mRNA_H-canaliculatus_M_contigs8309.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8309.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8309.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8309.1.1 vs.
Match: Peptidyl-prolyl (cis-trans isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHE4_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 6.090e-56
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 1
Query:    1 MGRITLELRADVVPKTAENFRQLCTGEGPVKGFKGSKFHRIIPQFMCQGGDFTRGDGTGGESIYGRTFPDENFELSHTGPGILSMVS 261
            MGRITLELRADVVPKTAENFRQLCTGEGPVKGFKGSKFHRIIPQFMCQGGDFT GDGTGGESIYGRTFPDENFELSHTGPGILSM +
Sbjct:   32 MGRITLELRADVVPKTAENFRQLCTGEGPVKGFKGSKFHRIIPQFMCQGGDFTAGDGTGGESIYGRTFPDENFELSHTGPGILSMAN 118          
BLAST of mRNA_H-canaliculatus_M_contigs8309.1.1 vs.
Match: Peptidyl-prolyl (cis-trans isomerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR31_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 2.760e-55
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 1
Query:    1 MGRITLELRADVVPKTAENFRQLCTGEGPVKGFKGSKFHRIIPQFMCQGGDFTRGDGTGGESIYGRTFPDENFELSHTGPGILSMVS 261
            MGRITLELRADVVPKTAENFRQLCTGEGPVKGFKGSKFHRIIPQFMCQGGDFT GDGTGGESIYGRTFPDENFELSHTGPGILSM +
Sbjct:   81 MGRITLELRADVVPKTAENFRQLCTGEGPVKGFKGSKFHRIIPQFMCQGGDFTAGDGTGGESIYGRTFPDENFELSHTGPGILSMAN 167          
BLAST of mRNA_H-canaliculatus_M_contigs8309.1.1 vs.
Match: peptidyl-prolyl (cis-trans isomerase-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CB95F6)

HSP 1 Score: 145 bits (367), Expect = 6.530e-43
Identity = 68/87 (78.16%), Postives = 74/87 (85.06%), Query Frame = 1
Query:    1 MGRITLELRADVVPKTAENFRQLCTGEGPVKGFKGSKFHRIIPQFMCQGGDFTRGDGTGGESIYGRTFPDENFELSHTGPGILSMVS 261
            +GRIT+ELRADVVPKTAENFR LCTGE     +KGS FHR+IPQFMCQGGDFTRGDGTGG SIYG  F DENF+L HTGPGILSM +
Sbjct:   17 IGRITMELRADVVPKTAENFRALCTGEKGKNTYKGSTFHRVIPQFMCQGGDFTRGDGTGGVSIYGAKFEDENFKLQHTGPGILSMAN 103          
BLAST of mRNA_H-canaliculatus_M_contigs8309.1.1 vs.
Match: Peptidyl-prolyl (cis-trans isomerase n=2 Tax=Deuterostomia TaxID=33511 RepID=A0A6P4Z4W5_BRABE)

HSP 1 Score: 145 bits (366), Expect = 9.270e-43
Identity = 68/87 (78.16%), Postives = 76/87 (87.36%), Query Frame = 1
Query:    1 MGRITLELRADVVPKTAENFRQLCTGEGPVKGFKGSKFHRIIPQFMCQGGDFTRGDGTGGESIYGRTFPDENFELSHTGPGILSMVS 261
            +GRIT+ELRADVVPKTAENFR LCTGE    G+KGS FHR+IPQFMCQGGDFTRG+GTGG+SIYG  F DENF+L HTGPGILSM +
Sbjct:   17 LGRITMELRADVVPKTAENFRALCTGEKGF-GYKGSSFHRVIPQFMCQGGDFTRGNGTGGKSIYGEKFADENFQLKHTGPGILSMAN 102          
BLAST of mRNA_H-canaliculatus_M_contigs8309.1.1 vs.
Match: Peptidyl-prolyl (cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0W9_9STRA)

HSP 1 Score: 144 bits (362), Expect = 3.040e-42
Identity = 64/87 (73.56%), Postives = 76/87 (87.36%), Query Frame = 1
Query:    1 MGRITLELRADVVPKTAENFRQLCTGEGPVKGFKGSKFHRIIPQFMCQGGDFTRGDGTGGESIYGRTFPDENFELSHTGPGILSMVS 261
            +GR+ + LR D+VPKTAENFRQLCTGE  + G++GS FHR+IP+FMCQGGDFT G+GTGGESIYGRTFPDENF L H+GPGILSM +
Sbjct:    8 LGRVVMVLRKDIVPKTAENFRQLCTGESGI-GYRGSTFHRVIPKFMCQGGDFTEGNGTGGESIYGRTFPDENFTLKHSGPGILSMAN 93          
BLAST of mRNA_H-canaliculatus_M_contigs8309.1.1 vs.
Match: PPIF (protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0EPF0_BRALA)

