mRNA_H-canaliculatus_M_contigs804.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs804.1.1
Unique NamemRNA_H-canaliculatus_M_contigs804.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs804.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVP2_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 1.990e-48
Identity = 88/102 (86.27%), Postives = 95/102 (93.14%), Query Frame = 3 
Query:   12 DIDLKLAMQNARANLAAGTSPGAGLESAFDQADAAFADLIVTSIDDQGVTLNDEDVQELAKSGMMDKKSTSKKSKGLFGDVSDMFGALSGGAHIVKRDDGTV 317
            DIDL  AM NARANLAAGTSPGAGLESAFDQADAAFADLIVTS+DDQGVTL+DE+VQELA+SGMMD+ STSKKSKGLF D+ D+ GALSGGAHIVKRDDGTV
Sbjct:   79 DIDLSSAMANARANLAAGTSPGAGLESAFDQADAAFADLIVTSVDDQGVTLDDEEVQELAQSGMMDQDSTSKKSKGLFSDMKDVLGALSGGAHIVKRDDGTV 180
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BLAST of mRNA_H-canaliculatus_M_contigs804.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCH3_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.640e-30
Identity = 60/103 (58.25%), Postives = 81/103 (78.64%), Query Frame = 3 
Query:    9 GDIDLKLAMQNARANLAAGTSPGAGLESAFDQADAAFADLIVTSIDDQGVTLNDEDVQELAKSGMMDKKSTSKKSKGLFGDVSDMFGALSGGAHIVKRDDGTV 317
            GDI+L  A+ NAR NL  G SPGAGL +A +QADAA+ADLI+TS+D + ++L DED+ EL K+GMMD KSTS++S+G  GD++D+F AL GGAHI ++ DG +
Sbjct:    7 GDIELAKALDNARRNLEEGKSPGAGLATAEEQADAAYADLILTSVDQKHLSLGDEDLAELTKAGMMDSKSTSRRSRGWAGDIADVFNALKGGAHIQRQKDGRI 109
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BLAST of mRNA_H-canaliculatus_M_contigs804.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1DZJ8_MICCC)

HSP 1 Score: 99.0 bits (245), Expect = 9.600e-23
Identity = 55/100 (55.00%), Postives = 73/100 (73.00%), Query Frame = 3 
Query:   18 DLKLAMQNARANLAAGTSPGAGLESAFDQADAAFADLIVTSIDDQGVTLNDEDVQELAKSGMMDKKSTSKKSKGLFGDVSDMFGALSGGAHIVKRDDGTV 317
            D+  AM+NARA   +G SPGAGL  A  QA+AAFAD+I T++D  G  L+ E++ +L++ G MD++S SKKS G+ GDV D+FGALS GAHIVK+  G V
Sbjct:   45 DISKAMENARACEKSGLSPGAGLADADAQAEAAFADMINTTVDVTGEALDSEELSQLSRGGKMDEESKSKKSGGILGDVRDLFGALSKGAHIVKQKGGRV 144
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BLAST of mRNA_H-canaliculatus_M_contigs804.1.1 vs.
