), Query Frame = 1 
Query:  472 EYHGGAPAWAAVEKGGPERLRALSAAAYPV----LLLCYPPPSVGGG---SGGATA----GPNG--------------------------------------------CMGADVLDHFSGRVLLYVGEVGGDTGSPRLEAALRAGW-DLVEEVDLPCFPSTANRLMVFNRKEAAATLSSSGRPPLPLPPGGAPTAAPGAAKQKHGTDAATPRSGTPAGTTRPPGAGVPALQESSGFGSGGGDGGRRGGAMAMYRCSGCGAAAAPSAATGDGARGVRLHRCRLTRAVSYCSEKCLAIDGERWRANLEARHIWLSVGSAVRVALQGGEYGAVFRDRKLFKRL 1323
            EYHG APAW+AVE+GG ER               L LCYPPP    G    GG  A    G  G                                               AD L  F+G  ++Y GE GGDTG+P LEAAL A W      V+LP FP+TA  LMVF R                                              AG  R   A   A                         C+ C        ATG G     L RCR TRA  YCSE C   D  R +     RH+    G AV     GG  GA F D+K F  L
Sbjct:  446 EYHGRAPAWSAVERGGTERAXXXXXXXXXXXXXXLFLCYPPPEGTMGIAPHGGCCAYRDRGAGGKRFLSTVXXXXXXXXXXXXXXXXXXXAIVKSPTPPRSHPVRAPTTQTADALRAFAGDTVIYAGERGGDTGTPALEAALSAAWAPAAPPVELPAFPNTAACLMVFRRXXXXXXXXXXXXXXXXX-----------------------------AGVVRAFAAAPAAXXXXXXXXX-----------XXXXSCAVC-------KATGQG-----LRRCRRTRAACYCSEACRKTDETRLQVLQLVRHVRAPAGVAV-----GGSGGAPFNDKKRFAPL 728
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BLAST of mRNA_H-canaliculatus_M_contigs8312.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTB5_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 4.110e-8
Identity = 45/117 (38.46%), Postives = 60/117 (51.28%), Query Frame = 1 
Query:  469 NEYHGGAPAWAAVEKGGPERLRALSA-AAYPVLLLCYPPPSVGGGSGGATAGPNGCMGADVLDHFSGRVLLYVGEVGGDTGSPRLEAALRAGWDLVEEVDLPCFPSTANRLMVFNRK 816
            N YHG AP + A+ KGGPE L       A   LLLCYPP             P+  M  + +  F G  +++VGE  GDTG  R E  L+  + LV E+ LP + ++A  L V+ RK
Sbjct:  558 NAYHGQAPPFCAIGKGGPEVLAQTGGDMAARNLLLCYPP-------------PHDDMALNCVRLFQGEFIVHVGEWQGDTGDRRFEKELQLRFALVRELTLPNWGNSAYHLSVWRRK 661
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8312.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized6.340e-10851.54protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW07... [more]
Uncharacterized4.620e-1329.41protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized4.110e-838.46protein n=1 Tax=Pythium brassicum TaxID=1485010 Re... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8312contigH-canaliculatus_M_contigs8312:3692..5029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FW07
PFAMszf-MYND
Model size1338
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.46e-109
EggNOG OGs29H2K@1|root,2RQ99@2759|Eukaryota
Cds size1332
