mRNA_H-canaliculatus_M_contigs8045.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8045.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV6_ECTSI) HSP 1 Score: 258 bits (660), Expect = 3.780e-75 Identity = 190/446 (42.60%), Postives = 241/446 (54.04%), Query Frame = 1
Query: 31 MLSPQGLAAKKITLEGFAVPVSLRLLDRRPQQQQQK-----------------AVGSTVTEPAALSITWIDLDTFGFDIAGLTSIRRGGVGEERLGHGAETARRKRSWHGASKDGRGQEPLVLVLSWGTEGA-GPAEVAFELATAEERDLVATTLEMLVAGLAGQTAQPADDYGRSGSEIASSCGAELGPQQSAV-----DIATSRRAVGDNPRSSGGGGGDSKASWSAGRFPTPPHTDTDIRLAPAGKGEPGTAAV---SGGLSRLSSSSDTAVTARSRELRDITTLVSPSRPGIRRRGASFGPA---RECFVAPELTRSRTSGGVMERRESEPEVLQPEREVEERRRRQQAMVRLLVMYDRTRDEARASSWRLGAMRLKRLLSAAATRQTEKCWARWCGGVRRANERREKSDRRLWYLHAKANQNNDLLAWYHATFCREVYRRR 1281
MLSP+GLA +K+TLEG++VPV+LRLLDRR A G + P L+ITW+D DTFGFD+ G+TSIRRG E G A RK LVLSWG+ G GP+++ A+ E RDLV TLE LV GL G D +G + S+ + Q+ V + A S A P ++ D D +P ++A+ G L SSD A + R R +L G+ RRG SF A + V L R+RT G + RES+ ++ E+E+E RRRR++AM RLL +YDR RDE A++ RLGA++LKRLLS AATRQ EKCW RWCGGVR+ANE R+++DRRLW+LHAKANQNNDLLAWYHATFCREVYRRR
Sbjct: 1 MLSPEGLAMRKVTLEGYSVPVALRLLDRRXXXXXXXXXXXXXXXXXXXXXXXXASGEGIISPL-LAITWLDSDTFGFDLRGVTSIRRG---HEAHGSEGAAAGRKXXXXXXXXXXXSCRNTSLVLSWGSAGEIGPSKLILAAASRELRDLVMLTLETLVDGLQGGGG---DHVSAAGEGVGSTAAPHVVQQEIQVGGREGEQAGSSDAEPAAPTATXXXXXXXXXXXXXXXXXVLARFDNDCA-------DPASSAIRHRGGDLRERLFSSDAAAASAERSSRRRASL------GLHRRGVSFSSAGADKAASVVHGLERARTVGASVIGRESDAGLVL-EQELEARRRREEAMARLLAVYDRARDETHAAACRLGALKLKRLLSGAATRQMEKCWTRWCGGVRQANEARQRADRRLWHLHAKANQNNDLLAWYHATFCREVYRRR 425
BLAST of mRNA_H-canaliculatus_M_contigs8045.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDY4_9PHAE) HSP 1 Score: 242 bits (617), Expect = 8.950e-68 Identity = 189/456 (41.45%), Postives = 232/456 (50.88%), Query Frame = 1
Query: 19 LAKLMLSPQGLAAKKITLEGFAVPVSLRLLDRRPQQQQQK------------------------AVGSTVTEPAALSITWIDLDTFGFDIAGLTSIRRGGVGEERLGHGAETARRKRSWHGASKDGRGQEPLVLVLSWGTEGA-GPAEVAFELATAEERDLVATTLEMLVAGLAGQTAQPADDYGRSGSEIASSCGAELGPQQSAVDIATSRRAVGDNPRSSGGGGGDSKASWSAGRFPTPPHTDTDIR----LAPAGKGEPGTAAVS---GGLSRLSSSSDTAVTARSRELRDITTLVSPSRPGIRRRGASFGPA---RECFVAPELTRSRTSGGVMERRESEPEVLQPEREVEERRRRQQAMVRLLVMYDRTRDEARASSWRLGAMRLKRLLSAAATRQTEKCWARWCGGVRRANERREKSDRRLWYLHAKANQNNDLLAWYHATFCREVYRRR 1281
LAKLMLS +GLA +KITLEG++VPV+LRLLDRR A G +T P L+ITW+D DTFGFD+ G+TSIRRG E G A RKRS G LVLSWG+ G GP+++ A+ E RDLV TLEMLV GL G D D AP + +P ++A+S GGL SSD A + R R + G+ RRG SFG A + V L R+ T G + R+ + ++ E E E RRRR+QAM RLL +YDR RDE +A++ RLGA++LKRLLS AATRQ E+CW RWCG VR+AN+ R+++DRR WYLHAKANQNNDLLAWYHATFCREVYRRR