Match: Predicted (protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MJA6_MICPC)

HSP 1 Score: 88.2 bits (217), Expect = 2.420e-18
Identity = 52/99 (52.53%), Postives = 69/99 (69.70%), Query Frame = 3 
Query:   21 LKLAMQNARANLAAGTSPGAGLESAFDQADAAFADLIVTSIDDQGVTLNDEDVQELAKSGMMDKKSTSKKSKGLFGDVSDMFGALSGGAHIVKRDDGTV 317
            +  +M  ARA  A+G SPGAGL SA DQA+AAFAD+I T++D  G  L+ +    LA+ G MD  STS+KS G++ DV D+FGAL  GAHIV++ +G V
Sbjct:   69 IAASMAAARACEASGMSPGAGLSSAEDQAEAAFADMINTTVDVTGEALDADARARLAEGGRMDGASTSRKSGGMWSDVRDLFGALGKGAHIVRQKNGRV 167
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BLAST of mRNA_H-canaliculatus_M_contigs804.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7R9XNM3_9CHLO)

HSP 1 Score: 83.2 bits (204), Expect = 5.790e-16
Identity = 53/101 (52.48%), Postives = 68/101 (67.33%), Query Frame = 3 
Query:   21 LKLAMQNARANLAAGTSPGAGLESAFDQADAAFADLIVTSID--DQGVTLNDEDVQELAKSGMMDKKSTSKKSKGLFGDVSDMFGALSGGAHIVKRDDGTV 317
            L+ AM NAR N   G SPGAGL +A +QA+AAFADLI TS+D  D+   L   ++ EL++ G MD+ S ++KS GL  DV  +F AL  GAHIVK+ DG V
Sbjct:  119 LEFAMSNARKNSLEGLSPGAGLMTAQEQAEAAFADLINTSLDGADRNA-LTGAEITELSEGGRMDEGSKARKSGGLLADVVGLFEALGKGAHIVKQKDGRV 218
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BLAST of mRNA_H-canaliculatus_M_contigs804.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HV35_9CHLO)

HSP 1 Score: 79.3 bits (194), Expect = 2.650e-14
Identity = 51/97 (52.58%), Postives = 65/97 (67.01%), Query Frame = 3 
Query:   33 MQNARANLAAGTSPGAGLESAFDQADAAFADLIVTSID--DQGVTLNDEDVQELAKSGMMDKKSTSKKSKGLFGDVSDMFGALSGGAHIVKRDDGTV 317
            M NAR N   G SPGAGL +A +QA+AAFADLI TS+D  D+   L   ++ EL++ G MD+ S ++KS GL  DV  +F AL  GAHIVK+ DG V
Sbjct:   71 MSNARKNSLEGLSPGAGLMTAQEQAEAAFADLINTSLDGADRNA-LTGAEITELSEGGRMDEGSKARKSGGLLADVVGLFEALGKGAHIVKQKDGRV 166
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BLAST of mRNA_H-canaliculatus_M_contigs804.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=uncultured organism MedDCM-OCT-S08-C998 TaxID=743643 RepID=D6PJB7_9ZZZZ)

HSP 1 Score: 73.9 bits (180), Expect = 1.390e-13
Identity = 46/103 (44.66%), Postives = 66/103 (64.08%), Query Frame = 3 
Query:   21 LKLAMQNARANLAAGTSPGAGLESAFDQADAAFADLIVTSIDDQ--GVTLNDEDVQELAKSGMM----DKKSTSKKSKGLFGDVSDMFGALSGGAHIVKRDDG 311
            ++ A+  A+ N  +  SPGAG+E AF+ A+AA+ADLI+TSID +  G  L DED+  L+K G M     K+  + K  G  GD+ +   AL+GGAHIVK ++G
Sbjct:    1 MEQALAQAKENRDSNQSPGAGVEDAFEAAEAAYADLILTSIDQRELGEELGDEDLAALSKGGTMWEDGAKEIRNDKKAGFMGDLFNALSALAGGAHIVKDENG 103
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BLAST of mRNA_H-canaliculatus_M_contigs804.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2FA39_9CHLO)

