mRNA_H-canaliculatus_M_contigs8032.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8032.2.1
Unique NamemRNA_H-canaliculatus_M_contigs8032.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs8032.2.1 vs.
Match: WW (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7M1_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 2.520e-21
Identity = 49/79 (62.03%), Postives = 57/79 (72.15%), Query Frame = 1 
Query:    4 GISEVARELFGDSPQADSKGFGGHREEQRLTEARARGGYVTTRGVGSLAGEDEDDLEDISDGGFHSGCWRRKYVRGDMR 240
            G+S++ RELF  SP   +    G +  +RL EAR  GGY  T   GSLAG+ EDDLEDISDGGFHSGCWRRKYVRG+MR
Sbjct: 1357 GVSDLPRELFAASPTGGTGRTSGDKLARRLGEARDNGGYTATPRFGSLAGDVEDDLEDISDGGFHSGCWRRKYVRGEMR 1435
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8032.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
WW2.520e-2162.03domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8032contigH-canaliculatus_M_contigs8032:3600..4108 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G7M1
Preferred nameCEP164
PFAMsWW
Model size510
Max annot lvl2759|Eukaryota
KEGG koko:K16462
Hectar predicted targeting categoryother localisation
GOsGO:0000086,GO:0000278,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006996,GO:0007049,GO:0007346,GO:0008150,GO:0009987,GO:0010389,GO:0010564,GO:0015630,GO:0016043,GO:0022402,GO:0022406,GO:0022607,GO:0030030,GO:0030031,GO:0031974,GO:0031981,GO:0032991,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0050789,GO:0050794,GO:0051179,GO:0051640,GO:0051641,GO:0051726,GO:0060271,GO:0065007,GO:0070013,GO:0070925,GO:0071840,GO:0097539,GO:0097711,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1901987,GO:1901990,GO:1902749,GO:1903047
Exons1
Evalue1.11e-23
EggNOG OGs28IT0@1|root,2QR4A@2759|Eukaryota
Descriptioncilium assembly
Cds size243
COG categoryA
BRITEko00000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854132.0294485-UTR-H-canaliculatus_M_contigs8032:3599..38651696854132.0294485-UTR-H-canaliculatus_M_contigs8032:3599..3865Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8032 3600..3865 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854132.0437698-CDS-H-canaliculatus_M_contigs8032:3865..41081696854132.0437698-CDS-H-canaliculatus_M_contigs8032:3865..4108Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8032 3866..4108 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8032.2.1prot_H-canaliculatus_M_contigs8032.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8032 3866..4108 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8032.2.1

>prot_H-canaliculatus_M_contigs8032.2.1 ID=prot_H-canaliculatus_M_contigs8032.2.1|Name=mRNA_H-canaliculatus_M_contigs8032.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=81bp
SGISEVARELFGDSPQADSKGFGGHREEQRLTEARARGGYVTTRGVGSLA
GEDEDDLEDISDGGFHSGCWRRKYVRGDMR*
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mRNA from alignment at H-canaliculatus_M_contigs8032:3600..4108-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8032.2.1 ID=mRNA_H-canaliculatus_M_contigs8032.2.1|Name=mRNA_H-canaliculatus_M_contigs8032.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=509bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8032:3600..4108- (Hapterophycus canaliculatus Oshoro7m male)
AGTGGCATAAGTGAAGTGGCCCGTGAACTCTTTGGGGATAGCCCTCAAGC
AGATAGCAAGGGTTTCGGCGGACACCGGGAGGAACAGCGGCTGACCGAAG
CGCGCGCGAGAGGGGGCTACGTGACCACCCGAGGGGTCGGATCGTTGGCG
GGCGAAGACGAGGACGACCTGGAAGACATTTCGGACGGCGGGTTTCACTC
TGGGTGTTGGAGGCGGAAATACGTTCGCGGGGATATGCGATAAAACGCGT
CGATTTCGACCAACCGACTAGCAAAAGTCATGCTTTATGGATCGGTAACA
ACGCTGCGCCCTCGGTGGCTTATGAAGTGAAAAATGAGGAATTTTGATGC
TTTGGCTCGACGTGCGCTAGAGGATGGCAACGAATTACACCCTTGATGTG
GTAGCCAGGCGCTTGCGGCGTCCTGGAACGGGCTTACGGTGCAAGATGGG
GAGCCACCAAGCGTCGATGGCGGCCAATTTTAAATGAATATCAATACACC
CAAATATCA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8032:3600..4108-

>mRNA_H-canaliculatus_M_contigs8032.2.1 ID=mRNA_H-canaliculatus_M_contigs8032.2.1|Name=mRNA_H-canaliculatus_M_contigs8032.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=243bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8032:3600..4108- (Hapterophycus canaliculatus Oshoro7m male)
AGTGGCATAAGTGAAGTGGCCCGTGAACTCTTTGGGGATAGCCCTCAAGC
AGATAGCAAGGGTTTCGGCGGACACCGGGAGGAACAGCGGCTGACCGAAG
CGCGCGCGAGAGGGGGCTACGTGACCACCCGAGGGGTCGGATCGTTGGCG
GGCGAAGACGAGGACGACCTGGAAGACATTTCGGACGGCGGGTTTCACTC
TGGGTGTTGGAGGCGGAAATACGTTCGCGGGGATATGCGATAA
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