HSP 1 Score: 143 bits (361), Expect = 5.490e-42
Identity = 64/87 (73.56%), Postives = 76/87 (87.36%), Query Frame = 1
Query:    1 MGRITLELRADVVPKTAENFRQLCTGEGPVKGFKGSKFHRIIPQFMCQGGDFTRGDGTGGESIYGRTFPDENFELSHTGPGILSMVS 261
            +GR+ +ELR DVVPKTAENFR LCTGE  + G+KGS FHR+IPQFMCQGGDFT+G+GTGG+SIYG  FPDENF+L HTGPG+LSM +
Sbjct:   17 LGRVVMELRPDVVPKTAENFRALCTGEKDM-GYKGSAFHRVIPQFMCQGGDFTKGNGTGGKSIYGEKFPDENFQLKHTGPGVLSMAN 102          
BLAST of mRNA_H-canaliculatus_M_contigs8309.1.1 vs.
Match: Peptidyl-prolyl (cis-trans isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJN2_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 1.020e-41
Identity = 67/86 (77.91%), Postives = 74/86 (86.05%), Query Frame = 1
Query:    4 GRITLELRADVVPKTAENFRQLCTGEGPVKGFKGSKFHRIIPQFMCQGGDFTRGDGTGGESIYGRTFPDENFELSHTGPGILSMVS 261
            GR+ +ELRADVVPKTAENFRQLCTGE    G+KGS FHRIIPQFMCQGGDFT G+GTGG+SIYG  F DENFEL HTGPG+LSM +
Sbjct:   39 GRVVMELRADVVPKTAENFRQLCTGEKGF-GYKGSSFHRIIPQFMCQGGDFTNGNGTGGKSIYGSKFDDENFELKHTGPGVLSMAN 123          
BLAST of mRNA_H-canaliculatus_M_contigs8309.1.1 vs.
Match: Peptidyl-prolyl (cis-trans isomerase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JVQ6_FISSO)

HSP 1 Score: 142 bits (357), Expect = 1.600e-41
Identity = 66/87 (75.86%), Postives = 76/87 (87.36%), Query Frame = 1
Query:    1 MGRITLELRADVVPKTAENFRQLCTGEGPVKGFKGSKFHRIIPQFMCQGGDFTRGDGTGGESIYGRTFPDENFELSHTGPGILSMVS 261
            +GRI +ELRAD+VPKTAENFRQLCTGE P  G+KGS FHR+IP FMCQGGDFT  +GTGG+SIYG  FPDENF+L+HTGPGILSM +
Sbjct:    8 VGRIVMELRADIVPKTAENFRQLCTGE-PGFGYKGSSFHRVIPGFMCQGGDFTNHNGTGGKSIYGGKFPDENFKLTHTGPGILSMAN 93          
BLAST of mRNA_H-canaliculatus_M_contigs8309.1.1 vs.
Match: Peptidyl-prolyl (cis-trans isomerase n=1 Tax=Anaerolineaceae bacterium 4572_78 TaxID=1972460 RepID=A0A1W9W4U3_9CHLR)

HSP 1 Score: 142 bits (357), Expect = 2.160e-41
Identity = 69/86 (80.23%), Postives = 74/86 (86.05%), Query Frame = 1
Query:    4 GRITLELRADVVPKTAENFRQLCTGEGPVKGFKGSKFHRIIPQFMCQGGDFTRGDGTGGESIYGRTFPDENFELSHTGPGILSMVS 261
            GRI +EL ADVVPKTAENFRQLCT   P  GFKGSKFHRIIP FMCQGGDFTRG+GTGG+SIYG+ FPDENFEL HT PGILSM +
Sbjct:   19 GRIVMELFADVVPKTAENFRQLCT-HVPGFGFKGSKFHRIIPDFMCQGGDFTRGNGTGGKSIYGQKFPDENFELQHTEPGILSMAN 103          
BLAST of mRNA_H-canaliculatus_M_contigs8309.1.1 vs.
Match: Peptidyl-prolyl (cis-trans isomerase n=1 Tax=Halomicronema hongdechloris C2206 TaxID=1641165 RepID=A0A1Z3HTG9_9CYAN)