HSP 1 Score: 65.9 bits (159), Expect = 1.280e-9
Identity = 44/87 (50.57%), Postives = 58/87 (66.67%), Query Frame = 3 
Query:   21 LKLAMQNARANLAAGTSPGAGLESAFDQADAAFADLIVTSID--DQGVTLNDEDVQELAKSGMMDKKSTSKKSKGLFGDVSDMFGAL 275
            L+ AM NAR N   G SPGAGL +A +QA+AAFADLI TS+D  D+   L   ++ EL++ G MD+ S ++KS GL  DV  +F AL
Sbjct:  122 LEFAMSNARKNSLEGLSPGAGLMTAEEQAEAAFADLINTSLDGADRNA-LTGAEITELSEGGRMDEGSKARKSGGLLADVVGLFEAL 207
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs804.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
Uncharacterized1.990e-4886.27protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVP2... [more]
Uncharacterized1.640e-3058.25protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized9.600e-2355.00protein n=1 Tax=Micromonas commoda (strain RCC299 ... [more]
Predicted2.420e-1852.53protein n=2 Tax=Micromonas pusilla TaxID=38833 Rep... [more]
Hypothetical5.790e-1652.48protein (Fragment) n=1 Tax=Pycnococcus provasolii ... [more]
Uncharacterized2.650e-1452.58protein n=1 Tax=Pycnococcus provasolii TaxID=41880... [more]
Uncharacterized1.390e-1344.66protein n=1 Tax=uncultured organism MedDCM-OCT-S08... [more]
Hypothetical1.280e-950.57protein (Fragment) n=1 Tax=Pycnococcus provasolii ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs804contigH-canaliculatus_M_contigs804:469..3693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FVP2
Model size664
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue9.56e-48
EggNOG OGs2D476@1|root,2SU5J@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_006010.1
Cds size288
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs804.1.1prot_H-canaliculatus_M_contigs804.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs804 501..3349 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854132.4241242-UTR-H-canaliculatus_M_contigs804:468..5001696854132.4241242-UTR-H-canaliculatus_M_contigs804:468..500Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs804 469..500 +
1696854132.482584-UTR-H-canaliculatus_M_contigs804:3349..36931696854132.482584-UTR-H-canaliculatus_M_contigs804:3349..3693Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs804 3350..3693 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854132.4395022-CDS-H-canaliculatus_M_contigs804:500..5311696854132.4395022-CDS-H-canaliculatus_M_contigs804:500..531Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs804 501..531 +
1696854132.4495223-CDS-H-canaliculatus_M_contigs804:854..9141696854132.4495223-CDS-H-canaliculatus_M_contigs804:854..914Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs804 855..914 +