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854147.0151052-CDS-H-canaliculatus_M_contigs8312:3691..50231696854147.0151052-CDS-H-canaliculatus_M_contigs8312:3691..5023Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8312 3692..5023 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854147.0297968-UTR-H-canaliculatus_M_contigs8312:5023..50291696854147.0297968-UTR-H-canaliculatus_M_contigs8312:5023..5029Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8312 5024..5029 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8312.2.1prot_H-canaliculatus_M_contigs8312.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8312 3692..5023 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8312.2.1

>prot_H-canaliculatus_M_contigs8312.2.1 ID=prot_H-canaliculatus_M_contigs8312.2.1|Name=mRNA_H-canaliculatus_M_contigs8312.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=444bp
MGGIVEVGAGLGYWKWVLEHGGEFSGSRSSSGCRGGGRGIGGAGSGGGSR
DRCLDSAGIDNRMPSVVDGGGGGGGPSGLGSKGTAPLSFLAIDKDPSRLP
ASGGSRNPGPVIESGRNQGGPAREKKRGGRKGGRRGGGQQRGAGRPEGPA
GPTHNEYHGGAPAWAAVEKGGPERLRALSAAAYPVLLLCYPPPSVGGGSG
GATAGPNGCMGADVLDHFSGRVLLYVGEVGGDTGSPRLEAALRAGWDLVE
EVDLPCFPSTANRLMVFNRKEAAATLSSSGRPPLPLPPGGAPTAAPGAAK
QKHGTDAATPRSGTPAGTTRPPGAGVPALQESSGFGSGGGDGGRRGGAMA
MYRCSGCGAAAAPSAATGDGARGVRLHRCRLTRAVSYCSEKCLAIDGERW
RANLEARHIWLSVGSAVRVALQGGEYGAVFRDRKLFKRLPPPG*
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mRNA from alignment at H-canaliculatus_M_contigs8312:3692..5029-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8312.2.1 ID=mRNA_H-canaliculatus_M_contigs8312.2.1|Name=mRNA_H-canaliculatus_M_contigs8312.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1338bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8312:3692..5029- (Hapterophycus canaliculatus Oshoro7m male)
GGCGCGATGGGAGGCATCGTTGAGGTTGGTGCTGGCCTAGGATATTGGAA
GTGGGTCCTGGAGCATGGCGGAGAGTTCTCCGGCAGCAGAAGCAGCAGCG
GCTGCCGTGGTGGTGGTCGCGGTATTGGTGGGGCAGGCAGCGGCGGCGGT
AGCCGGGATAGGTGTCTGGATAGCGCTGGAATCGACAACAGAATGCCCAG
CGTGGTCGATGGTGGTGGTGGTGGTGGTGGTCCTAGTGGTCTTGGCTCGA
AGGGAACCGCCCCGCTGAGCTTCCTGGCCATCGACAAAGATCCCTCGCGC
CTTCCAGCCTCCGGTGGCTCGAGAAACCCCGGCCCCGTCATCGAGTCCGG
GCGAAATCAGGGAGGACCGGCGAGAGAAAAAAAACGCGGAGGGCGGAAAG
GAGGCAGAAGAGGAGGAGGGCAACAAAGAGGTGCAGGCCGACCGGAGGGG
CCCGCGGGCCCTACCCACAACGAGTACCACGGCGGTGCCCCCGCGTGGGC
GGCGGTGGAAAAGGGCGGCCCGGAAAGGCTGCGAGCGTTGAGCGCAGCTG
CGTACCCGGTGCTTCTTCTGTGCTACCCGCCCCCTTCGGTCGGCGGCGGA
AGCGGCGGAGCCACGGCGGGGCCCAACGGCTGTATGGGCGCGGACGTCCT