Sbjct: 104 LAKLMLSTEGLAMRKITLEGYSVPVALRLLDRRXXXXXXXXXXXXXXXXXXXXXXXXXXXACGGASGEGITSPL-LAITWLDSDTFGFDLRGVTSIRRG---HEYHGSEGAEAGRKRS-RGXXXXXXSYHDTSLVLSWGSAGEIGPSKLILAAASRELRDLVMLTLEMLVDGLQGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILSRFDNDAADCSFFAPL-QTDPPSSAISHRGGGLRERLFSSDAAAASAERSSRLQASF------GLHRRGVSFGSAGADKAASVDRGLERASTVGASVIGRDRDAGLVL-EHEQEARRRREQAMARLLAVYDRARDELQAAACRLGAVKLKRLLSGAATRQIERCWTRWCGAVRQANDGRQRADRRRWYLHAKANQNNDLLAWYHATFCREVYRRR 546
BLAST of mRNA_H-canaliculatus_M_contigs8045.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XPI0_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 3.090e-6 Identity = 36/92 (39.13%), Postives = 47/92 (51.09%), Query Frame = 1
Query: 1009 RLLVMYDRTRDEARASSWRLGAMRLKRLLSAAATRQTEKCWARWCGGVRRANERREKSDRRLWYLHAKANQNNDLLAWYHATFCREVYRRRG 1284
R+L + D+ AS W + L+ ++ + +W G V +ANE DR W LHA AN + DL AWYHATF EVYR RG
Sbjct: 370 RILGAREAALDDFTASIWESSFLFLESIVIWRNIELRRMAFNQWTGFVFQANEPHMVKDRSQWRLHAVANSDLDLQAWYHATFSAEVYRLRG 461
BLAST of mRNA_H-canaliculatus_M_contigs8045.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCW5_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 9.000e-6 Identity = 37/97 (38.14%), Postives = 48/97 (49.48%), Query Frame = 1
Query: 1009 RLLVMYDRTRDEARASSWR-----LGAMRLKRLLSAAATRQTEKCWARWCGGVRRANERREKSDRRLWYLHAKANQNNDLLAWYHATFCREVYRRRG 1284
R+L + D+ A+ W +G++R +RL+ T + RW V N + DR W LHA AN DL AWYHATF EVYR RG
Sbjct: 268 RILCAREAAVDDYTATLWESSIMYIGSLRRRRLVDLRRT-----AFHRWSRLVYYENREKMNQDRAQWRLHAIANSERDLQAWYHATFSPEVYRLRG 359 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8045.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs8045.1.1 >prot_H-canaliculatus_M_contigs8045.1.1 ID=prot_H-canaliculatus_M_contigs8045.1.1|Name=mRNA_H-canaliculatus_M_contigs8045.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=419bp MLSPQGLAAKKITLEGFAVPVSLRLLDRRPQQQQQKAVGSTVTEPAALSIback to top mRNA from alignment at H-canaliculatus_M_contigs8045:297..4146- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs8045.1.1 ID=mRNA_H-canaliculatus_M_contigs8045.1.1|Name=mRNA_H-canaliculatus_M_contigs8045.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3850bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8045:297..4146- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8045:297..4146- >mRNA_H-canaliculatus_M_contigs8045.1.1 ID=mRNA_H-canaliculatus_M_contigs8045.1.1|Name=mRNA_H-canaliculatus_M_contigs8045.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1257bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8045:297..4146- (Hapterophycus canaliculatus Oshoro7m male)back to top |