1696854132.4589596-CDS-H-canaliculatus_M_contigs804:1141..11911696854132.4589596-CDS-H-canaliculatus_M_contigs804:1141..1191Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs804 1142..1191 +
1696854132.4684455-CDS-H-canaliculatus_M_contigs804:3202..33491696854132.4684455-CDS-H-canaliculatus_M_contigs804:3202..3349Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs804 3203..3349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs804.1.1

>prot_H-canaliculatus_M_contigs804.1.1 ID=prot_H-canaliculatus_M_contigs804.1.1|Name=mRNA_H-canaliculatus_M_contigs804.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=96bp
MQNARANLAAGTSPGAGLESAFDQADAAFADLIVTSIDDQGVTLNDEDVQ
ELAKSGMMDKKSTSKKSKGLFGDVSDMFGALSGGAHIVKRDDGTV*
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mRNA from alignment at H-canaliculatus_M_contigs804:469..3693+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs804.1.1 ID=mRNA_H-canaliculatus_M_contigs804.1.1|Name=mRNA_H-canaliculatus_M_contigs804.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3225bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs804:469..3693+ (Hapterophycus canaliculatus Oshoro7m male)
GCGGCGATGGAGATATCGATCTGAAGTTGGCTATGCAGAACGCACGGGCG
AACCTTGCAGCAGGTGTGGCGTAGGTGTTCAAATCGACGCGGTCTAGCTG
CATTTTCGGGCGCTACGTGCGCAGAAGTTGTGACACGCTTCGTTTCAGCT
CGTGTACCCTGCACCGTCTCACCCATCACGTGCGTTTTTTGTTCAACTTC
AACCGTTAATCCATGTGTATGCCCGTCAGAGTTTATGAAGAGGCTAGAGC
AGTTTGCCACTCGTACAGGTATGATACTCCAGTTGTTGTACTCGTAGATC
TTTTCCATATACGGCTACTCGTACGAGTATATTGCCAGCGACTGCGATGT
CTGACCGTCTGATCGCTCCTCTGTGACTTGCCTCAGGAACGTCGCCGGGC
GCGGGGCTTGAATCAGCATTCGACCAAGCTGATGCAGCGTTTGCAGGTAC
TGCTGTATGCTGTCACACGTAGTTCACAGCACTTTCCTTTTTCTTGTGGC
GTCAACGAGTTCACTTCTTCAGATGCTGTGCAGGAGACCATCTAGGCATG
AATGTAGCATCTAGACTGCAGGTTATGACGAAGTGCTCTTGCTCGTTACA
CTCGTGGGTGTCACTCATGATGTTGTCCTGACCTCTTTTTTTCTCTTCTC
GCTGTTCTTTCTTGTCGGCGTAGACCTGATCGTGACCAGTATCGATGACC
AGGGGGTAACTCTGAATGATGAGGTGAGCATTTTCTACCCTGCCTGCTGC
TCGTACAGACTCCTCCTTCCAACAAGTCTGTTCCGCGCCAGCAGCCTGTA
CATTCAGTCCCAAAGTATTCGCGCTGAACAGCGGTATGTATGAACTACCG
CCACGCCACAGAAACAGCAATGGTACAGCAGTCAAGGAAGGCCAACAGCC
TACACGTCAGATAGGTGTACCTTTTGTGGTGACAAGTAAAAAATAGGGCA
AACGCCAGAAAACGGTATACCGTGTCGAATTACGCCATTAATCGGTGCAG
GCGGAATCGGTCATCCGGAGGTAATTAAACGCTCGTCGCTGGTTGGTCAA
ACCCCTCCTGAACCGTGTTCTGGCGGAATGTCGGGCGGTACATGGGTACC
CGGCTTCTCGGGTTGGGCTTCACCGTTTTCTGACGCCGGGTACACCGTTT
TCTGACGCGGAAAAAGACCGAGCGCGTACGAACGATCCTCCTGATGCGAC
TGTCGATCCCCACAACTCCTCGACTCTTGACCGACGCAAGGCAACCATTT
ACACCAGAGTCAGGCCTGTTCGGGGACCGGCTGAACAACGGCTGCGGGAA
ACTTGTCAAGCGGCAAACGGCTGCATGAGCAACAGACACTCCGTCGCACA