HSP 1 Score: 142 bits (357), Expect = 2.820e-41
Identity = 69/92 (75.00%), Postives = 73/92 (79.35%), Query Frame = 1
Query:    4 GRITLELRADVVPKTAENFRQLCTGE------GPVKGFKGSKFHRIIPQFMCQGGDFTRGDGTGGESIYGRTFPDENFELSHTGPGILSMVS 261
            GRI +ELR DV P+TAENFR LCTGE      G    FKGS FHRIIP FMCQGGDFTRG+GTGGESIYGRTF DENFEL HTGPGILSM +
Sbjct:   21 GRIVIELRTDVTPQTAENFRALCTGEQGTGASGKPLHFKGSSFHRIIPDFMCQGGDFTRGNGTGGESIYGRTFADENFELKHTGPGILSMAN 112          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8309.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Peptidyl-prolyl6.090e-5696.55cis-trans isomerase n=1 Tax=Ectocarpus siliculosus... [more]
Peptidyl-prolyl2.760e-5596.55cis-trans isomerase n=1 Tax=Ectocarpus sp. CCAP 13... [more]
peptidyl-prolyl6.530e-4378.16cis-trans isomerase-like n=1 Tax=Saccoglossus kowa... [more]
Peptidyl-prolyl9.270e-4378.16cis-trans isomerase n=2 Tax=Deuterostomia TaxID=33... [more]
Peptidyl-prolyl3.040e-4273.56cis-trans isomerase n=1 Tax=Tribonema minus TaxID=... [more]
PPIF5.490e-4273.56protein n=1 Tax=Branchiostoma lanceolatum TaxID=77... [more]
Peptidyl-prolyl1.020e-4177.91cis-trans isomerase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
Peptidyl-prolyl1.600e-4175.86cis-trans isomerase n=2 Tax=Fistulifera solaris Ta... [more]
Peptidyl-prolyl2.160e-4180.23cis-trans isomerase n=1 Tax=Anaerolineaceae bacter... [more]
Peptidyl-prolyl2.820e-4175.00cis-trans isomerase n=1 Tax=Halomicronema hongdech... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8309contigH-canaliculatus_M_contigs8309:3238..4941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FHE4
PFAMsPro_isomerase
Model size261
Max annot lvl2759|Eukaryota
KEGG koko:K09565
KEGG Pathwayko04020,ko04022,ko05012,ko05016,ko05145,map04020,map04022,map05012,map05016,map05145
Hectar predicted targeting categoryother localisation
Exons4
Evalue9.98e-57
EggNOG OGsCOG0652@1|root,KOG0865@2759|Eukaryota
EC5.2.1.8
Descriptionpeptidyl-prolyl cis-trans isomerase activity
Cds size261
COG categoryO
BRITEko00000,ko00001,ko01000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854146.4962728-CDS-H-canaliculatus_M_contigs8309:3237..32891696854146.4962728-CDS-H-canaliculatus_M_contigs8309:3237..3289Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8309 3238..3289 +
1696854146.5118916-CDS-H-canaliculatus_M_contigs8309:3740..38201696854146.5118916-CDS-H-canaliculatus_M_contigs8309:3740..3820Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8309 3741..3820 +
1696854146.5274475-CDS-H-canaliculatus_M_contigs8309:4264..43071696854146.5274475-CDS-H-canaliculatus_M_contigs8309:4264..4307Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8309 4265..4307 +
1696854146.5424123-CDS-H-canaliculatus_M_contigs8309:4855..49411696854146.5424123-CDS-H-canaliculatus_M_contigs8309:4855..4941Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8309 4856..4941 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8309.1.1prot_H-canaliculatus_M_contigs8309.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8309 3238..4941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8309.1.1

