mRNA_H-canaliculatus_M_contigs8036.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8036.2.1
Unique NamemRNA_H-canaliculatus_M_contigs8036.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs8036.2.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRD5_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 5.660e-17
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 LMRPNETQFSHPNGQRLQFSKPNIFEVDLHDDSVRTR 111
            LMRPNETQFSHPNGQRLQFSKPNIFEVDLHDDS+R R
Sbjct:   63 LMRPNETQFSHPNGQRLQFSKPNIFEVDLHDDSIRNR 99
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BLAST of mRNA_H-canaliculatus_M_contigs8036.2.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SJ33_9CHLO)

HSP 1 Score: 54.7 bits (130), Expect = 3.190e-8
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 LMRPNETQFSHPNGQRLQFSKPNIFEVDLHDDSVRTR 111
            LMRPN T F++P G+R  FSKPN+FE DLH+  +R R
Sbjct:   70 LMRPNRTHFANPQGERHLFSKPNVFESDLHEAGIRER 106
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BLAST of mRNA_H-canaliculatus_M_contigs8036.2.1 vs.
Match: Uncharacterized (protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CM95_SAPPC)

HSP 1 Score: 50.8 bits (120), Expect = 3.180e-6
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 LMRPNETQFSHPNGQRLQFSKPNIFEVDLHDDSVRTR 111
            L+ PN+TQF   +G   QF+KPNI+E DLH+ SVRT+
Sbjct:  109 LLEPNKTQFPRADGSVAQFAKPNIYEADLHNASVRTQ 145
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BLAST of mRNA_H-canaliculatus_M_contigs8036.2.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CEY5_PYTIN)

HSP 1 Score: 47.8 bits (112), Expect = 3.900e-5
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:    1 LMRPNETQFS---HPNGQRLQFSKPNIFEVDLHDDSVRTR 111
            L  PN+TQF+   H   + +QF KPNIFEVDLHD S+R R
Sbjct:   79 LFAPNKTQFALTQHGKTRAVQFVKPNIFEVDLHDASLRRR 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8036.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Fe2OG5.660e-1794.59dioxygenase domain-containing protein n=2 Tax=Ecto... [more]
Hypothetical3.190e-859.46protein (Fragment) n=1 Tax=Mantoniella antarctica ... [more]
Uncharacterized3.180e-656.76protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A06... [more]
Fe2OG3.900e-557.50dioxygenase domain-containing protein n=2 Tax=Pyth... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8036contigH-canaliculatus_M_contigs8036:4794..4907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRD5
PFAMs2OG-FeII_Oxy_3,zf-MYND
Model size114
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.36e-16
EggNOG OGsKOG3710@1|root,KOG3710@2759|Eukaryota
Descriptionpeptidyl-proline hydroxylation to 4-hydroxy-L-proline
Cds size111
COG categoryQ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854132.3011568-UTR-H-canaliculatus_M_contigs8036:4793..47961696854132.3011568-UTR-H-canaliculatus_M_contigs8036:4793..4796Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8036 4794..4796 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854132.3129547-CDS-H-canaliculatus_M_contigs8036:4796..49071696854132.3129547-CDS-H-canaliculatus_M_contigs8036:4796..4907Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8036 4797..4907 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8036.2.1prot_H-canaliculatus_M_contigs8036.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8036 4797..4907 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8036.2.1

>prot_H-canaliculatus_M_contigs8036.2.1 ID=prot_H-canaliculatus_M_contigs8036.2.1|Name=mRNA_H-canaliculatus_M_contigs8036.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=37bp
MRPNETQFSHPNGQRLQFSKPNIFEVDLHDDSVRTR*
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mRNA from alignment at H-canaliculatus_M_contigs8036:4794..4907+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8036.2.1 ID=mRNA_H-canaliculatus_M_contigs8036.2.1|Name=mRNA_H-canaliculatus_M_contigs8036.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=114bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8036:4794..4907+ (Hapterophycus canaliculatus Oshoro7m male)
CTGATGCGACCGAACGAAACCCAGTTCTCCCACCCGAACGGGCAACGGCT
ACAGTTTTCCAAGCCCAACATCTTCGAAGTCGACCTGCACGATGACTCCG
TCCGCACGAGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8036:4794..4907+

>mRNA_H-canaliculatus_M_contigs8036.2.1 ID=mRNA_H-canaliculatus_M_contigs8036.2.1|Name=mRNA_H-canaliculatus_M_contigs8036.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=111bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8036:4794..4907+ (Hapterophycus canaliculatus Oshoro7m male)
ATGCGACCGAACGAAACCCAGTTCTCCCACCCGAACGGGCAACGGCTACA
GTTTTCCAAGCCCAACATCTTCGAAGTCGACCTGCACGATGACTCCGTCC
GCACGAGGTGA
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