GGACCACTTTTCTGGGAGAGTCTTGCTGTACGTCGGAGAGGTCGGGGGCG
ACACAGGCAGCCCGCGGCTCGAGGCTGCCCTTCGGGCCGGGTGGGACCTG
GTCGAGGAGGTGGACCTCCCGTGCTTCCCTTCCACCGCGAACCGGCTGAT
GGTTTTCAACAGGAAGGAGGCCGCCGCTACCTTGTCCTCGTCTGGACGCC
CGCCCCTGCCTCTTCCTCCGGGGGGCGCGCCGACCGCCGCCCCCGGCGCC
GCAAAACAAAAGCACGGGACGGATGCCGCAACACCAAGGTCAGGCACGCC
AGCGGGCACAACGAGACCTCCCGGTGCGGGCGTGCCGGCCCTCCAAGAAT
CATCGGGCTTCGGCAGTGGTGGCGGCGACGGCGGACGCAGGGGAGGGGCG
ATGGCGATGTACCGATGCTCGGGTTGCGGGGCGGCGGCGGCGCCTTCAGC
GGCGACCGGGGACGGGGCGAGGGGGGTGCGGCTGCACCGCTGCCGCTTGA
CGCGGGCCGTCAGCTACTGCTCGGAGAAGTGCCTGGCTATCGATGGCGAG
AGGTGGCGAGCGAATCTCGAGGCTAGGCACATCTGGTTGTCCGTCGGCAG
TGCCGTGAGGGTCGCTCTGCAGGGAGGAGAGTACGGCGCGGTGTTTCGTG
ACAGGAAGCTCTTCAAACGGTTGCCACCACCGGGGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8312:3692..5029-

>mRNA_H-canaliculatus_M_contigs8312.2.1 ID=mRNA_H-canaliculatus_M_contigs8312.2.1|Name=mRNA_H-canaliculatus_M_contigs8312.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1332bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8312:3692..5029- (Hapterophycus canaliculatus Oshoro7m male)
ATGGGAGGCATCGTTGAGGTTGGTGCTGGCCTAGGATATTGGAAGTGGGT
CCTGGAGCATGGCGGAGAGTTCTCCGGCAGCAGAAGCAGCAGCGGCTGCC
GTGGTGGTGGTCGCGGTATTGGTGGGGCAGGCAGCGGCGGCGGTAGCCGG
GATAGGTGTCTGGATAGCGCTGGAATCGACAACAGAATGCCCAGCGTGGT
CGATGGTGGTGGTGGTGGTGGTGGTCCTAGTGGTCTTGGCTCGAAGGGAA
CCGCCCCGCTGAGCTTCCTGGCCATCGACAAAGATCCCTCGCGCCTTCCA
GCCTCCGGTGGCTCGAGAAACCCCGGCCCCGTCATCGAGTCCGGGCGAAA
TCAGGGAGGACCGGCGAGAGAAAAAAAACGCGGAGGGCGGAAAGGAGGCA
GAAGAGGAGGAGGGCAACAAAGAGGTGCAGGCCGACCGGAGGGGCCCGCG
GGCCCTACCCACAACGAGTACCACGGCGGTGCCCCCGCGTGGGCGGCGGT
GGAAAAGGGCGGCCCGGAAAGGCTGCGAGCGTTGAGCGCAGCTGCGTACC
CGGTGCTTCTTCTGTGCTACCCGCCCCCTTCGGTCGGCGGCGGAAGCGGC
GGAGCCACGGCGGGGCCCAACGGCTGTATGGGCGCGGACGTCCTGGACCA
CTTTTCTGGGAGAGTCTTGCTGTACGTCGGAGAGGTCGGGGGCGACACAG
GCAGCCCGCGGCTCGAGGCTGCCCTTCGGGCCGGGTGGGACCTGGTCGAG
GAGGTGGACCTCCCGTGCTTCCCTTCCACCGCGAACCGGCTGATGGTTTT
CAACAGGAAGGAGGCCGCCGCTACCTTGTCCTCGTCTGGACGCCCGCCCC
TGCCTCTTCCTCCGGGGGGCGCGCCGACCGCCGCCCCCGGCGCCGCAAAA
CAAAAGCACGGGACGGATGCCGCAACACCAAGGTCAGGCACGCCAGCGGG
CACAACGAGACCTCCCGGTGCGGGCGTGCCGGCCCTCCAAGAATCATCGG
GCTTCGGCAGTGGTGGCGGCGACGGCGGACGCAGGGGAGGGGCGATGGCG
ATGTACCGATGCTCGGGTTGCGGGGCGGCGGCGGCGCCTTCAGCGGCGAC
CGGGGACGGGGCGAGGGGGGTGCGGCTGCACCGCTGCCGCTTGACGCGGG
CCGTCAGCTACTGCTCGGAGAAGTGCCTGGCTATCGATGGCGAGAGGTGG
CGAGCGAATCTCGAGGCTAGGCACATCTGGTTGTCCGTCGGCAGTGCCGT
GAGGGTCGCTCTGCAGGGAGGAGAGTACGGCGCGGTGTTTCGTGACAGGA
AGCTCTTCAAACGGTTGCCACCACCGGGGTAG
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