>prot_H-canaliculatus_M_contigs8309.1.1 ID=prot_H-canaliculatus_M_contigs8309.1.1|Name=mRNA_H-canaliculatus_M_contigs8309.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=87bp
MGRITLELRADVVPKTAENFRQLCTGEGPVKGFKGSKFHRIIPQFMCQGG
DFTRGDGTGGESIYGRTFPDENFELSHTGPGILSMVS
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mRNA from alignment at H-canaliculatus_M_contigs8309:3238..4941+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8309.1.1 ID=mRNA_H-canaliculatus_M_contigs8309.1.1|Name=mRNA_H-canaliculatus_M_contigs8309.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1704bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8309:3238..4941+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGGACGCATCACCCTTGAGCTCCGAGCGGACGTCGTGCCCAAGACGGC GGGTGCGTGGGTTATTGGCGGAACTCGTTCTCATAACTAAAACGCTGGTC AGGGCCTTGTCTTTCGCGGGCGGCGGTGCGTGATGGCCCTTTCTCGTTGC CAGTGTTTTGGGGCCCACCCAAGCAGGGAGCTGGTGCTGCCCCTTTAGGT CGCGGAAGCGCTCTGAAGCACTCGCGTTGTCAGCGCCAAGCCGACGAGCG GGCCGGTCCTACTCCGCATCCGCTGATGAGAGAAAAAGCGTACTGGTAAG ATTTGCCTTGGGATTCACCACCAATGCGGGTAGATGTGCAGCGCAGGAGC AAGGAACAAGGGTTTTGGACCGCCACAGATGCAGCGATTGATCCTCGGAT TTATCGGTCGTGATGGTTCGACTGTGGTAACCTATTGGTTTTTGCCTCCG CGCCTGCGCTTGCCCCGACCGCTCCCGTTTCCTGCGTCATGCTCCTTTCT CAGAGAACTTCCGGCAGCTTTGCACCGGGGAGGGGCCGGTGAAGGGTTTC AAGGGATCCAAGTTCCACCGTATCATCCCGCAGGTGATACCCGGAAGGGA AAGAGAGACAAGCAGGAAACCGTGATCCGTAGATATCAGCGGGAGCAACG GCAGCACGAATGAGCCACCCTGTATGCGTTGGAGTGGTTGTCCGAAAGAA TTTGGGGCGGAGGGGGGGGGTTCGTTGCTTCGCTTTCTTCTCGTTTCGAT ACAGGTCGTCGTTAGCCCTTCCTCGAGGGGCCGGTTTTCAAAAGCAATCT GGCGTGCCTTTCAACCCGTGAGGGAGCGGGGAGAGGTCACAACGTGTTCG GACAGCCCTCGACCAGGCCCCTAGACCTTGCCAAGCTCTTGCTGCAAGGA TTTGCGTCGCCATCGAAAACGTCTCCGAATCCTACTCTTCGTCCTTCTCC AGCCCCTCCTAAGACAGGCTCTCGGTGTCGTCCTTTTCGTTTGCTTTTTG CACGATTATTTCTGCTTTCTCCCCCAGTTCATGTGCCAAGGAGGCGACTT CACGAGGGGAGACGGAACCGGTACGACTTTTGACTGTGTGTGTGTGTGTC GTGCTCAGGTTGCGGCGGCGTTTGTCGTCGTGGCAGTTGTAGCATTAGCC GGTTTCCAACAGAAGGAATTGTTGTCGTTAGTCTAGTGGCAACGCTGTCT GGAGTTCTAGCGGACCGTAAACCGTTCCCGTGCTTCCGCGTTTGTTGTAG AGGTTATTTCTCTTAATGCTTGCTGATGCAGGTCTTGCCGTCGGCAGAGT GATGCGGTGTGCTCGACCACGGCAGTTCCACCACCTATTCTTCTGGTAGT ACCGTTAGTGCTGCTGTTGTCGATGCCGCTTGTGATGAAGGATACTGTCA CAGCCACTCACGACGTCATCGTTTTACCTGCTGCTGCTGGCAGCGTACAG GATCGTCATCCCCTTTTCACATGTCGCCCGGAGAAAAGCTGCATCCTCGA ACCACGTCGCTCCGCAGGGGGGTACCAAGTTACTGCTGTAATTACACGTT GACTCGCTGGGTTTCGTGGCCGATACTAAGATTGTTGCTGGCTTTTTTGC TTCCTCATTCGTGTGCAGGCGGGGAATCCATTTACGGGCGCACCTTCCCT GACGAGAACTTCGAGCTCTCCCACACTGGCCCGGGCATCCTATCGATGGT AAGT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8309:3238..4941+

>mRNA_H-canaliculatus_M_contigs8309.1.1 ID=mRNA_H-canaliculatus_M_contigs8309.1.1|Name=mRNA_H-canaliculatus_M_contigs8309.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=261bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8309:3238..4941+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGGACGCATCACCCTTGAGCTCCGAGCGGACGTCGTGCCCAAGACGGC
GGAGAACTTCCGGCAGCTTTGCACCGGGGAGGGGCCGGTGAAGGGTTTCA
AGGGATCCAAGTTCCACCGTATCATCCCGCAGTTCATGTGCCAAGGAGGC
GACTTCACGAGGGGAGACGGAACCGGCGGGGAATCCATTTACGGGCGCAC
CTTCCCTGACGAGAACTTCGAGCTCTCCCACACTGGCCCGGGCATCCTAT
CGATGGTAAGT
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