GCACCTTGCCGTAAACCGCAAACAGCCGGCGGCCCCTTGTGCACTGGGCA
CTTGGCACGCTTTCGCCGCGCAAGAAAGTCTCACATATCTCCCAATGAAG
TGACATTCCCGCCAGCTGATTCGCGGCCCACACTACGAGCGCACCCCCGC
GAAGCACGCAGTCCGAAGTTCCATACGAGCATCCCTTCCCAAACGATCAA
ACGAACACAACAAGATGGCATCCCAAAACTCCTTGCTTCGAGCTTAGGAT
TTCGCTGAGATCTGCGTTGCTCTCCTGATAGACTGCTGACCCGTCGCCTT
GCAGCGTTTTAGGACCCCACCGTGAGAGTCTCCGTTGAGAGACGTGTGCG
ATTCGCGCGATGAAGGCAGGCATATTTCAAGCTCAAAAGTACCCTACCGT
ACACAATGCAACATCACACAATGCAAACCTCGGAAACCAATTGATTGTTG
TTCGGCCGGCCGCCGAACAGGCCTGACTCGGGTGTAAATGGTTGCCTTGC
GTCGGCTAAGAGTCGAGGAGTTGTGGGGATCGACAGTCGCACAAGGAGGA
TCGTTCGTGCGCAGTCGGTCTTTTTCCGCGTCAGAAAACGGTGAAGCCCA
ACCCGAGAAGCCGGGTACCGATGAACCGCCCGAAATTCCGTTAGGACAGG
GTACAGGAGGAGTTTGACCAACCAGCGACGAGCGTTTAACTACCTCCCGA
TGACCGATTCCGCCTGTACCGATTTGTGGCGTAATTCGACACGGTATACC
ATTTTCTGGCGTTTGCCCTAAAAAATAAGTAACGGGAGTATCTGGAAAGG
ATAACATTCCAGAGGCGATGCGGGATACGCGGCTCCTCAGATTTTTTATC
GAAAATGTAGCCGTCCCTCACACGGTTTGGCTCCTACAAGCGCCCATTTG
ACGGAAGAATCCCTCACGAGCGTGCTCTGTTAGTAGAGTGTGCAGGTCGC
CCGTTTGTAATTCGGAGGTAGGCCACACGGTCTTGAGTTTAATTTCTTTA
GTCTGAACCCCACACGCGTAGGTAGAGAGAACAAGGGCGCACAACGAGGA
CCGCTGAACAGGGGTCCCGTGACGTCGTACCATCCCTCAGCTTTCCATGA
ACCATCCGCGATGATCCCCACGATCCAGGAACCTCGGGATATTCTCTGCA
CCGTTCCTTGTAACCGTTTCCGTCCTGTCTGCAGCCTACCCACGAAAAGG
TGCAGCCGCCATGCTTCTTCGCCGAGGGCGAGTGCCGTGGTAAAAAGTGC
GCCAAACTCGTACGATCGTCGCACCAACAATAGAACAGCCGGTGTTCTTC
ATTGCTTTCTTGGTAAGCTTTGACAACTCCCTCTCTCTCTCTGCTGTTTT
CTGGTTGCCCTTGCCTCGCCCAATCATCCATCAGGATGTCCAGGAGCTCG
CCAAGTCAGGAATGATGGACAAAAAGAGCACGTCCAAGAAGAGCAAGGGG
CTATTCGGCGACGTCTCGGACATGTTTGGGGCACTGAGCGGGGGGGCGCA
CATCGTCAAGCGCGATGACGGCACCGTTTAATGGGTCCTCCTGCCCTCTC
CGGAAGACACGCTGCCAATCATGTTTCACCTGGTTTTCGGTTCATCTCTG
TCCGCCTTCCATGTTGAAATCAAGTCATGCATCTTGCGTAGTCTTCGGAA
GGAACTTTGAGCTTTTTTCTGAGGGAACGGCAAATACGGAACAAGTATTG
GAAACGCCTAATTCACGCTCTACTCTATACCAACAATCTCATTTGTCAGC
CTTGATAGGAGTTACGGGTTGTTTCGTAGATAAATAGCAGGGTGCTGGAT
GCTCTACCCCAATTTAGGAACTGATGTGCGACAAGCTAGACGTACAGGCA
AGAAAAAGAAACAGAGTGAACCAAC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs804:469..3693+

>mRNA_H-canaliculatus_M_contigs804.1.1 ID=mRNA_H-canaliculatus_M_contigs804.1.1|Name=mRNA_H-canaliculatus_M_contigs804.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=288bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs804:469..3693+ (Hapterophycus canaliculatus Oshoro7m male)
ATGCAGAACGCACGGGCGAACCTTGCAGCAGGAACGTCGCCGGGCGCGGG
GCTTGAATCAGCATTCGACCAAGCTGATGCAGCGTTTGCAGACCTGATCG
TGACCAGTATCGATGACCAGGGGGTAACTCTGAATGATGAGGATGTCCAG
GAGCTCGCCAAGTCAGGAATGATGGACAAAAAGAGCACGTCCAAGAAGAG
CAAGGGGCTATTCGGCGACGTCTCGGACATGTTTGGGGCACTGAGCGGGG
GGGCGCACATCGTCAAGCGCGATGACGGCACCGTTTAA
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